PDB Chemical Component 041
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 041
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.433 |
1.394 |
C1 |
C6 |
1.435 |
1.387 |
C1 |
H1 |
1.103 |
1.080 |
C2 |
C3 |
1.417 |
1.398 |
C2 |
C24 |
1.498 |
1.477 |
C3 |
C4 |
1.450 |
1.402 |
C3 |
O9 |
1.351 |
1.352 |
C4 |
C5 |
1.425 |
1.398 |
C4 |
N11 |
1.387 |
1.358 |
C5 |
C6 |
1.434 |
1.383 |
C5 |
H5 |
1.103 |
1.080 |
C6 |
O21 |
1.379 |
1.360 |
O9 |
C10 |
1.357 |
1.345 |
C10 |
N11 |
1.370 |
1.308 |
C10 |
C12 |
1.490 |
1.477 |
C12 |
C13 |
1.441 |
1.396 |
C12 |
C17 |
1.431 |
1.396 |
C13 |
C14 |
1.426 |
1.378 |
C13 |
H13 |
1.103 |
1.080 |
C14 |
C15 |
1.435 |
1.389 |
C14 |
H14 |
1.103 |
1.080 |
C15 |
C16 |
1.432 |
1.390 |
C15 |
O23 |
1.375 |
1.359 |
C16 |
C17 |
1.413 |
1.380 |
C16 |
F22 |
1.342 |
1.351 |
C17 |
H17 |
1.103 |
1.080 |
O21 |
H21 |
0.950 |
0.967 |
O23 |
H23 |
0.950 |
0.966 |
C24 |
C25 |
1.358 |
1.326 |
C24 |
H24 |
1.103 |
1.079 |
C25 |
H251 |
1.103 |
1.080 |
C25 |
H252 |
1.103 |
1.080 |
Bond Angles for 041
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
120.1 |
120.3 |
C2 |
C1 |
H1 |
119.9 |
119.8 |
C1 |
C2 |
C3 |
118.8 |
119.6 |
C1 |
C2 |
C24 |
120.7 |
120.2 |
C6 |
C1 |
H1 |
120.0 |
119.9 |
C1 |
C6 |
C5 |
120.5 |
120.5 |
C1 |
C6 |
O21 |
119.0 |
119.8 |
C3 |
C2 |
C24 |
120.5 |
120.2 |
C2 |
C3 |
C4 |
122.1 |
119.8 |
C2 |
C3 |
O9 |
130.9 |
133.8 |
C2 |
C24 |
C25 |
125.9 |
120.0 |
C2 |
C24 |
H24 |
122.5 |
120.0 |
C4 |
C3 |
O9 |
107.0 |
106.4 |
C3 |
C4 |
C5 |
118.4 |
119.7 |
C3 |
C4 |
N11 |
106.6 |
106.7 |
C3 |
O9 |
C10 |
108.9 |
108.1 |
C5 |
C4 |
N11 |
135.0 |
133.6 |
C4 |
C5 |
C6 |
120.1 |
120.0 |
C4 |
C5 |
H5 |
119.6 |
120.0 |
C4 |
N11 |
C10 |
106.9 |
108.7 |
C6 |
C5 |
H5 |
120.2 |
120.0 |
C5 |
C6 |
O21 |
120.5 |
119.8 |
C6 |
O21 |
H21 |
119.0 |
106.8 |
O9 |
C10 |
N11 |
110.6 |
110.0 |
O9 |
C10 |
C12 |
122.0 |
125.0 |
N11 |
C10 |
C12 |
127.4 |
125.0 |
C10 |
C12 |
C13 |
120.9 |
120.1 |
C10 |
C12 |
C17 |
119.0 |
120.1 |
C13 |
C12 |
C17 |
120.1 |
119.8 |
C12 |
C13 |
C14 |
120.8 |
120.0 |
C12 |
C13 |
H13 |
120.1 |
120.0 |
C12 |
