PDB Chemical Component 034
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 034
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2 |
C1 |
1.527 |
1.529 |
C1 |
H1 |
1.100 |
1.090 |
C1 |
H1A |
1.099 |
1.090 |
C1 |
H1B |
1.100 |
1.090 |
C4 |
C2 |
1.473 |
1.507 |
C2 |
C3 |
1.519 |
1.530 |
C2 |
H2 |
1.100 |
1.090 |
C3 |
H3 |
1.101 |
1.090 |
C3 |
H3A |
1.100 |
1.090 |
C3 |
H3B |
1.100 |
1.090 |
C30 |
CL3 |
1.779 |
1.736 |
O5 |
C4 |
1.348 |
1.341 |
C4 |
C8 |
1.470 |
1.352 |
N6 |
O5 |
1.339 |
1.209 |
N6 |
C7 |
1.353 |
1.310 |
C35 |
CL6 |
1.791 |
1.735 |
C29 |
C7 |
1.483 |
1.483 |
C7 |
C8 |
1.483 |
1.423 |
C8 |
C9 |
1.494 |
1.507 |
O10 |
C9 |
1.419 |
1.429 |
C9 |
H9 |
1.100 |
1.091 |
C9 |
H9A |
1.101 |
1.090 |
O10 |
C11 |
1.361 |
1.359 |
C11 |
C16 |
1.385 |
1.388 |
C11 |
C12 |
1.385 |
1.388 |
C12 |
C13 |
1.392 |
1.379 |
C12 |
H12 |
1.081 |
1.080 |
C13 |
C14 |
1.393 |
1.394 |
C13 |
H13 |
1.080 |
1.080 |
C15 |
C14 |
1.394 |
1.393 |
C14 |
C17 |
1.496 |
1.484 |
C16 |
C15 |
1.390 |
1.380 |
C15 |
H15 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
C17 |
C25 |
1.402 |
1.386 |
C17 |
C18 |
1.407 |
1.400 |
C18 |
C19 |
1.392 |
1.364 |
C18 |
H18 |
1.080 |
1.080 |
C19 |
C20 |
1.388 |
1.393 |
C19 |
H19 |
1.080 |
1.080 |
C24 |
C20 |
1.377 |
1.409 |
C20 |
N21 |
1.349 |
1.375 |
C22 |
N21 |
1.352 |
1.382 |
C23 |
C22 |
1.385 |
1.359 |
C22 |
C26 |
1.488 |
1.469 |
C24 |
C23 |
1.414 |
1.416 |
C23 |
H23 |
1.080 |
1.080 |
C25 |
C24 |
1.393 |
1.400 |
C25 |
H25 |
1.080 |
1.080 |
O27 |
C26 |
1.338 |
1.216 |
C26 |
O28 |
1.230 |
1.348 |
O28 |
HO28 |
0.950 |
0.967 |
C30 |
C29 |
1.371 |
1.395 |
C35 |
C29 |
1.378 |
1.395 |
C32 |
C30 |
1.387 |
1.381 |
C33 |
C32 |
1.392 |
1.383 |
C32 |
H32 |
1.080 |
1.080 |
C33 |
C34 |
1.393 |
1.383 |
C33 |
H33 |
1.080 |
1.080 |
C34 |
C35 |
1.389 |
1.382 |
C34 |
H34 |
1.080 |
1.080 |
N21 |
HN21 |
1.000 |
0.970 |
Bond Angles for 034
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
H1 |
109.5 |
109.5 |
C2 |
C1 |
H1A |
109.5 |
109.5 |
C2 |
C1 |
H1B |
109.4 |
109.5 |
H1 |
C1 |
H1A |
109.5 |
