PDB Chemical Component 03X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 03X
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7 |
N1 |
1.324 |
1.312 |
| C6 |
N1 |
1.346 |
1.339 |
| C23 |
N3 |
1.491 |
1.465 |
| N3 |
C20 |
1.344 |
1.346 |
| N3 |
N4 |
1.250 |
1.398 |
| C4 |
C5 |
1.398 |
1.403 |
| C4 |
C1 |
1.402 |
1.366 |
| C4 |
H4 |
1.080 |
1.080 |
| C9 |
C5 |
1.396 |
1.413 |
| C5 |
C6 |
1.401 |
1.417 |
| C6 |
C3 |
1.390 |
1.405 |
| C8 |
C7 |
1.393 |
1.390 |
| C7 |
H7 |
1.081 |
1.080 |
| C9 |
C8 |
1.398 |
1.384 |
| C8 |
H8 |
1.080 |
1.080 |
| C13 |
C10 |
1.400 |
1.389 |
| C17 |
C10 |
1.393 |
1.387 |
| C10 |
O1 |
1.365 |
1.360 |
| C14 |
C13 |
1.398 |
1.383 |
| C13 |
F1 |
1.351 |
1.351 |
| N2 |
C15 |
1.332 |
1.401 |
| C15 |
C14 |
1.399 |
1.388 |
| C15 |
C16 |
1.394 |
1.389 |
| C16 |
C17 |
1.389 |
1.381 |
| C17 |
H17 |
1.080 |
1.080 |
| C22 |
C20 |
1.531 |
1.506 |
| C20 |
C19 |
1.382 |
1.382 |
| N4 |
C21 |
1.337 |
1.349 |
| C19 |
C21 |
1.382 |
1.472 |
| C21 |
O5 |
1.229 |
1.217 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.090 |
| C22 |
H22B |
1.100 |
1.091 |
| C29 |
C24 |
1.399 |
1.388 |
| N4 |
C24 |
1.349 |
1.399 |
| C24 |
C25 |
1.395 |
1.389 |
| C27 |
C26 |
1.393 |
1.383 |
| C25 |
C26 |
1.398 |
1.381 |
| C26 |
H26 |
1.081 |
1.080 |
| C29 |
C28 |
1.397 |
1.382 |
| C28 |
C27 |
1.393 |
1.382 |
| C28 |
H28 |
1.080 |
1.080 |
| O3 |
C11 |
1.449 |
1.429 |
| C11 |
H11 |
1.101 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C11 |
H11B |
1.100 |
1.090 |
| C2 |
O3 |
1.373 |
1.359 |
| C1 |
C2 |
1.395 |
1.402 |
| C2 |
C3 |
1.399 |
1.366 |
| C3 |
H3 |
1.080 |
1.081 |
| O2 |
C1 |
1.371 |
1.359 |
| C12 |
O2 |
1.438 |
1.429 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C12 |
H12B |
1.100 |
1.090 |
| O1 |
C9 |
1.376 |
1.356 |
| C14 |
H14 |
1.080 |
1.081 |
| C16 |
H16 |
1.080 |
1.080 |
| C18 |
N2 |
1.335 |
1.347 |
| N2 |
HN2 |
1.000 |
0.969 |
| C19 |
C18 |
1.540 |
1.468 |
| O4 |
C18 |
1.232 |
1.216 |
| C23 |
H23 |
1.101 |
1.091 |
| C23 |
H23A |
1.100 |
1.089 |
| C23 |
H23B |
1.100 |
1.090 |
| C25 |
H25 |
1.080 |
1.080 |
| C27 |
H27 |
1.080 |
1.079 |
| C29 |
H29 |
1.080 |
1.079 |
Bond Angles for 03X
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C23 |
N3 |
N4 |
125.5 |
125.0 |
| C20 |
N3 |
