Atom Nomenclature for 03Q

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 03Q

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
C3 C3
O4 O4
C5 C5
C6 C6
N7 N7
C8 C8
C9 C9
C10 C10
N11 N11
C12 C12
N13 N13
C14 C14
N15 N15
C16 C16
C17 C17
N18 N18
C19 C19
O20 O20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
F28 F28
F29 F29
F30 F30
C31 C31
CL32 CL32
C33 C33
C34 C34
HO1 HO1
H2 H2
H2A H2A
H3 H3
H3A H3A
H5 H5
H5A H5A
H6 H6
H6A H6A
H8 H8
H9 H9
H12 H12
HN15 HN15
H17 H17
H22 H22
H23 H23
H24 H24
H26 H26
H33 H33