PDB Chemical Component 040
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 040
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C01 |
C02 |
1.495 |
1.507 |
| C01 |
H01 |
1.100 |
1.090 |
| C01 |
H01A |
1.100 |
1.090 |
| C01 |
H01B |
1.100 |
1.090 |
| C02 |
C15 |
1.490 |
1.378 |
| C02 |
C03 |
1.479 |
1.399 |
| C04 |
C03 |
1.475 |
1.472 |
| C03 |
C12 |
1.536 |
1.399 |
| O05 |
C04 |
1.453 |
1.213 |
| C04 |
C06 |
1.274 |
1.506 |
| C07 |
C06 |
1.411 |
1.506 |
| C06 |
H06 |
1.100 |
1.090 |
| C06 |
H06A |
1.100 |
1.090 |
| O11 |
C07 |
1.295 |
1.208 |
| C07 |
C08 |
1.422 |
1.491 |
| O09 |
C08 |
1.466 |
1.213 |
| C08 |
O10 |
1.338 |
1.345 |
| O10 |
HO10 |
0.950 |
0.967 |
| C12 |
C13 |
1.458 |
1.379 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.508 |
1.383 |
| C13 |
H13 |
1.080 |
1.080 |
| C15 |
C14 |
1.460 |
1.385 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
Bond Angles for 040
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C01 |
H01 |
109.5 |
109.5 |
| C02 |
C01 |
H01A |
109.5 |
109.5 |
| C02 |
C01 |
H01B |
109.5 |
109.5 |
| C01 |
C02 |
C15 |
114.8 |
120.0 |
| C01 |
C02 |
C03 |
130.7 |
120.1 |
| H01 |
C01 |
H01A |
109.5 |
109.5 |
| H01 |
C01 |
H01B |
109.5 |
109.4 |
| H01A |
C01 |
H01B |
109.5 |
109.5 |
| C03 |
C02 |
C15 |
114.4 |
119.9 |
| C02 |
C15 |
C14 |
124.8 |
120.2 |
| C02 |
C15 |
H15 |
117.6 |
120.0 |
| C02 |
C03 |
C12 |
123.8 |
119.6 |
| C04 |
C03 |
C12 |
117.1 |
120.2 |
| C03 |
C12 |
C13 |
117.7 |
119.8 |
| C03 |
C12 |
H12 |
121.1 |
120.0 |
| O05 |
C04 |
C06 |
127.6 |
120.0 |
| C04 |
C06 |
H06 |
105.7 |
109.5 |
| C04 |
C06 |
H06A |
105.7 |
109.5 |
| C07 |
C06 |
H06 |
105.7 |
109.4 |
| C07 |
C06 |
H06A |
105.6 |
109.5 |
| H06 |
C06 |
H06A |
113.0 |
109.4 |
| C07 |
C08 |
O10 |
136.1 |
120.1 |
| O09 |
C08 |
O10 |
102.7 |
120.0 |
| C08 |
O10 |
HO10 |
109.5 |
117.0 |
| C13 |
C12 |
H12 |
121.1 |
120.1 |
| C12 |
C13 |
H13 |
119.8 |
119.9 |
| C14 |
C13 |
H13 |
119.8 |
119.9 |
| C15 |
C14 |
H14 |
120.6 |
119.8 |
Torsion Angles for 040
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H01 |
C01 |
C02 |
H01A |
240.0 |
240.0 |
| H01 |
C01 |
C02 |
H01B |
120.0 |
120.0 |
| H01A |
C01 |
C02 |
H01B |
240.0 |
240.0 |
| C03 |
C02 |
C01 |
C15 |
177.9 |
180.3 |
| C01 |
C02 |
C15 |
C14 |
178.8 |
179.8 |
| C01 |
C02 |
C15 |
H15 |
358.8 |
0.0 |
| C01 |
C02 |
C03 |
C12 |
181.6 |
180.0 |
| C02 |
C01 |
H01 |
H01A |
120.0 |
120.0 |
| C02 |
C01 |
H01 |
H01B |
240.0 |
240.0 |
| H01 |
C01 |
C02 |
C15 |
90.7 |
96.6 |
| H01 |
C01 |
C02 |
C03 |
268.6 |
276.9 |
| H01A |
C01 |
H01 |
H01B |
120.0 |
120.0 |
| C02 |
C01 |
H01A |
H01 |
240.0 |
240.0 |
| C02 |
C01 |
H01A |
H01B |
120.0 |
120.0 |
| H01A |
C01 |