N4 |
110.9 |
109.9 |
| N3 |
C20 |
C19 |
107.3 |
108.5 |
| N3 |
N4 |
C21 |
109.6 |
108.6 |
| N3 |
N4 |
C24 |
127.8 |
125.7 |
| C5 |
C4 |
C1 |
120.2 |
119.7 |
| C5 |
C4 |
H4 |
119.9 |
120.2 |
| C4 |
C5 |
C6 |
119.6 |
119.8 |
| C1 |
C4 |
H4 |
119.9 |
120.2 |
| C4 |
C1 |
C2 |
120.1 |
120.7 |
| C5 |
C6 |
C3 |
120.0 |
119.2 |
| C6 |
C3 |
C2 |
120.7 |
119.8 |
| C6 |
C3 |
H3 |
119.7 |
120.1 |
| C8 |
C7 |
H7 |
119.7 |
119.0 |
| C9 |
C8 |
H8 |
119.9 |
120.1 |
| C13 |
C10 |
O1 |
120.4 |
120.0 |
| C17 |
C10 |
O1 |
119.5 |
120.0 |
| C10 |
O1 |
C9 |
115.2 |
118.0 |
| C14 |
C13 |
F1 |
120.1 |
120.0 |
| C14 |
C15 |
C16 |
120.0 |
120.0 |
| C15 |
C14 |
H14 |
120.3 |
120.0 |
| C15 |
C16 |
C17 |
120.7 |
120.0 |
| C15 |
C16 |
H16 |
119.7 |
120.0 |
| C16 |
C17 |
H17 |
120.2 |
120.0 |
| C22 |
C20 |
C19 |
125.7 |
125.7 |
| C20 |
C19 |
C21 |
103.9 |
106.5 |
| C20 |
C19 |
C18 |
130.6 |
126.8 |
| C19 |
C21 |
O5 |
124.9 |
126.7 |
| H22 |
C22 |
H22A |
109.5 |
109.4 |
| H22 |
C22 |
H22B |
109.5 |
109.5 |
| H22A |
C22 |
H22B |
109.5 |
109.4 |
| N4 |
C24 |
C25 |
122.2 |
120.1 |
| C24 |
C25 |
C26 |
120.3 |
119.9 |
| C24 |
C25 |
H25 |
119.9 |
120.0 |
| C27 |
C26 |
H26 |
119.6 |
120.0 |
| C25 |
C26 |
H26 |
119.6 |
120.0 |
| C29 |
C28 |
H28 |
120.1 |
119.9 |
| C27 |
C28 |
H28 |
120.1 |
120.0 |
| C28 |
C27 |
H27 |
120.3 |
119.9 |
| O3 |
C11 |
H11 |
109.5 |
109.5 |
| O3 |
C11 |
H11A |
109.4 |
109.5 |
| O3 |
C11 |
H11B |
109.5 |
109.5 |
| H11 |
C11 |
H11A |
109.5 |
109.4 |
| H11 |
C11 |
H11B |
109.4 |
109.5 |
| H11A |
C11 |
H11B |
109.5 |
109.5 |
| C2 |
C3 |
H3 |
119.7 |
120.0 |
| H12 |
C12 |
H12A |
109.5 |
109.5 |
| H12 |
C12 |
H12B |
109.5 |
109.5 |
| H12A |
C12 |
H12B |
109.5 |
109.5 |
| C18 |
N2 |
HN2 |
115.2 |
120.0 |
| H23 |
C23 |
H23A |
109.4 |
109.5 |
| H23 |
C23 |
H23B |
109.5 |
109.5 |
| H23A |
C23 |
H23B |
109.5 |
109.5 |
Torsion Angles for 03X
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C20 |
N3 |
C23 |
N4 |
180.0 |
179.7 |
| C23 |
N3 |
N4 |
C21 |
179.4 |
179.8 |
| C23 |
N3 |
N4 |
C24 |
1.9 |
359.8 |
| C23 |
N3 |
C20 |
N4 |
180.0 |
180.3 |
| C20 |
N3 |
N4 |
C21 |
359.5 |
0.0 |
| C20 |
N3 |
N4 |
C24 |
181.9 |
180.0 |
| C22 |
C20 |
N3 |
C19 |
180.7 |
180.0 |
| N3 |
C20 |
C19 |
C21 |
1.0 |
360.0 |
| N3 |
C20 |
C19 |
C18 |
179.2 |
