PDB Chemical Component 03P
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 03P
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C |
1.348 |
1.321 |
| N1 |
C1 |
1.354 |
1.329 |
| C8 |
N3 |
1.347 |
1.348 |
| N3 |
C7 |
1.471 |
1.464 |
| N3 |
HN3 |
1.000 |
0.970 |
| N2 |
C4 |
1.367 |
1.364 |
| C5 |
C4 |
1.395 |
1.346 |
| C4 |
H4 |
1.080 |
1.080 |
| C2 |
C5 |
1.424 |
1.459 |
| C5 |
H5 |
1.080 |
1.080 |
| C7 |
C6 |
1.525 |
1.530 |
| C6 |
N2 |
1.481 |
1.466 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.090 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| O |
C8 |
1.218 |
1.213 |
| C9 |
C8 |
1.518 |
1.507 |
| C11 |
C10 |
1.401 |
1.388 |
| C15 |
C10 |
1.403 |
1.389 |
| C10 |
N4 |
1.382 |
1.400 |
| O1 |
C13 |
1.389 |
1.360 |
| C13 |
C12 |
1.389 |
1.388 |
| C13 |
C14 |
1.396 |
1.387 |
| C14 |
C15 |
1.413 |
1.381 |
| C15 |
H15 |
1.079 |
1.080 |
| C18 |
C17 |
1.390 |
1.382 |
| C17 |
C16 |
1.396 |
1.388 |
| C17 |
H17 |
1.080 |
1.079 |
| C19 |
C20 |
1.403 |
1.382 |
| C20 |
C22 |
1.503 |
1.507 |
| C20 |
C21 |
1.397 |
1.382 |
| C16 |
C21 |
1.404 |
1.388 |
| C21 |
H21 |
1.080 |
1.080 |
| F |
C22 |
1.321 |
1.399 |
| C22 |
F2 |
1.312 |
1.399 |
| C22 |
F1 |
1.327 |
1.399 |
| C23 |
C24 |
1.525 |
1.531 |
| C24 |
H24 |
1.100 |
1.089 |
| C24 |
H24A |
1.100 |
1.090 |
| C24 |
H24B |
1.100 |
1.090 |
| C18 |
C19 |
1.393 |
1.383 |
| C19 |
H19 |
1.079 |
1.080 |
| C18 |
H18 |
1.080 |
1.080 |
| C16 |
O1 |
1.369 |
1.358 |
| CL |
C12 |
1.778 |
1.736 |
| C12 |
C11 |
1.387 |
1.382 |
| C11 |
H11 |
1.080 |
1.080 |
| C14 |
H14 |
1.080 |
1.080 |
| N4 |
C1 |
1.364 |
1.386 |
| N4 |
HN4 |
1.000 |
0.970 |
| C1 |
C3 |
1.407 |
1.400 |
| C |
N |
1.343 |
1.314 |
| C |
H |
1.080 |
1.080 |
| C3 |
C2 |
1.380 |
1.406 |
| C3 |
N2 |
1.355 |
1.374 |
| N |
C2 |
1.353 |
1.336 |
| C23 |
C9 |
1.535 |
1.530 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.100 |
1.090 |
| C25 |
C23 |
1.531 |
1.530 |
| C23 |
O2 |
1.434 |
1.430 |
| O2 |
HO2 |
0.950 |
0.967 |
| C25 |
H25 |
1.100 |
1.091 |
| C25 |
H25A |
1.100 |
1.090 |
| C25 |
H25B |
1.100 |
1.090 |
Bond Angles for 03P
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
N1 |
C |
122.6 |
121.4 |
| N1 |
C |
N |
121.6 |
122.4 |
| N1 |
C |
H |
119.2 |
118.8 |
| N1 |
C1 |
N4 |
120.6 |
120.7 |
| N1 |
C1 |
C3 |
116.3 |
118.6 |
| C8 |
N3 |
HN3 |
119.2 |
119.9 |
| C7 |
N3 |
HN3 |
119.2 |
120.0 |
| N3 |
C7 |
C6 |
110.2 |
109.5 |
| N3 |
C7 |