109.4 |
H1 |
C1 |
H1B |
109.5 |
109.5 |
H1A |
C1 |
H1B |
109.5 |
109.5 |
C4 |
C2 |
H2 |
110.6 |
109.5 |
C3 |
C2 |
H2 |
107.9 |
109.5 |
C2 |
C3 |
H3 |
109.5 |
109.5 |
C2 |
C3 |
H3A |
109.5 |
109.5 |
C2 |
C3 |
H3B |
109.5 |
109.5 |
H3 |
C3 |
H3A |
109.5 |
109.4 |
H3 |
C3 |
H3B |
109.5 |
109.5 |
H3A |
C3 |
H3B |
109.5 |
109.4 |
O5 |
C4 |
C8 |
105.5 |
106.6 |
C4 |
C8 |
C7 |
103.5 |
104.0 |
C4 |
C8 |
C9 |
131.5 |
128.0 |
N6 |
C7 |
C8 |
108.3 |
106.1 |
C7 |
C8 |
C9 |
125.0 |
128.0 |
C8 |
C9 |
H9 |
111.1 |
109.5 |
C8 |
C9 |
H9A |
111.1 |
109.5 |
O10 |
C9 |
H9 |
111.1 |
109.4 |
O10 |
C9 |
H9A |
111.1 |
109.5 |
H9 |
C9 |
H9A |
107.8 |
109.5 |
O10 |
C11 |
C16 |
120.1 |
119.9 |
O10 |
C11 |
C12 |
120.3 |
120.0 |
C12 |
C11 |
C16 |
119.7 |
120.2 |
C11 |
C16 |
C15 |
120.2 |
120.0 |
C11 |
C16 |
H16 |
119.9 |
120.0 |
C11 |
C12 |
C13 |
120.2 |
120.1 |
C11 |
C12 |
H12 |
119.9 |
120.0 |
C13 |
C12 |
H12 |
119.9 |
119.9 |
C12 |
C13 |
C14 |
120.6 |
119.9 |
C12 |
C13 |
H13 |
119.7 |
120.1 |
C14 |
C13 |
H13 |
119.7 |
120.1 |
C13 |
C14 |
C17 |
120.3 |
120.0 |
C15 |
C14 |
C17 |
120.9 |
120.1 |
C14 |
C17 |
C25 |
121.7 |
119.9 |
C14 |
C17 |
C18 |
119.2 |
120.0 |
C16 |
C15 |
H15 |
119.7 |
120.0 |
C18 |
C17 |
C25 |
119.1 |
120.2 |
C17 |
C25 |
C24 |
119.2 |
119.5 |
C17 |
C25 |
H25 |
120.4 |
120.3 |
C17 |
C18 |
C19 |
120.7 |
120.7 |
C17 |
C18 |
H18 |
119.7 |
119.7 |
C19 |
C18 |
H18 |
119.7 |
119.6 |
C18 |
C19 |
C20 |
119.6 |
120.2 |
C18 |
C19 |
H19 |
120.2 |
119.9 |
C20 |
C19 |
H19 |
120.2 |
119.9 |
C19 |
C20 |
N21 |
133.3 |
132.9 |
C20 |
N21 |
HN21 |
124.6 |
125.6 |
C22 |
N21 |
HN21 |
124.6 |
125.6 |
C23 |
C22 |
C26 |
127.2 |
125.4 |
C22 |
C26 |
O28 |
119.4 |
120.0 |
C24 |
C23 |
H23 |
127.4 |
126.1 |
O27 |
C26 |
O28 |
121.0 |
120.0 |
C26 |
O28 |
HO28 |
109.5 |
117.0 |
C33 |
C32 |
H32 |
120.4 |
119.9 |
C34 |
C33 |
H33 |
120.1 |
119.8 |
C33 |
C34 |
C35 |
119.9 |
120.1 |
C33 |
C34 |
H34 |
120.0 |
119.9 |
C35 |
C34 |
H34 |
120.1 |
119.9 |
Torsion Angles for 034
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
H1 |
C1 |
H1B |