180.0 |
| N4 |
N3 |
C20 |
C19 |
359.7 |
0.0 |
| N3 |
N4 |
C24 |
C25 |
245.8 |
311.8 |
| C1 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
| C5 |
C4 |
C1 |
C2 |
359.4 |
0.0 |
| C4 |
C5 |
C6 |
C3 |
359.7 |
359.9 |
| C5 |
C4 |
C1 |
H4 |
180.0 |
179.9 |
| C1 |
C4 |
C5 |
C6 |
0.4 |
0.0 |
| C5 |
C4 |
H4 |
C1 |
180.0 |
180.1 |
| H4 |
C4 |
C5 |
C6 |
180.4 |
180.0 |
| H4 |
C4 |
C1 |
C2 |
179.4 |
180.1 |
| C9 |
C5 |
C4 |
H4 |
0.3 |
359.9 |
| C6 |
C5 |
C4 |
C1 |
0.4 |
0.0 |
| C6 |
C5 |
C4 |
H4 |
180.4 |
180.0 |
| C5 |
C6 |
C3 |
C2 |
0.5 |
0.0 |
| C5 |
C6 |
C3 |
H3 |
180.5 |
180.0 |
| C2 |
C3 |
C6 |
H3 |
180.0 |
180.1 |
| C9 |
C8 |
C7 |
H7 |
180.0 |
180.0 |
| H8 |
C8 |
C7 |
H7 |
0.0 |
0.0 |
| C17 |
C10 |
C13 |
O1 |
180.2 |
180.3 |
| C13 |
C10 |
O1 |
C9 |
96.6 |
81.1 |
| C13 |
C10 |
C17 |
O1 |
179.8 |
179.7 |
| C17 |
C10 |
O1 |
C9 |
276.3 |
260.8 |
| F1 |
C13 |
C10 |
O1 |
359.6 |
359.9 |
| N2 |
C15 |
C14 |
H14 |
359.7 |
0.3 |
| N2 |
C15 |
C16 |
H16 |
0.5 |
359.7 |
| C15 |
C14 |
C13 |
F1 |
180.3 |
180.1 |
| C14 |
C15 |
C16 |
C17 |
0.1 |
0.3 |
| C14 |
C15 |
C16 |
H16 |
180.1 |
180.0 |
| C16 |
C15 |
C14 |
H14 |
180.1 |
180.0 |
| C15 |
C16 |
C17 |
H17 |
179.9 |
180.0 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
179.7 |
| H17 |
C17 |
C10 |
O1 |
0.0 |
360.0 |
| C22 |
C20 |
N3 |
N4 |
180.4 |
180.0 |
| N3 |
C20 |
C22 |
C19 |
179.2 |
180.0 |
| C22 |
C20 |
C19 |
C21 |
180.3 |
180.0 |
| C22 |
C20 |
C19 |
C18 |
358.5 |
360.0 |
| C19 |
C20 |
N3 |
N4 |
359.7 |
0.0 |
| C20 |
C19 |
C21 |
O5 |
180.2 |
180.0 |
| N3 |
N4 |
C21 |
C24 |
182.3 |
180.0 |
| N3 |
N4 |
C21 |
C19 |
1.2 |
360.0 |
| C20 |
C19 |
C21 |
C18 |
178.3 |
180.0 |
| N3 |
N4 |
C21 |
O5 |
179.7 |
180.0 |
| H22 |
C22 |
C20 |
C19 |
0.8 |
270.0 |
| H22A |
C22 |
H22 |
H22B |
120.0 |
119.9 |
| H22A |
C22 |
C20 |
C19 |
120.8 |
30.0 |
| H22 |
C22 |
H22A |
H22B |
240.0 |
240.0 |
| H22B |
C22 |
C20 |
C19 |
240.8 |
150.0 |
| H22 |
C22 |
H22B |
H22A |
120.0 |
119.9 |
| C29 |
C24 |
C25 |
H25 |
179.1 |
180.2 |
| N3 |
N4 |
C24 |
C21 |
177.2 |
180.0 |
| N4 |
C24 |
C25 |
C26 |
181.2 |
180.0 |
| N4 |
C24 |
C25 |
H25 |
1.2 |
359.9 |
| C24 |
C25 |
C26 |
H26 |
180.3 |
180.0 |
| C25 |
C26 |
C27 |
H26 |
180.0 |
180.1 |
| C24 |
C25 |
C26 |
H25 |
180.0 |
179.9 |
| C27 |
C26 |
C25 |