H7 |
109.2 |
109.4 |
| N3 |
C7 |
H7A |
109.2 |
109.5 |
| N2 |
C4 |
H4 |
124.1 |
125.1 |
| C5 |
C4 |
H4 |
124.0 |
125.1 |
| C2 |
C5 |
H5 |
129.5 |
126.5 |
| C7 |
C6 |
N2 |
120.1 |
109.5 |
| C7 |
C6 |
H6 |
106.1 |
109.5 |
| C7 |
C6 |
H6A |
106.0 |
109.5 |
| N2 |
C6 |
H6 |
106.1 |
109.5 |
| N2 |
C6 |
H6A |
106.0 |
109.5 |
| C6 |
N2 |
C3 |
128.5 |
125.1 |
| H6 |
C6 |
H6A |
112.7 |
109.5 |
| H7 |
C7 |
H7A |
109.7 |
109.5 |
| C11 |
C10 |
N4 |
121.5 |
120.0 |
| C15 |
C10 |
N4 |
119.8 |
120.0 |
| C10 |
N4 |
C1 |
123.6 |
120.0 |
| C10 |
N4 |
HN4 |
118.2 |
119.9 |
| O1 |
C13 |
C12 |
120.2 |
120.0 |
| O1 |
C13 |
C14 |
120.9 |
120.0 |
| C12 |
C13 |
C14 |
118.9 |
120.0 |
| C13 |
C12 |
C11 |
122.2 |
120.0 |
| C13 |
C14 |
C15 |
119.5 |
120.0 |
| C13 |
C14 |
H14 |
120.2 |
120.0 |
| C14 |
C15 |
H15 |
119.5 |
120.0 |
| C18 |
C17 |
C16 |
120.4 |
119.9 |
| C18 |
C17 |
H17 |
119.8 |
120.1 |
| C16 |
C17 |
H17 |
119.8 |
120.0 |
| C17 |
C16 |
C21 |
119.8 |
119.9 |
| C17 |
C16 |
O1 |
119.3 |
120.1 |
| C21 |
C20 |
C22 |
122.2 |
120.0 |
| C20 |
C22 |
F2 |
113.5 |
109.4 |
| C20 |
C22 |
F1 |
109.6 |
109.5 |
| C20 |
C21 |
H21 |
120.0 |
120.0 |
| C16 |
C21 |
H21 |
120.0 |
120.0 |
| F |
C22 |
F1 |
109.1 |
109.5 |
| F2 |
C22 |
F1 |
108.3 |
109.5 |
| C23 |
C24 |
H24 |
109.5 |
109.4 |
| C23 |
C24 |
H24A |
109.5 |
109.5 |
| C23 |
C24 |
H24B |
109.5 |
109.4 |
| H24 |
C24 |
H24A |
109.4 |
109.5 |
| H24 |
C24 |
H24B |
109.5 |
109.5 |
| H24A |
C24 |
H24B |
109.5 |
109.5 |
| C18 |
C19 |
H19 |
119.7 |
119.9 |
| CL |
C12 |
C11 |
118.3 |
120.0 |
| C12 |
C11 |
H11 |
120.2 |
120.0 |
| C1 |
N4 |
HN4 |
118.2 |
120.1 |
| N4 |
C1 |
C3 |
123.1 |
120.7 |
| C1 |
C3 |
C2 |
119.9 |
118.1 |
| C1 |
C3 |
N2 |
134.4 |
134.6 |
| N |
C |
H |
119.2 |
118.8 |
| C |
N |
C2 |
118.6 |
120.4 |
| C2 |
C3 |
N2 |
105.6 |
107.3 |
| C23 |
C9 |
H9 |
108.7 |
109.5 |
| C23 |
C9 |
H9A |
108.7 |
109.5 |
| H9 |
C9 |
H9A |
110.3 |
109.5 |
| C23 |
O2 |
HO2 |
109.5 |
113.9 |
| H25 |
C25 |
H25A |
109.5 |
109.5 |
| H25 |
C25 |
H25B |
109.5 |
109.4 |
| H25A |
C25 |
H25B |
109.5 |
109.5 |
Torsion Angles for 03P
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
N1 |
C1 |
N4 |
181.4 |
180.0 |
| C |
N1 |
C1 |
C3 |
0.9 |
360.0 |
| N |
C |
N1 |
H |
180.0 |
180.0 |
| N1 |
C |
N |
C2 |
0.4 |
0.0 |
| C1 |
N1 |
C |
N |
360.0 |
360.0 |
| C1 |
N1 |
C |
H |
180.0 |
180.0 |
| C10 |
N4 |
C1 |
N1 |
6.2 |
6.3 |
| N1 |
C1 |
N4 |
HN4 |
186.2 |