C17 |
C16 |
118.9 |
119.9 |
C12 |
C17 |
H17 |
121.2 |
120.0 |
C14 |
C13 |
H13 |
119.1 |
120.0 |
C13 |
C14 |
C15 |
118.6 |
120.1 |
C13 |
C14 |
H14 |
120.4 |
120.0 |
C15 |
C14 |
H14 |
121.0 |
119.9 |
C14 |
C15 |
C16 |
120.1 |
120.2 |
C14 |
C15 |
O23 |
118.7 |
119.9 |
C16 |
C15 |
O23 |
121.2 |
119.9 |
C15 |
C16 |
C17 |
121.5 |
120.0 |
C15 |
C16 |
F22 |
117.6 |
120.0 |
C15 |
O23 |
H23 |
118.7 |
106.8 |
C17 |
C16 |
F22 |
120.9 |
120.0 |
C16 |
C17 |
H17 |
119.9 |
120.0 |
C25 |
C24 |
H24 |
111.6 |
120.0 |
C24 |
C25 |
H251 |
125.9 |
120.0 |
C24 |
C25 |
H252 |
111.6 |
120.0 |
H251 |
C25 |
H252 |
122.5 |
120.0 |
Torsion Angles for 041
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
C2 |
C1 |
C6 |
C5 |
359.9 |
0.2 |
C2 |
C1 |
C6 |
O21 |
180.4 |
180.0 |
C3 |
C2 |
C1 |
C24 |
180.1 |
179.9 |
C1 |
C2 |
C3 |
C4 |
359.9 |
360.0 |
C1 |
C2 |
C3 |
O9 |
179.8 |
180.0 |
C1 |
C2 |
C24 |
C25 |
215.5 |
360.0 |
C1 |
C2 |
C24 |
H24 |
35.5 |
180.0 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
C6 |
C1 |
C2 |
C3 |
0.1 |
0.0 |
C6 |
C1 |
C2 |
C24 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
C1 |
0.0 |
359.5 |
C1 |
C6 |
C5 |
H5 |
180.1 |
179.6 |
C5 |
C6 |
C1 |
O21 |
179.6 |
180.2 |
C1 |
C6 |
O21 |
H21 |
180.0 |
89.9 |
C2 |
C1 |
H1 |
C6 |
180.0 |
180.0 |
H1 |
C1 |
C2 |
C3 |
180.1 |
180.0 |
H1 |
C1 |
C2 |
C24 |
0.0 |
0.0 |
H1 |
C1 |
C6 |
C5 |
179.9 |
180.3 |
H1 |
C1 |
C6 |
O21 |
0.3 |
0.0 |
C3 |
C2 |
C1 |
C6 |
0.1 |
0.0 |
C3 |
C2 |
C1 |
H1 |
180.1 |
180.0 |
C1 |
C2 |
C3 |
C24 |
179.9 |
180.1 |
C3 |
C2 |
C24 |
C25 |
35.4 |
180.0 |
C3 |
C2 |
C24 |
H24 |
215.4 |
0.0 |
C4 |
C3 |
C2 |
O9 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
C5 |
0.1 |
359.8 |
C2 |
C3 |
C4 |
N11 |
179.8 |
180.0 |
C2 |
C3 |
O9 |
C10 |
180.3 |
180.0 |
C24 |
C2 |
C1 |
C6 |
180.0 |
180.1 |
C24 |
C2 |
C1 |
H1 |
0.0 |
0.0 |
C1 |
C2 |
C24 |
C3 |
180.1 |
179.9 |
C24 |
C2 |
C3 |
C4 |
180.0 |
179.9 |
C24 |
C2 |
C3 |
O9 |
359.9 |
359.9 |
C25 |
C24 |
C2 |
H24 |
180.0 |
180.0 |
C2 |
C24 |
C25 |
H251 |
180.0 |
180.0 |
C2 |
C24 |
C25 |
H252 |
0.0 |
0.0 |
C4 |
C3 |
C2 |
C24 |
180.0 |