H1A |
120.0 |
119.9 |
C4 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
C4 |
C2 |
C1 |
H1A |
300.0 |
300.0 |
C4 |
C2 |
C1 |
H1B |
60.0 |
60.0 |
C3 |
C2 |
C4 |
H2 |
241.6 |
240.0 |
C4 |
C2 |
C3 |
H3 |
57.6 |
300.0 |
C4 |
C2 |
C3 |
H3A |
177.6 |
60.0 |
C4 |
C2 |
C3 |
H3B |
297.6 |
180.0 |
C3 |
C2 |
C1 |
H1 |
58.3 |
60.0 |
C3 |
C2 |
C1 |
H1A |
178.3 |
180.0 |
C3 |
C2 |
C1 |
H1B |
298.3 |
300.0 |
C4 |
C2 |
C3 |
H2 |
120.1 |
120.0 |
H3 |
C3 |
C2 |
H3A |
240.0 |
240.0 |
H3 |
C3 |
C2 |
H3B |
120.0 |
120.0 |
H3A |
C3 |
C2 |
H3B |
240.0 |
240.0 |
H2 |
C2 |
C1 |
H1 |
300.0 |
300.0 |
H2 |
C2 |
C1 |
H1A |
60.1 |
60.0 |
H2 |
C2 |
C1 |
H1B |
180.1 |
180.0 |
H2 |
C2 |
C3 |
H3 |
297.4 |
180.0 |
H2 |
C2 |
C3 |
H3A |
57.5 |
300.0 |
H2 |
C2 |
C3 |
H3B |
177.4 |
60.0 |
H3 |
C3 |
C2 |
H2 |
297.4 |
180.0 |
C2 |
C3 |
H3 |
H3A |
120.0 |
120.0 |
C2 |
C3 |
H3 |
H3B |
240.0 |
240.0 |
H3A |
C3 |
H3 |
H3B |
120.0 |
119.9 |
H3A |
C3 |
C2 |
H2 |
57.5 |
300.0 |
C2 |
C3 |
H3A |
H3 |
240.0 |
240.0 |
C2 |
C3 |
H3A |
H3B |
120.0 |
120.0 |
H3 |
C3 |
H3A |
H3B |
240.0 |
240.1 |
H3B |
C3 |
C2 |
H2 |
177.4 |
60.0 |
C2 |
C3 |
H3B |
H3 |
120.0 |
120.0 |
C2 |
C3 |
H3B |
H3A |
240.0 |
240.0 |
H3 |
C3 |
H3B |
H3A |
120.0 |
119.9 |
O5 |
C4 |
C2 |
H2 |
9.9 |
180.3 |
O5 |
C4 |
C8 |
C7 |
0.1 |
359.7 |
O5 |
C4 |
C8 |
C9 |
179.9 |
179.7 |
C8 |
C4 |
C2 |
H2 |
190.4 |
0.0 |
N6 |
C7 |
C8 |
C4 |
359.9 |
0.3 |
C7 |
C8 |
C4 |
C9 |
180.2 |
180.0 |
C4 |
C8 |
C9 |
H9 |
339.6 |
204.0 |
C4 |
C8 |
C9 |
H9A |
99.5 |
324.1 |
N6 |
O5 |
C4 |
C8 |
359.8 |
0.2 |
C4 |
C8 |
C7 |
N6 |
359.9 |
0.3 |
N6 |
C7 |
C8 |
C9 |
180.1 |
180.3 |
C4 |
C8 |
C7 |
C9 |
179.8 |
180.0 |
C7 |
C8 |
C9 |
H9 |
159.3 |
24.1 |
C7 |
C8 |
C9 |
H9A |
279.3 |
144.1 |
C4 |
C8 |
C9 |
C7 |
180.2 |
180.0 |
O10 |
C9 |
C8 |
H9 |
240.0 |
240.1 |
O10 |
C9 |
C8 |
H9A |
120.0 |
120.0 |
H9 |
C9 |
C8 |
H9A |
240.0 |
239.9 |
C8 |
C9 |
O10 |
H9 |
120.0 |
120.0 |
C8 |
C9 |
O10 |
H9A |
240.0 |
240.0 |
H9 |
C9 |
O10 |
H9A |
120.0 |
120.0 |
C8 |
C9 |
H9 |
H9A |
121.9 |
120.0 |
O10 |
C9 |
H9 |
H9A |
238.0 |