C02 |
C15 |
210.7 |
216.6 |
| H01A |
C01 |
C02 |
C03 |
28.6 |
36.9 |
| H01 |
C01 |
H01A |
H01B |
240.0 |
240.0 |
| C02 |
C01 |
H01B |
H01 |
120.0 |
120.0 |
| C02 |
C01 |
H01B |
H01A |
240.0 |
240.0 |
| H01B |
C01 |
C02 |
C15 |
330.8 |
336.6 |
| H01B |
C01 |
C02 |
C03 |
148.6 |
156.9 |
| H01 |
C01 |
H01B |
H01A |
120.0 |
120.0 |
| C15 |
C02 |
C01 |
H01 |
90.7 |
96.6 |
| C15 |
C02 |
C01 |
H01A |
210.7 |
216.6 |
| C15 |
C02 |
C01 |
H01B |
330.8 |
336.6 |
| C01 |
C02 |
C15 |
C03 |
178.2 |
180.3 |
| C15 |
C02 |
C03 |
C12 |
359.4 |
0.3 |
| C02 |
C15 |
C14 |
H14 |
178.6 |
180.3 |
| C03 |
C02 |
C01 |
H01 |
268.6 |
276.9 |
| C03 |
C02 |
C01 |
H01A |
28.6 |
36.9 |
| C03 |
C02 |
C01 |
H01B |
148.6 |
156.9 |
| C01 |
C02 |
C03 |
C15 |
182.1 |
179.7 |
| C03 |
C02 |
C15 |
C14 |
0.5 |
359.5 |
| C03 |
C02 |
C15 |
H15 |
180.5 |
179.8 |
| C04 |
C03 |
C02 |
C12 |
177.9 |
180.0 |
| C02 |
C03 |
C12 |
C13 |
1.5 |
360.0 |
| C02 |
C03 |
C12 |
H12 |
181.5 |
180.0 |
| C04 |
C03 |
C02 |
C15 |
177.4 |
180.3 |
| C02 |
C03 |
C04 |
C12 |
181.9 |
180.0 |
| C04 |
C03 |
C12 |
C13 |
183.5 |
180.0 |
| C04 |
C03 |
C12 |
H12 |
3.5 |
360.0 |
| C12 |
C03 |
C02 |
C15 |
359.4 |
0.3 |
| C13 |
C12 |
C03 |
H12 |
180.0 |
180.0 |
| C03 |
C12 |
C13 |
H13 |
177.7 |
180.0 |
| O05 |
C04 |
C03 |
C12 |
125.8 |
186.0 |
| O05 |
C04 |
C06 |
H06 |
121.1 |
120.0 |
| O05 |
C04 |
C06 |
H06A |
241.1 |
240.0 |
| C06 |
C04 |
C03 |
C12 |
308.5 |
6.0 |
| C07 |
C06 |
C04 |
H06 |
240.0 |
240.0 |
| C07 |
C06 |
C04 |
H06A |
120.0 |
120.0 |
| H06 |
C06 |
C04 |
H06A |
240.0 |
240.0 |
| C04 |
C06 |
C07 |
H06 |
120.0 |
120.1 |
| C04 |
C06 |
C07 |
H06A |
240.0 |
240.0 |
| H06 |
C06 |
C07 |
H06A |
120.0 |
120.0 |
| C04 |
C06 |
H06 |
H06A |
115.1 |
120.0 |
| C07 |
C06 |
H06 |
H06A |
245.0 |
240.0 |
| C04 |
C06 |
H06A |
H06 |
244.9 |
240.0 |
| C07 |
C06 |
H06A |
H06 |
115.0 |
119.9 |
| O11 |
C07 |
C06 |
H06 |
240.3 |
240.0 |
| O11 |
C07 |
C06 |
H06A |
120.4 |
120.0 |
| C08 |
C07 |
C06 |
H06 |
95.3 |
60.0 |
| C08 |
C07 |
C06 |
H06A |
335.3 |
300.0 |
| O09 |
C08 |
C07 |
O10 |
149.7 |
179.9 |
| C07 |
C08 |
O10 |
HO10 |
152.3 |
180.0 |
| C07 |
C08 |
O09 |
O10 |
201.0 |
180.1 |
| O09 |
C08 |
O10 |
HO10 |
360.0 |
0.1 |
| C03 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
| C03 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
H13 |
357.7 |
0.0 |
| C02 |
C15 |
C14 |
C13 |
358.6 |
0.6 |
| C14 |
C13 |
C12 |
H12 |
177.7 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
357.7 |
0.0 |
| C02 |
C15 |
C14 |
H15 |
180.0 |
180.3 |
| C15 |
C14 |
C13 |
H13 |
182.3 |
179.7 |
| H14 |
C14 |
C13 |
H13 |
2.3 |
0.0 |
| C02 |
C15 |
H15 |
C14 |
180.0 |
179.7 |
| H15 |
C15 |
C14 |
H14 |
358.6 |
360.0 |