PDB Chemical Component 03Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 03Z
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.456 |
1.384 |
| C5 |
C1 |
1.475 |
1.383 |
| C1 |
H1 |
1.079 |
1.079 |
| C13 |
N1 |
1.348 |
1.313 |
| N1 |
C14 |
1.334 |
1.302 |
| O1 |
S2 |
1.599 |
1.421 |
| C12 |
S1 |
1.697 |
1.762 |
| C14 |
S1 |
1.730 |
1.708 |
| C3 |
C2 |
1.432 |
1.380 |
| C2 |
H2 |
1.080 |
1.079 |
| N2 |
C13 |
1.348 |
1.386 |
| N2 |
HN2 |
1.000 |
0.971 |
| N2 |
HN2A |
1.000 |
0.970 |
| S2 |
O2 |
1.609 |
1.422 |
| C18 |
S2 |
1.599 |
1.762 |
| S2 |
N4 |
1.562 |
1.656 |
| C10 |
C3 |
1.456 |
1.395 |
| C3 |
H3 |
1.080 |
1.080 |
| C14 |
N3 |
1.374 |
1.378 |
| N3 |
C15 |
1.379 |
1.397 |
| N3 |
HN3 |
1.000 |
0.970 |
| O3 |
C11 |
1.343 |
1.220 |
| C10 |
C4 |
1.475 |
1.395 |
| C4 |
C5 |
1.435 |
1.380 |
| C4 |
H4 |
1.080 |
1.080 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.970 |
| C5 |
H5 |
1.079 |
1.081 |
| C11 |
C10 |
1.483 |
1.480 |
| C11 |
C12 |
1.494 |
1.407 |
| C13 |
C12 |
1.370 |
1.383 |
| C15 |
C20 |
1.456 |
1.389 |
| C15 |
C16 |
1.480 |
1.390 |
| C16 |
C17 |
1.411 |
1.382 |
| C16 |
H16 |
1.080 |
1.079 |
| C17 |
C18 |
1.442 |
1.383 |
| C17 |
H17 |
1.080 |
1.079 |
| C19 |
C18 |
1.457 |
1.383 |
| C20 |
C19 |
1.411 |
1.381 |
| C19 |
H19 |
1.080 |
1.080 |
| C20 |
H20 |
1.080 |
1.080 |
Bond Angles for 03Z
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
120.1 |
119.9 |
| C5 |
C1 |
H1 |
120.1 |
119.9 |
| C13 |
N1 |
C14 |
111.3 |
117.3 |
| N1 |
C14 |
S1 |
114.1 |
110.9 |
| N1 |
C14 |
N3 |
118.6 |
124.6 |
| O1 |
S2 |
O2 |
111.5 |
123.1 |
| O1 |
S2 |
N4 |
108.9 |
106.4 |
| C3 |
C2 |
H2 |
119.6 |
119.9 |
| C13 |
N2 |
HN2 |
109.5 |
119.9 |
| C13 |
N2 |
HN2A |
109.5 |
120.0 |
| N2 |
C13 |
C12 |
124.1 |
123.2 |
| HN2 |
N2 |
HN2A |
109.5 |
120.0 |
| S2 |
N4 |
HN4 |
109.5 |
120.0 |
| S2 |
N4 |
HN4A |
109.5 |
120.0 |
| C10 |
C3 |
H3 |
120.0 |
120.1 |
| C14 |
N3 |
C15 |
129.0 |
120.0 |
| C14 |
N3 |
HN3 |
115.5 |
119.9 |
| C15 |
N3 |
HN3 |
115.5 |
120.1 |
| N3 |
C15 |
C20 |
117.4 |
120.1 |
| N3 |
C15 |
C16 |
124.2 |
120.1 |
| O3 |
C11 |
C10 |
120.0 |
120.0 |
| O3 |
C11 |
C12 |
118.7 |
119.9 |
| C10 |
C4 |
H4 |
119.5 |
120.1 |
| C5 |
C4 |
H4 |
119.6 |
120.1 |
| C4 |
C5 |
H5 |
120.5 |
119.9 |
| HN4 |
N4 |
HN4A |
109.4 |
120.0 |
| C16 |
C15 |
C20 |
118.4 |
119.8 |
| C15 |
C20 |
C19 |
119.9 |
120.0 |
| C15 |
C20 |
H20 |
120.0 |
120.0 |
| C15 |
C16 |
C17 |
121.4 |
119.9 |
| C15 |
C16 |
H16 |
119.3 |
120.1 |
| C17 |
C16 |
H16 |
119.3 |
120.0 |
| C16 |
C17 |
C18 |
119.2 |
120.0 |
| C16 |
C17 |
H17 |
120.4 |
120.0 |
| C18 |
C17 |
H17 |
120.4 |
120.0 |
| C20 |
C19 |
H19 |
119.6 |
120.0 |
Torsion Angles for 03Z
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C2 |
C1 |
C5 |
H1 |
180.0 |
179.8 |
| C13 |
N1 |
C14 |
S1 |
359.9 |
0.0 |
| C13 |
N1 |
C14 |
N3 |
179.9 |
180.0 |
| N1 |
C14 |
N3 |
C15 |
156.1 |
3.2 |
| N1 |
C14 |
N3 |
HN3 |
336.1 |
183.2 |
| O1 |
S2 |
N4 |
HN4 |
180.0 |
353.5 |
| O1 |
S2 |
N4 |
HN4A |
300.0 |
173.6 |
| N1 |
C14 |
S1 |
C12 |
359.7 |
0.0 |
| N1 |
C14 |
S1 |
N3 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