240.0 |
C8 |
C9 |
H9A |
H9 |
238.1 |
240.0 |
O10 |
C9 |
H9A |
H9 |
122.0 |
120.0 |
C11 |
O10 |
C9 |
H9 |
56.2 |
60.0 |
C11 |
O10 |
C9 |
H9A |
296.2 |
300.0 |
C12 |
C11 |
O10 |
C16 |
179.9 |
180.3 |
O10 |
C11 |
C16 |
C15 |
179.8 |
179.7 |
O10 |
C11 |
C16 |
H16 |
359.8 |
0.1 |
O10 |
C11 |
C12 |
C13 |
180.0 |
180.0 |
O10 |
C11 |
C12 |
H12 |
0.0 |
359.9 |
O10 |
C11 |
C16 |
C12 |
179.9 |
180.3 |
C16 |
C11 |
C12 |
C13 |
359.9 |
0.3 |
C16 |
C11 |
C12 |
H12 |
179.9 |
180.2 |
C11 |
C16 |
C15 |
H15 |
179.7 |
180.3 |
O10 |
C11 |
C12 |
C16 |
180.1 |
179.7 |
C12 |
C11 |
C16 |
C15 |
359.9 |
359.4 |
C12 |
C11 |
C16 |
H16 |
179.9 |
179.8 |
C13 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
C11 |
C12 |
C13 |
C14 |
0.7 |
0.0 |
C11 |
C12 |
C13 |
H13 |
180.6 |
179.9 |
C13 |
C12 |
C11 |
C16 |
359.9 |
0.3 |
C11 |
C12 |
C13 |
H12 |
180.0 |
179.9 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.1 |
C12 |
C13 |
C14 |
C17 |
181.0 |
180.0 |
H12 |
C12 |
C11 |
C16 |
179.9 |
180.2 |
C11 |
C12 |
H12 |
C13 |
180.0 |
180.1 |
H12 |
C12 |
C13 |
C14 |
180.6 |
180.1 |
H12 |
C12 |
C13 |
H13 |
0.6 |
360.0 |
C14 |
C13 |
C12 |
H12 |
180.6 |
180.1 |
C12 |
C13 |
C14 |
H13 |
180.0 |
179.9 |
C15 |
C14 |
C13 |
C17 |
178.0 |
180.0 |
C13 |
C14 |
C17 |
C25 |
328.0 |
179.9 |
C13 |
C14 |
C17 |
C18 |
146.3 |
0.2 |
H13 |
C13 |
C12 |
H12 |
0.6 |
360.0 |
C12 |
C13 |
H13 |
C14 |
180.0 |
180.1 |
H13 |
C13 |
C14 |
C17 |
1.0 |
0.1 |
C11 |
C16 |
C15 |
C14 |
359.7 |
0.5 |
C15 |
C14 |
C13 |
H13 |
179.0 |
180.0 |
C13 |
C14 |
C15 |
C17 |
182.0 |
180.0 |
C15 |
C14 |
C17 |
C25 |
150.0 |
360.0 |
C15 |
C14 |
C17 |
C18 |
328.4 |
180.3 |
C17 |
C14 |
C13 |
H13 |
1.0 |
0.1 |
C18 |
C17 |
C14 |
C25 |
178.3 |
180.3 |
C14 |
C17 |
C25 |
C24 |
179.3 |
179.7 |
C14 |
C17 |
C25 |
H25 |
359.3 |
0.0 |
C14 |
C17 |
C18 |
C19 |
180.6 |
180.0 |
C14 |
C17 |
C18 |
H18 |
0.7 |
0.0 |
C11 |
C16 |
C15 |
H16 |
180.0 |
180.3 |
C16 |
C15 |
C14 |
C17 |
178.8 |
179.8 |
H15 |
C15 |
C14 |
C17 |
358.8 |
360.0 |
C11 |
C16 |
H16 |
C15 |
180.0 |
179.7 |
H16 |
C16 |
C15 |
H15 |
359.7 |
