PDB Chemical Component 03M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 03M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
C1 |
1.402 |
1.379 |
| C4 |
H4 |
1.080 |
1.080 |
| C6 |
C7 |
1.364 |
1.367 |
| C6 |
N5 |
1.354 |
1.357 |
| C6 |
H6 |
1.079 |
1.080 |
| C7 |
C8 |
1.367 |
1.475 |
| C8 |
C4 |
1.393 |
1.393 |
| C8 |
C9 |
1.381 |
1.404 |
| C10 |
C7 |
1.492 |
1.463 |
| C10 |
H10 |
1.080 |
1.080 |
| N12 |
C11 |
1.364 |
1.403 |
| C13 |
N12 |
1.367 |
1.346 |
| C15 |
O17 |
1.306 |
1.218 |
| C15 |
C11 |
1.470 |
1.421 |
| C20 |
C21 |
1.389 |
1.382 |
| C20 |
H20 |
1.080 |
1.080 |
| C21 |
H21 |
1.080 |
1.080 |
| C22 |
C21 |
1.392 |
1.384 |
| C22 |
F26 |
1.328 |
1.350 |
| C24 |
C19 |
1.392 |
1.383 |
| C24 |
C23 |
1.381 |
1.384 |
| C24 |
H24 |
1.080 |
1.080 |
| C1 |
C2 |
1.383 |
1.388 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
CL |
1.742 |
1.736 |
| C3 |
C2 |
1.386 |
1.379 |
| C3 |
C27 |
1.523 |
1.507 |
| N5 |
C9 |
1.352 |
1.380 |
| N5 |
HN5 |
1.000 |
0.970 |
| C9 |
C3 |
1.359 |
1.391 |
| C11 |
C10 |
1.464 |
1.361 |
| N14 |
C13 |
1.362 |
1.344 |
| N14 |
C15 |
1.338 |
1.347 |
| O16 |
C13 |
1.303 |
1.216 |
| C18 |
N14 |
1.454 |
1.465 |
| C18 |
C19 |
1.509 |
1.506 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C19 |
C20 |
1.396 |
1.382 |
| C23 |
C22 |
1.400 |
1.387 |
| F25 |
C23 |
1.327 |
1.351 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.099 |
1.090 |
| C27 |
H27B |
1.100 |
1.090 |
| N12 |
H14 |
1.000 |
0.970 |
Bond Angles for 03M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C4 |
H4 |
121.4 |
120.2 |
| C8 |
C4 |
C1 |
117.2 |
119.6 |
| C4 |
C1 |
C2 |
117.2 |
120.3 |
| C4 |
C1 |
H1 |
121.4 |
119.8 |
| C8 |
C4 |
H4 |
121.4 |
120.2 |
| C7 |
C6 |
N5 |
103.3 |
109.6 |
| C7 |
C6 |
H6 |
128.4 |
125.2 |
| C6 |
C7 |
C8 |
113.1 |
106.4 |
| N5 |
C6 |
H6 |
128.4 |
125.2 |
| C6 |
N5 |
C9 |
111.2 |
110.5 |
| C6 |
N5 |
HN5 |
124.4 |
124.8 |
| C7 |
C8 |
C9 |
103.6 |
106.0 |
| C8 |
C9 |
N5 |
108.4 |
107.5 |
| C8 |
C9 |
C3 |
118.3 |
119.4 |
| C11 |
C10 |
H10 |
114.8 |
120.0 |
| C13 |
N12 |
C11 |
102.3 |
107.5 |
| N12 |
C11 |
C15 |
108.0 |
105.9 |
| C11 |
N12 |
H14 |
128.9 |
126.2 |
| C13 |
N12 |
H14 |
128.8 |
126.3 |
| C11 |
C15 |
O17 |
124.3 |
126.5 |
| N14 |
C15 |
O17 |
126.3 |
126.4 |
| C21 |
C20 |
H20 |
119.6 |
120.0 |
| C20 |
C21 |
H21 |
120.9 |
120.0 |
| C19 |
C20 |
H20 |
119.6 |
119.9 |
| C22 |
C21 |
H21 |
120.9 |
120.0 |
| C23 |
C22 |
F26 |
119.8 |
120.1 |
| C19 |
C24 |
C23 |
118.3 |
120.0 |
| C19 |
C24 |
H24 |
120.8 |
120.0 |
| C24 |
C19 |
C18 |
116.0 |
119.9 |
| C23 |
C24 |