180.1 |
180.1 |
| H2 |
C2 |
C1 |
H1 |
0.1 |
0.0 |
| N2 |
C13 |
N1 |
C14 |
179.8 |
180.0 |
| HN2 |
N2 |
C13 |
HN2A |
240.0 |
180.0 |
| C13 |
N2 |
HN2 |
HN2A |
120.0 |
180.0 |
| HN2 |
N2 |
C13 |
C12 |
179.1 |
180.0 |
| C13 |
N2 |
HN2A |
HN2 |
240.0 |
180.0 |
| HN2A |
N2 |
C13 |
C12 |
299.2 |
0.0 |
| O1 |
S2 |
O2 |
N4 |
121.2 |
122.9 |
| C18 |
S2 |
N4 |
HN4 |
63.3 |
240.0 |
| C18 |
S2 |
N4 |
HN4A |
183.2 |
60.0 |
| O1 |
S2 |
N4 |
O2 |
237.2 |
227.1 |
| HN4 |
N4 |
S2 |
HN4A |
240.0 |
180.0 |
| C10 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
0.0 |
360.0 |
| N1 |
C14 |
N3 |
S1 |
180.0 |
180.0 |
| C15 |
N3 |
C14 |
HN3 |
180.0 |
180.0 |
| C14 |
N3 |
C15 |
C20 |
180.0 |
212.0 |
| C14 |
N3 |
C15 |
C16 |
359.7 |
32.3 |
| C14 |
N3 |
C15 |
HN3 |
180.0 |
180.0 |
| C16 |
C15 |
N3 |
C20 |
179.8 |
180.3 |
| N3 |
C15 |
C20 |
C19 |
179.6 |
179.8 |
| N3 |
C15 |
C20 |
H20 |
359.6 |
0.1 |
| N3 |
C15 |
C16 |
C17 |
180.5 |
180.0 |
| N3 |
C15 |
C16 |
H16 |
0.5 |
359.9 |
| C14 |
N3 |
HN3 |
C15 |
180.0 |
180.0 |
| HN3 |
N3 |
C15 |
C20 |
360.0 |
32.1 |
| HN3 |
N3 |
C15 |
C16 |
179.7 |
212.4 |
| C4 |
C10 |
C3 |
H3 |
179.8 |
179.7 |
| O3 |
C11 |
C10 |
C4 |
232.6 |
205.7 |
| C5 |
C4 |
C10 |
H4 |
180.0 |
180.0 |
| C10 |
C4 |
C5 |
H5 |
179.8 |
180.0 |
| C4 |
C5 |
C1 |
H1 |
179.9 |
180.0 |
| C10 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
359.8 |
0.0 |
| S2 |
N4 |
HN4 |
HN4A |
120.0 |
180.0 |
| S2 |
N4 |
HN4A |
HN4 |
240.0 |
180.0 |
| H5 |
C5 |
C1 |
H1 |
359.9 |
359.9 |
| H5 |
C5 |
C4 |
H4 |
359.8 |
0.0 |
| C11 |
C10 |
C3 |
H3 |
0.4 |
0.0 |
| O3 |
C11 |
C10 |
C12 |
181.2 |
179.9 |
| C11 |
C10 |
C4 |
H4 |
359.7 |
0.0 |
| N2 |
C13 |
C12 |
C11 |
359.8 |
359.9 |
| O3 |
C11 |
C12 |
C10 |
178.8 |
180.1 |
| C12 |
C13 |
N1 |
C14 |
0.5 |
360.0 |
| C12 |
C13 |
N2 |
HN2 |
179.1 |
180.0 |
| C12 |
C13 |
N2 |
HN2A |
299.2 |
0.0 |
| C20 |
C15 |
N3 |
HN3 |
360.0 |
32.1 |
| N3 |
C15 |
C20 |
C16 |
179.8 |
180.3 |
| C20 |
C15 |
C16 |
C17 |
0.3 |
0.3 |
| C20 |
C15 |
C16 |
H16 |
180.2 |
180.2 |
| C15 |
C20 |
C19 |
H19 |
180.0 |
180.3 |
| C16 |
C15 |
N3 |
HN3 |
179.7 |
212.4 |
| N3 |
C15 |
C16 |
C20 |
180.2 |
179.7 |
| C16 |
C15 |
C20 |
C19 |
359.8 |
359.5 |
| C16 |
C15 |
C20 |
H20 |
179.8 |
179.8 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
| C15 |
C16 |
C17 |
C18 |
359.9 |
0.0 |
| C15 |
C16 |
C17 |
H17 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
C20 |
0.3 |
0.3 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.1 |
| H16 |
C16 |
C15 |
C20 |
180.2 |
180.2 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
| H16 |
C16 |
C17 |
C18 |
179.9 |
180.1 |
| H16 |
C16 |
C17 |
H17 |
360.0 |
0.0 |
| C18 |
C17 |
C16 |
H16 |
179.9 |
180.1 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
179.9 |
| H17 |
C17 |
C16 |
H16 |
360.0 |
0.0 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
180.1 |
| C15 |
C20 |
C19 |
C18 |
359.9 |
0.5 |
| C19 |
C18 |
C17 |
H17 |
179.8 |
180.0 |
| C15 |
C20 |
C19 |
H20 |
180.0 |
180.3 |
| C15 |
C20 |
H20 |
C19 |
180.0 |
179.7 |
| H20 |
C20 |
C19 |
H19 |
360.0 |
359.9 |