186.3 |
| N4 |
C1 |
N1 |
C3 |
180.5 |
180.0 |
| N1 |
C1 |
C3 |
C2 |
358.0 |
0.0 |
| N1 |
C1 |
C3 |
N2 |
181.8 |
180.0 |
| C7 |
N3 |
C8 |
HN3 |
180.0 |
180.1 |
| C8 |
N3 |
C7 |
H7 |
193.3 |
300.0 |
| C8 |
N3 |
C7 |
H7A |
313.3 |
60.0 |
| C8 |
N3 |
C7 |
HN3 |
180.0 |
179.9 |
| N3 |
C7 |
C6 |
N2 |
188.3 |
180.0 |
| N3 |
C7 |
C6 |
H6 |
308.3 |
300.0 |
| N3 |
C7 |
C6 |
H6A |
68.3 |
60.0 |
| H7 |
C7 |
N3 |
H7A |
240.0 |
240.0 |
| HN3 |
N3 |
C7 |
C6 |
253.3 |
0.1 |
| HN3 |
N3 |
C7 |
H7 |
13.3 |
120.1 |
| HN3 |
N3 |
C7 |
H7A |
133.3 |
240.1 |
| C5 |
C4 |
N2 |
H4 |
180.0 |
179.9 |
| N2 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
| C2 |
C5 |
C4 |
H4 |
180.4 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
0.4 |
359.9 |
| C6 |
C7 |
N3 |
HN3 |
253.3 |
0.1 |
| N3 |
C7 |
C6 |
H7 |
120.0 |
120.0 |
| N3 |
C7 |
C6 |
H7A |
240.0 |
240.0 |
| N2 |
C6 |
C7 |
H6 |
240.0 |
240.0 |
| N2 |
C6 |
C7 |
H6A |
120.0 |
120.0 |
| C7 |
C6 |
N2 |
C3 |
90.1 |
79.2 |
| H6 |
C6 |
C7 |
H6A |
240.0 |
240.0 |
| C6 |
N2 |
C4 |
H4 |
3.1 |
0.1 |
| C7 |
C6 |
N2 |
H6 |
120.0 |
120.0 |
| C7 |
C6 |
N2 |
H6A |
240.0 |
240.0 |
| H6 |
C6 |
N2 |
H6A |
120.0 |
120.0 |
| C1 |
C3 |
N2 |
C6 |
353.7 |
359.9 |
| C2 |
C3 |
N2 |
C6 |
177.2 |
180.0 |
| C7 |
C6 |
H6 |
N2 |
231.2 |
240.0 |
| C7 |
C6 |
H6 |
H6A |
115.6 |
120.0 |
| N2 |
C6 |
H6 |
H6A |
244.4 |
240.0 |
| H6 |
C6 |
N2 |
C3 |
330.1 |
319.2 |
| C7 |
C6 |
H6A |
N2 |
128.8 |
120.0 |
| C7 |
C6 |
H6A |
H6 |
244.4 |
240.0 |
| N2 |
C6 |
H6A |
H6 |
115.6 |
120.0 |
| H6A |
C6 |
N2 |
C3 |
210.1 |
199.2 |
| H7 |
C7 |
N3 |
HN3 |
13.3 |
120.1 |
| N3 |
C7 |
H7 |
C6 |
239.4 |
240.0 |
| N3 |
C7 |
H7 |
H7A |
119.7 |
120.0 |
| H7 |
C7 |
C6 |
N2 |
68.3 |
60.0 |
| H7 |
C7 |
C6 |
H6 |
188.3 |
180.0 |
| H7 |
C7 |
C6 |
H6A |
308.3 |
300.0 |
| H7A |
C7 |
N3 |
HN3 |
133.3 |
240.1 |
| N3 |
C7 |
H7A |
C6 |
120.6 |
120.0 |
| N3 |
C7 |
H7A |
H7 |
240.3 |
240.0 |
| H7A |
C7 |
C6 |
N2 |
308.3 |
300.0 |
| H7A |
C7 |
C6 |
H6 |
68.3 |
60.0 |
| H7A |
C7 |
C6 |
H6A |
188.4 |
180.0 |
| O |
C8 |
N3 |
HN3 |
178.4 |
180.0 |
| C9 |
C8 |
N3 |
HN3 |
358.3 |
360.0 |
| C15 |
C10 |
C11 |
N4 |
180.0 |
179.6 |
| C11 |
C10 |
N4 |
C1 |
49.0 |
33.2 |
| C11 |
C10 |
N4 |
HN4 |
229.0 |
213.2 |
| C11 |
C10 |
C15 |
N4 |
180.0 |
180.4 |
| C15 |
C10 |
N4 |
C1 |
229.0 |
213.6 |
| C15 |
C10 |
N4 |
HN4 |
49.0 |
33.6 |
| N1 |
C1 |
N4 |
C10 |
6.2 |
6.3 |
| C1 |
N4 |
C10 |
HN4 |
180.0 |
180.0 |
| C10 |