179.9 |
C2 |
C3 |
C4 |
O9 |
179.9 |
180.0 |
C4 |
C3 |
O9 |
C10 |
0.2 |
0.0 |
C5 |
C4 |
C3 |
N11 |
180.2 |
179.8 |
C3 |
C4 |
C5 |
C6 |
360.0 |
0.5 |
C3 |
C4 |
C5 |
H5 |
179.9 |
180.4 |
C3 |
C4 |
N11 |
C10 |
360.0 |
0.0 |
O9 |
C3 |
C2 |
C24 |
359.9 |
359.9 |
C2 |
C3 |
O9 |
C4 |
180.1 |
180.0 |
O9 |
C3 |
C4 |
C5 |
180.2 |
179.8 |
O9 |
C3 |
C4 |
N11 |
359.9 |
360.0 |
C3 |
O9 |
C10 |
N11 |
359.8 |
0.0 |
C3 |
O9 |
C10 |
C12 |
178.9 |
180.0 |
C1 |
C6 |
C5 |
C4 |
0.0 |
359.5 |
C5 |
C4 |
C3 |
O9 |
180.2 |
179.8 |
C3 |
C4 |
C5 |
N11 |
179.7 |
180.3 |
C5 |
C4 |
N11 |
C10 |
179.7 |
180.3 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
O21 |
179.6 |
179.8 |
N11 |
C4 |
C3 |
O9 |
359.9 |
360.0 |
C3 |
C4 |
N11 |
C5 |
180.3 |
179.8 |
N11 |
C4 |
C5 |
C6 |
180.3 |
180.2 |
N11 |
C4 |
C5 |
H5 |
0.2 |
0.1 |
O9 |
C10 |
N11 |
C4 |
0.1 |
360.0 |
C4 |
N11 |
C10 |
C12 |
181.1 |
180.0 |
C5 |
C6 |
C1 |
H1 |
179.9 |
180.3 |
C1 |
C6 |
C5 |
O21 |
180.4 |
179.8 |
C6 |
C5 |
C4 |
N11 |
180.3 |
180.2 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
C5 |
C6 |
O21 |
H21 |
0.4 |
269.7 |
H5 |
C5 |
C4 |
N11 |
0.2 |
0.1 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
H5 |
C5 |
C6 |
O21 |
359.6 |
359.9 |
O21 |
C6 |
C1 |
H1 |
0.3 |
0.0 |
C1 |
C6 |
O21 |
C5 |
179.6 |
180.2 |
O21 |
C6 |
C5 |
H5 |
359.6 |
359.9 |
C4 |
N11 |
C10 |
O9 |
0.1 |
360.0 |
N11 |
C10 |
O9 |
C12 |
180.9 |
180.0 |
O9 |
C10 |
C12 |
C13 |
203.0 |
180.0 |
O9 |
C10 |
C12 |
C17 |
21.8 |
359.8 |
O9 |
C10 |
N11 |
C12 |
179.1 |
180.0 |
N11 |
C10 |
C12 |
C13 |
22.0 |
360.0 |
N11 |
C10 |
C12 |
C17 |
200.8 |
179.7 |
O9 |
C10 |
C12 |
N11 |
181.0 |
180.0 |
C13 |
C12 |
C10 |
C17 |
181.2 |
180.2 |
C10 |
C12 |
C13 |
C14 |
178.9 |
180.0 |
C10 |
C12 |
C13 |
H13 |
358.9 |
359.9 |
C10 |
C12 |
C17 |
C16 |
181.2 |
179.8 |
C10 |
C12 |
C17 |
H17 |
1.2 |
0.2 |
C10 |
C12 |
C13 |
C17 |
178.8 |
179.8 |
C13 |
C12 |
C17 |
C16 |
0.0 |
359.5 |
C13 |
C12 |
C17 |
H17 |
180.1 |
179.9 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.1 |
C12 |
C13 |
C14 |
C15 |
359.9 |
360.0 |
C12 |
C13 |
C14 |
H14 |
179.9 |
180.0 |