H24 |
120.8 |
120.0 |
| C2 |
C1 |
H1 |
121.4 |
119.9 |
| C1 |
C2 |
CL |
115.3 |
119.7 |
| C3 |
C2 |
CL |
120.1 |
119.7 |
| C9 |
C3 |
C27 |
119.1 |
120.0 |
| C3 |
C27 |
H27 |
109.5 |
109.4 |
| C3 |
C27 |
H27A |
109.5 |
109.5 |
| C3 |
C27 |
H27B |
109.4 |
109.5 |
| C9 |
N5 |
HN5 |
124.4 |
124.7 |
| C19 |
C18 |
H18 |
108.6 |
109.6 |
| C19 |
C18 |
H18A |
108.7 |
109.5 |
| H18 |
C18 |
H18A |
110.3 |
109.4 |
| H27 |
C27 |
H27A |
109.5 |
109.5 |
| H27 |
C27 |
H27B |
109.4 |
109.5 |
| H27A |
C27 |
H27B |
109.5 |
109.5 |
Torsion Angles for 03M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C4 |
C1 |
H4 |
180.0 |
179.8 |
| C2 |
C1 |
C4 |
H1 |
180.0 |
180.1 |
| C4 |
C1 |
C2 |
CL |
180.9 |
180.0 |
| C8 |
C4 |
H4 |
C1 |
180.0 |
180.2 |
| H4 |
C4 |
C1 |
C2 |
178.8 |
180.0 |
| H4 |
C4 |
C1 |
H1 |
358.8 |
359.9 |
| N5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| C7 |
C6 |
N5 |
C9 |
354.1 |
0.0 |
| C7 |
C6 |
N5 |
HN5 |
174.1 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
354.6 |
360.0 |
| C7 |
C6 |
N5 |
H6 |
180.0 |
180.0 |
| N5 |
C6 |
C7 |
C8 |
7.1 |
360.0 |
| C8 |
C9 |
N5 |
C6 |
2.9 |
359.9 |
| C9 |
N5 |
C6 |
HN5 |
180.0 |
180.1 |
| C7 |
C6 |
H6 |
N5 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
C8 |
187.1 |
180.0 |
| H6 |
C6 |
N5 |
C9 |
174.1 |
180.0 |
| H6 |
C6 |
N5 |
HN5 |
354.1 |
360.0 |
| C7 |
C8 |
C4 |
C1 |
175.2 |
180.0 |
| C7 |
C8 |
C4 |
H4 |
355.2 |
359.7 |
| C8 |
C7 |
C6 |
N5 |
7.1 |
360.0 |
| C8 |
C7 |
C6 |
H6 |
187.1 |
180.0 |
| C7 |
C8 |
C9 |
N5 |
1.5 |
0.0 |
| C7 |
C8 |
C9 |
C3 |
185.6 |
180.5 |
| C1 |
C4 |
C8 |
H4 |
180.0 |
180.2 |
| C8 |
C4 |
C1 |
C2 |
358.9 |
359.8 |
| C8 |
C4 |
C1 |
H1 |
178.9 |
179.7 |
| C9 |
C8 |
C4 |
C1 |
360.0 |
360.0 |
| C9 |
C8 |
C4 |
H4 |
180.0 |
179.8 |
| C6 |
N5 |
C9 |
C8 |
2.9 |
359.9 |
| C8 |
C9 |
C3 |
C27 |
180.4 |
179.8 |
| C8 |
C9 |
N5 |
HN5 |
182.9 |
180.0 |
| C10 |
C7 |
C6 |
N5 |
172.3 |
179.9 |
| C10 |
C7 |
C6 |
H6 |
352.2 |
359.9 |
| C10 |
C7 |
C8 |
C9 |
187.8 |
180.1 |
| N12 |
C11 |
C10 |
H10 |
185.2 |
187.4 |
| C13 |
N12 |
C11 |
H14 |
180.0 |
179.7 |
| N12 |
C11 |
C15 |
O17 |
178.3 |
180.0 |
| C13 |
N12 |
C11 |
C15 |
359.0 |
359.7 |
| C11 |
N12 |
C13 |
H14 |
180.0 |
180.3 |
| C15 |
C11 |
C10 |
H10 |
5.4 |
7.3 |
| C15 |
C11 |
N12 |
H14 |
179.0 |
180.1 |
| N14 |
C15 |
C11 |
O17 |
182.5 |
180.4 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
180.2 |
| C22 |
C21 |
C20 |
H21 |
180.0 |
179.9 |
| H20 |
C20 |
C21 |
H21 |
0.2 |
0.1 |
| H21 |
C21 |
C20 |
H20 |
0.2 |
0.1 |
| C22 |
C21 |
C20 |
H20 |
180.2 |
180.0 |
| C20 |
C21 |
C22 |
H21 |