N4 |
C1 |
C3 |
186.8 |
186.3 |
| C12 |
C13 |
O1 |
C14 |
179.0 |
180.4 |
| O1 |
C13 |
C12 |
C11 |
179.5 |
180.0 |
| O1 |
C13 |
C14 |
C15 |
181.1 |
180.0 |
| O1 |
C13 |
C14 |
H14 |
1.1 |
0.4 |
| O1 |
C13 |
C12 |
C14 |
180.9 |
179.6 |
| C12 |
C13 |
C14 |
C15 |
2.1 |
359.6 |
| C12 |
C13 |
C14 |
H14 |
182.1 |
180.0 |
| CL |
C12 |
C13 |
C11 |
181.0 |
179.6 |
| C13 |
C12 |
C11 |
H11 |
180.5 |
180.0 |
| O1 |
C13 |
C14 |
C12 |
179.1 |
180.4 |
| C14 |
C13 |
C12 |
C11 |
358.6 |
0.4 |
| C13 |
C14 |
C15 |
H15 |
178.0 |
180.1 |
| C14 |
C15 |
C10 |
N4 |
181.1 |
180.0 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.4 |
| H15 |
C15 |
C10 |
N4 |
1.1 |
359.9 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.3 |
| C18 |
C17 |
C16 |
C21 |
358.7 |
359.8 |
| C18 |
C17 |
C16 |
O1 |
180.3 |
179.7 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
179.7 |
| C17 |
C16 |
C21 |
H21 |
181.7 |
180.5 |
| C18 |
C17 |
H17 |
C16 |
180.0 |
180.3 |
| H17 |
C17 |
C16 |
C21 |
178.7 |
180.0 |
| H17 |
C17 |
C16 |
O1 |
0.3 |
360.0 |
| C19 |
C20 |
C21 |
H21 |
178.4 |
180.0 |
| C22 |
C20 |
C21 |
H21 |
359.1 |
359.9 |
| F |
C22 |
C20 |
F1 |
240.4 |
240.0 |
| F2 |
C22 |
C20 |
F1 |
121.2 |
120.0 |
| C17 |
C16 |
C21 |
C20 |
1.7 |
360.0 |
| C21 |
C20 |
C22 |
F2 |
11.0 |
90.0 |
| C21 |
C20 |
C22 |
F1 |
249.8 |
330.0 |
| C16 |
C21 |
C20 |
H21 |
180.0 |
180.5 |
| C21 |
C16 |
C17 |
H17 |
178.7 |
180.0 |
| C17 |
C16 |
C21 |
O1 |
181.6 |
179.9 |
| C20 |
C21 |
C16 |
H21 |
180.0 |
179.5 |
| H21 |
C21 |
C20 |
C22 |
359.1 |
359.9 |
| C20 |
C22 |
F |
F1 |
120.0 |
120.1 |
| F2 |
C22 |
F |
F1 |
243.2 |
240.0 |
| C20 |
C22 |
F2 |
F1 |
238.1 |
239.9 |
| F |
C22 |
F2 |
F1 |
117.3 |
120.0 |
| C20 |
C22 |
F1 |
F2 |
124.3 |
120.0 |
| H24 |
C24 |
C23 |
H24A |
240.0 |
240.0 |
| H24 |
C24 |
C23 |
H24B |
120.0 |
120.0 |
| H24A |
C24 |
C23 |
H24B |
240.0 |
240.0 |
| C23 |
C24 |
H24 |
H24A |
120.0 |
120.0 |
| C23 |
C24 |
H24 |
H24B |
240.0 |
240.0 |
| H24A |
C24 |
H24 |
H24B |
120.0 |
120.0 |
| C23 |
C24 |
H24A |
H24 |
240.0 |
240.0 |
| C23 |
C24 |
H24A |
H24B |
120.0 |
120.0 |
| H24 |
C24 |
H24A |
H24B |
240.0 |
239.9 |
| C23 |
C24 |
H24B |
H24 |
120.0 |
120.0 |
| C23 |
C24 |
H24B |
H24A |
240.0 |
240.0 |
| H24 |
C24 |
H24B |
H24A |
120.0 |
120.1 |
| C19 |
C18 |
C17 |
C16 |
0.8 |
360.0 |
| C19 |
C18 |
C17 |
H17 |
180.8 |
179.7 |
| H18 |
C18 |
C17 |
C16 |
180.8 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