C10 |
C12 |
C17 |
C13 |
181.2 |
180.2 |
C17 |
C12 |
C13 |
C14 |
0.0 |
0.3 |
C17 |
C12 |
C13 |
H13 |
180.0 |
180.2 |
C15 |
C16 |
C17 |
C12 |
359.9 |
0.4 |
C12 |
C17 |
C16 |
F22 |
179.7 |
180.2 |
C16 |
C17 |
C12 |
H17 |
180.0 |
179.6 |
C14 |
C13 |
C12 |
C17 |
0.0 |
0.3 |
C12 |
C13 |
C14 |
H13 |
180.0 |
179.9 |
C15 |
C14 |
C13 |
H14 |
180.0 |
179.9 |
C13 |
C14 |
C15 |
C16 |
0.1 |
0.0 |
C13 |
C14 |
C15 |
O23 |
180.3 |
180.0 |
H13 |
C13 |
C12 |
C17 |
180.0 |
180.2 |
C12 |
C13 |
H13 |
C14 |
180.0 |
180.1 |
H13 |
C13 |
C14 |
C15 |
179.9 |
180.1 |
H13 |
C13 |
C14 |
H14 |
359.9 |
0.1 |
C15 |
C14 |
C13 |
H13 |
179.9 |
180.1 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.1 |
C16 |
C15 |
C14 |
O23 |
179.8 |
180.0 |
C14 |
C15 |
C16 |
C17 |
360.0 |
359.8 |
C14 |
C15 |
C16 |
F22 |
180.2 |
180.0 |
C14 |
C15 |
O23 |
H23 |
180.0 |
90.0 |
H14 |
C14 |
C13 |
H13 |
359.9 |
0.1 |
C13 |
C14 |
H14 |
C15 |
180.0 |
179.9 |
H14 |
C14 |
C15 |
C16 |
180.1 |
179.9 |
H14 |
C14 |
C15 |
O23 |
0.3 |
359.9 |
C12 |
C17 |
C16 |
C15 |
359.9 |
0.4 |
C16 |
C15 |
C14 |
H14 |
180.1 |
179.9 |
C14 |
C15 |
C16 |
O23 |
180.2 |
180.0 |
C16 |
C15 |
O23 |
H23 |
0.2 |
270.0 |
C17 |
C16 |
C15 |
F22 |
179.8 |
179.8 |
C15 |
C16 |
C17 |
H17 |
179.9 |
180.0 |
O23 |
C15 |
C14 |
H14 |
0.3 |
359.9 |
C14 |
C15 |
O23 |
C16 |
179.8 |
180.0 |
O23 |
C15 |
C16 |
C17 |
179.8 |
179.8 |
O23 |
C15 |
C16 |
F22 |
360.0 |
0.0 |
C12 |
C17 |
C16 |
H17 |
180.0 |
180.4 |
C17 |
C16 |
C15 |
O23 |
179.8 |
179.8 |
C15 |
C16 |
C17 |
F22 |
180.2 |
180.2 |
F22 |
C16 |
C15 |
O23 |
360.0 |
0.0 |
C15 |
C16 |
F22 |
C17 |
179.8 |
179.8 |
F22 |
C16 |
C17 |
H17 |
359.7 |
359.8 |
C12 |
C17 |
H17 |
C16 |
180.0 |
179.6 |
H17 |
C17 |
C16 |
F22 |
359.7 |
359.8 |
C2 |
C24 |
C25 |
H24 |
180.0 |
180.0 |
H251 |
C25 |
C24 |
H252 |
180.0 |
180.0 |
C2 |
C24 |
H24 |
C25 |
180.0 |
180.0 |
H24 |
C24 |
C25 |
H251 |
360.0 |
0.0 |
H24 |
C24 |
C25 |
H252 |
180.0 |
180.1 |
H251 |
C25 |
C24 |
H24 |
360.0 |
0.0 |
C24 |
C25 |
H251 |
H252 |
180.0 |
180.0 |
H252 |
C25 |
C24 |
H24 |
180.0 |
180.1 |
C24 |
C25 |
H252 |
H251 |
180.0 |
180.0 |