180.0 |
180.1 |
| F26 |
C22 |
C21 |
H21 |
2.0 |
359.9 |
| C24 |
C19 |
C20 |
H20 |
180.6 |
180.2 |
| C23 |
C24 |
C19 |
H24 |
180.0 |
180.0 |
| C24 |
C19 |
C18 |
H18 |
135.7 |
330.0 |
| C24 |
C19 |
C18 |
H18A |
15.7 |
210.0 |
| C24 |
C23 |
C22 |
F26 |
177.5 |
179.5 |
| C19 |
C24 |
C23 |
H24 |
180.0 |
180.0 |
| C23 |
C24 |
C19 |
C18 |
179.0 |
180.0 |
| C19 |
C24 |
H24 |
C23 |
180.0 |
180.0 |
| H24 |
C24 |
C19 |
C18 |
359.0 |
360.0 |
| C2 |
C1 |
C4 |
H4 |
178.8 |
180.0 |
| C4 |
C1 |
C2 |
H1 |
180.0 |
179.9 |
| C3 |
C2 |
C1 |
CL |
179.6 |
180.0 |
| H1 |
C1 |
C4 |
H4 |
358.8 |
359.9 |
| C4 |
C1 |
H1 |
C2 |
180.0 |
180.1 |
| H1 |
C1 |
C2 |
CL |
0.9 |
0.0 |
| CL |
C2 |
C1 |
H1 |
0.9 |
0.0 |
| C8 |
C9 |
C3 |
C2 |
357.5 |
359.2 |
| C3 |
C2 |
C1 |
H1 |
180.5 |
180.0 |
| C1 |
C2 |
C3 |
CL |
180.4 |
180.0 |
| C27 |
C3 |
C2 |
CL |
358.0 |
360.0 |
| H27 |
C27 |
C3 |
H27A |
240.0 |
240.0 |
| H27 |
C27 |
C3 |
H27B |
120.0 |
120.0 |
| H27A |
C27 |
C3 |
H27B |
240.0 |
240.0 |
| C9 |
N5 |
C6 |
H6 |
174.1 |
180.0 |
| C6 |
N5 |
C9 |
HN5 |
180.0 |
179.9 |
| C8 |
C9 |
N5 |
C3 |
184.9 |
180.6 |
| N5 |
C9 |
C3 |
C27 |
5.7 |
0.4 |
| HN5 |
N5 |
C6 |
H6 |
354.1 |
360.0 |
| C6 |
N5 |
HN5 |
C9 |
180.0 |
180.1 |
| C6 |
N5 |
C9 |
C3 |
178.0 |
179.4 |
| C8 |
C9 |
C3 |
N5 |
174.7 |
179.4 |
| C9 |
C3 |
C2 |
CL |
181.0 |
180.6 |
| C9 |
C3 |
C27 |
H27 |
268.6 |
269.4 |
| C9 |
C3 |
C27 |
H27A |
28.6 |
29.4 |
| C9 |
C3 |
C27 |
H27B |
148.6 |
149.4 |
| N14 |
C13 |
N12 |
H14 |
180.9 |
179.7 |
| C11 |
C15 |
N14 |
O17 |
177.4 |
179.6 |
| O16 |
C13 |
N12 |
H14 |
358.6 |
359.6 |
| C24 |
C19 |
C18 |
N14 |
255.7 |
90.0 |
| C18 |
C19 |
C20 |
H20 |
0.4 |
359.8 |
| C18 |
C19 |
C24 |
C23 |
179.0 |
180.0 |
| C18 |
C19 |
C24 |
H24 |
359.0 |
360.0 |
| H18 |
C18 |
C19 |
H18A |
120.0 |
120.0 |
| C19 |
C18 |
H18 |
H18A |
241.0 |
240.0 |
| C19 |
C18 |
H18A |
H18 |
119.0 |
120.1 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
179.8 |
| C19 |
C20 |
C21 |
H21 |
180.2 |
180.3 |
| C23 |
C22 |
C21 |
H21 |
179.6 |
180.0 |
| F25 |
C23 |
C22 |
F26 |
358.4 |
0.3 |
| F25 |
C23 |
C24 |
H24 |
360.0 |
360.0 |
| C3 |
C27 |
H27 |
H27A |
120.0 |
120.0 |
| C3 |
C27 |
H27 |
H27B |
240.0 |
240.0 |
| H27A |
C27 |
H27 |
H27B |
120.0 |
120.0 |
| C3 |
C27 |
H27A |
H27 |
239.9 |
240.0 |
| C3 |
C27 |
H27A |
H27B |
120.0 |
120.0 |
| H27 |
C27 |
H27A |
H27B |
240.0 |
240.0 |
| C3 |
C27 |
H27B |
H27 |
120.0 |
120.0 |
| C3 |
C27 |
H27B |
H27A |
240.0 |
240.0 |
| H27 |
C27 |
H27B |
H27A |
120.0 |
120.0 |
| C13 |
N12 |
H14 |
C11 |
180.0 |
180.4 |
| H14 |
N12 |
C11 |
C15 |
179.0 |
180.1 |