0.8 |
359.7 |
| H18 |
C18 |
C19 |
H19 |
359.3 |
359.8 |
| C16 |
O1 |
C13 |
C12 |
238.3 |
176.9 |
| C16 |
O1 |
C13 |
C14 |
59.2 |
356.5 |
| O1 |
C16 |
C17 |
H17 |
0.3 |
360.0 |
| C17 |
C16 |
O1 |
C21 |
178.4 |
180.1 |
| O1 |
C16 |
C21 |
H21 |
0.1 |
0.6 |
| CL |
C12 |
C13 |
C14 |
179.6 |
180.1 |
| C13 |
C12 |
CL |
C11 |
179.0 |
180.4 |
| CL |
C12 |
C11 |
H11 |
359.5 |
0.3 |
| C12 |
C11 |
C10 |
N4 |
179.6 |
180.1 |
| C11 |
C12 |
C13 |
C14 |
358.6 |
0.4 |
| H11 |
C11 |
C10 |
N4 |
359.7 |
360.0 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
179.6 |
| H14 |
C14 |
C15 |
H15 |
358.0 |
359.7 |
| N4 |
C1 |
N1 |
C |
181.4 |
180.0 |
| N1 |
C1 |
N4 |
C3 |
179.5 |
180.0 |
| C10 |
N4 |
C1 |
HN4 |
180.0 |
180.0 |
| N4 |
C1 |
C3 |
C2 |
177.4 |
180.0 |
| N4 |
C1 |
C3 |
N2 |
1.3 |
360.0 |
| C10 |
N4 |
HN4 |
C1 |
180.0 |
180.0 |
| HN4 |
N4 |
C1 |
C3 |
6.8 |
6.3 |
| C3 |
C1 |
N1 |
C |
0.9 |
360.0 |
| N1 |
C1 |
C3 |
N4 |
180.5 |
180.0 |
| C6 |
N2 |
C3 |
C1 |
353.7 |
359.9 |
| C3 |
C1 |
N4 |
HN4 |
6.8 |
6.3 |
| C2 |
C3 |
C1 |
N2 |
176.1 |
180.0 |
| N1 |
C |
N |
H |
180.0 |
180.0 |
| N1 |
C |
H |
N |
180.0 |
180.0 |
| H |
C |
N |
C2 |
180.3 |
180.0 |
| C3 |
C2 |
C5 |
H5 |
181.5 |
180.0 |
| C6 |
N2 |
C3 |
C2 |
177.2 |
180.0 |
| C1 |
C3 |
C2 |
N2 |
182.9 |
180.0 |
| C |
N |
C2 |
C3 |
358.4 |
360.0 |
| C3 |
N2 |
C4 |
H4 |
177.8 |
180.0 |
| C3 |
N2 |
C6 |
H6 |
330.1 |
319.2 |
| C3 |
N2 |
C6 |
H6A |
210.1 |
199.2 |
| C1 |
C3 |
N2 |
C2 |
176.5 |
180.0 |
| N |
C2 |
C5 |
H5 |
358.9 |
0.0 |
| C2 |
N |
C |
H |
180.3 |
180.0 |
| N |
C2 |
C3 |
N2 |
179.6 |
180.0 |
| C9 |
C23 |
C24 |
H24 |
180.0 |
60.0 |
| C9 |
C23 |
C24 |
H24A |
300.0 |
180.0 |
| C9 |
C23 |
C24 |
H24B |
60.0 |
300.0 |
| H9 |
C9 |
C23 |
H9A |
120.0 |
120.0 |
| C23 |
C9 |
H9 |
H9A |
241.0 |
240.0 |
| C23 |
C9 |
H9A |
H9 |
119.0 |
120.0 |
| C25 |
C23 |
C24 |
H24 |
305.1 |
300.0 |
| C25 |
C23 |
C24 |
H24A |
65.1 |
60.0 |
| C25 |
C23 |
C24 |
H24B |
185.1 |
180.0 |
| C25 |
C23 |
C9 |
H9 |
304.4 |
57.5 |
| C25 |
C23 |
C9 |
H9A |
184.4 |
297.5 |
| C25 |
C23 |
O2 |
HO2 |
297.5 |
180.0 |
| O2 |
C23 |
C24 |
H24 |
62.4 |
180.0 |
| O2 |
C23 |
C24 |
H24A |
182.3 |
300.0 |
| O2 |
C23 |
C24 |
H24B |
302.4 |
60.0 |
| O2 |
C23 |
C9 |
H9 |
183.7 |
177.5 |
| O2 |
C23 |
C9 |
H9A |
63.6 |
57.5 |
| H25A |
C25 |
H25 |
H25B |
120.0 |
120.0 |
| H25 |
C25 |
H25A |
H25B |
240.0 |
240.0 |
| H25 |
C25 |
H25B |
H25A |
120.0 |
120.0 |