H26 |
180.0 |
179.9 |
| C27 |
C28 |
C29 |
H28 |
180.0 |
179.2 |
| C29 |
C28 |
C27 |
H27 |
180.1 |
180.8 |
| C28 |
C27 |
C26 |
H26 |
180.1 |
179.5 |
| C29 |
C28 |
C27 |
H28 |
180.0 |
180.8 |
| H28 |
C28 |
C27 |
H27 |
0.1 |
0.0 |
| H11 |
C11 |
O3 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
O3 |
H11B |
120.0 |
120.0 |
| H11A |
C11 |
O3 |
H11B |
240.0 |
240.0 |
| O3 |
C11 |
H11 |
H11A |
120.0 |
120.0 |
| O3 |
C11 |
H11 |
H11B |
240.0 |
240.0 |
| H11A |
C11 |
H11 |
H11B |
120.0 |
120.0 |
| O3 |
C11 |
H11A |
H11 |
240.0 |
240.0 |
| O3 |
C11 |
H11A |
H11B |
120.0 |
120.0 |
| H11 |
C11 |
H11A |
H11B |
240.0 |
240.0 |
| O3 |
C11 |
H11B |
H11 |
120.0 |
120.0 |
| O3 |
C11 |
H11B |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
H11B |
H11A |
120.0 |
120.0 |
| C4 |
C1 |
C2 |
O3 |
179.8 |
180.0 |
| C6 |
C3 |
C2 |
O3 |
180.3 |
179.9 |
| C2 |
O3 |
C11 |
H11 |
180.0 |
180.0 |
| C2 |
O3 |
C11 |
H11A |
300.0 |
299.9 |
| C2 |
O3 |
C11 |
H11B |
60.0 |
60.0 |
| C2 |
C1 |
C4 |
H4 |
179.4 |
180.1 |
| C1 |
C2 |
C3 |
H3 |
179.3 |
180.1 |
| C4 |
C1 |
C2 |
C3 |
0.7 |
359.9 |
| C6 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| C6 |
C3 |
H3 |
C2 |
180.0 |
180.1 |
| O2 |
C1 |
C4 |
H4 |
360.0 |
0.0 |
| H12A |
C12 |
H12 |
H12B |
120.0 |
120.0 |
| H12 |
C12 |
H12A |
H12B |
240.0 |
239.9 |
| H12 |
C12 |
H12B |
H12A |
120.0 |
120.1 |
| O1 |
C9 |
C8 |
H8 |
0.5 |
360.0 |
| H14 |
C14 |
C13 |
F1 |
0.3 |
359.8 |
| H14 |
C14 |
C15 |
C16 |
180.1 |
180.0 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
180.3 |
| H16 |
C16 |
C17 |
H17 |
359.9 |
0.3 |
| C20 |
C19 |
C18 |
N2 |
188.6 |
180.0 |
| C20 |
C19 |
C18 |
C21 |
182.1 |
180.0 |
| C18 |
C19 |
C21 |
O5 |
1.8 |
0.0 |
| C19 |
C18 |
N2 |
HN2 |
358.8 |
5.3 |
| C20 |
C19 |
C18 |
O4 |
7.5 |
360.0 |
| O4 |
C18 |
N2 |
HN2 |
179.9 |
185.3 |
| H23 |
C23 |
N3 |
N4 |
0.0 |
175.6 |
| H23A |
C23 |
H23 |
H23B |
120.0 |
120.0 |
| H23A |
C23 |
N3 |
N4 |
120.0 |
295.6 |
| H23 |
C23 |
H23A |
H23B |
240.0 |
240.0 |
| H23B |
C23 |
N3 |
N4 |
240.0 |
55.6 |
| H23 |
C23 |
H23B |
H23A |
120.0 |
120.0 |
| C24 |
C25 |
H25 |
C26 |
180.0 |
180.1 |
| H25 |
C25 |
C26 |
H26 |
0.3 |
0.1 |
| H27 |
C27 |
C26 |
H26 |
0.1 |
359.4 |
| H27 |
C27 |
C28 |
H28 |
0.1 |
0.0 |
| H29 |
C29 |
C28 |
H28 |
359.3 |
0.3 |