359.9 |
C14 |
C17 |
C25 |
C18 |
178.3 |
180.3 |
C25 |
C17 |
C18 |
C19 |
359.0 |
0.3 |
C25 |
C17 |
C18 |
H18 |
179.0 |
180.3 |
C14 |
C17 |
C18 |
C25 |
181.6 |
179.7 |
C18 |
C17 |
C25 |
C24 |
1.0 |
359.4 |
C18 |
C17 |
C25 |
H25 |
181.0 |
179.7 |
C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
C20 |
0.5 |
0.0 |
C17 |
C18 |
C19 |
H19 |
180.5 |
179.9 |
C19 |
C18 |
C17 |
C25 |
359.0 |
0.3 |
C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
C20 |
C19 |
C18 |
H19 |
180.0 |
180.1 |
C18 |
C19 |
C20 |
N21 |
179.9 |
180.0 |
H18 |
C18 |
C17 |
C25 |
179.0 |
180.3 |
C17 |
C18 |
H18 |
C19 |
180.0 |
180.0 |
H18 |
C18 |
C19 |
C20 |
180.5 |
180.0 |
H18 |
C18 |
C19 |
H19 |
0.5 |
359.9 |
C20 |
C19 |
C18 |
H18 |
180.5 |
180.0 |
C18 |
C19 |
C20 |
H19 |
180.0 |
179.9 |
C19 |
C20 |
N21 |
HN21 |
359.9 |
359.9 |
H19 |
C19 |
C18 |
H18 |
0.5 |
359.9 |
C18 |
C19 |
H19 |
C20 |
180.0 |
180.1 |
H19 |
C19 |
C20 |
N21 |
359.9 |
0.1 |
C17 |
C25 |
C24 |
C20 |
359.4 |
0.6 |
C24 |
C20 |
C19 |
H19 |
179.9 |
180.1 |
C24 |
C20 |
N21 |
HN21 |
179.9 |
180.0 |
N21 |
C20 |
C19 |
H19 |
359.9 |
0.1 |
C22 |
N21 |
C20 |
HN21 |
180.0 |
180.1 |
C20 |
N21 |
C22 |
HN21 |
180.0 |
179.9 |
C23 |
C22 |
N21 |
HN21 |
180.1 |
180.0 |
C23 |
C22 |
C26 |
O28 |
174.3 |
180.0 |
C26 |
C22 |
N21 |
HN21 |
359.6 |
0.0 |
O27 |
C26 |
C22 |
O28 |
180.8 |
180.0 |
C22 |
C26 |
O28 |
HO28 |
180.8 |
180.0 |
C17 |
C25 |
C24 |
C23 |
179.5 |
180.2 |
C24 |
C23 |
C22 |
C26 |
180.5 |
180.0 |
H23 |
C23 |
C22 |
C26 |
0.5 |
360.0 |
C17 |
C25 |
C24 |
H25 |
180.0 |
180.3 |
C25 |
C24 |
C23 |
H23 |
360.0 |
0.3 |
C17 |
C25 |
H25 |
C24 |
180.0 |
179.7 |
C22 |
C26 |
O27 |
O28 |
179.2 |
180.0 |
O27 |
C26 |
O28 |
HO28 |
0.0 |
0.0 |
C34 |
C33 |
C32 |
H32 |
179.8 |
180.0 |
C35 |
C34 |
C33 |
H34 |
180.0 |
179.7 |
H33 |
C33 |
C32 |
H32 |
359.8 |
360.0 |
H33 |
C33 |
C34 |
C35 |
180.1 |
179.7 |
H33 |
C33 |
C34 |
H34 |
0.1 |
0.0 |
C35 |
C34 |
C33 |
H33 |
180.1 |
179.7 |
C33 |
C34 |
C35 |
H34 |
180.0 |
180.3 |
H34 |
C34 |
C33 |
H33 |
0.1 |
0.0 |
C33 |
C34 |
H34 |
C35 |
180.0 |
179.7 |