PDB Chemical Component 031

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 031

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C40 O39 1.424 1.429
C2 O39 1.356 1.359
C40 H40 1.100 1.091
C40 H40A 1.100 1.090
C40 H40B 1.100 1.089
C3 C2 1.385 1.387
C2 C7 1.392 1.387
C4 C3 1.399 1.382
C3 H3 1.080 1.080
C4 C5 1.387 1.383
C4 H4 1.080 1.080
S8 C5 1.752 1.762
C5 C6 1.380 1.383
C6 C7 1.379 1.381
C6 H6 1.080 1.080
C7 H7 1.080 1.080
O10 S8 1.493 1.421
N11 S8 1.620 1.656
S8 O9 1.499 1.420
C12 N11 1.447 1.465
N11 C16 1.461 1.465
C13 C12 1.524 1.530
C12 H12 1.100 1.090
C12 H12A 1.100 1.091
N15 C13 1.466 1.467
C14 C13 1.533 1.544
C13 H13 1.100 1.090
C47 C14 1.526 1.546
C14 H14 1.100 1.090
C14 H14A 1.100 1.091
C45 N15 1.314 1.345
N15 HN15 1.000 0.969
O46 C45 1.217 1.213
C45 C47 1.518 1.515
C47 H47 1.100 1.090
C47 H47A 1.100 1.090
C17 C16 1.512 1.530
C16 H16 1.100 1.090
C16 H16A 1.100 1.091
C17 C19 1.516 1.531
C17 O18 1.408 1.429
C17 H17 1.100 1.090
O18 HO18 0.950 0.968
N20 C19 1.459 1.464
C19 C32 1.529 1.530
C19 H19 1.100 1.090
C21 N20 1.322 1.348
N20 HN20 1.000 0.970
O22 C21 1.233 1.216
O23 C21 1.359 1.346
C25 O23 1.427 1.451
C25 C24 1.526 1.548
C24 C31 1.525 1.547
C24 H24 1.100 1.091
C24 H24A 1.100 1.090
C26 C25 1.536 1.542
C25 H25 1.100 1.091
C26 C27 1.527 1.539
C26 H26 1.100 1.090
C26 H26A 1.100 1.090
C27 C31 1.522 1.553
C27 O28 1.426 1.443
C27 H27 1.100 1.089
O28 C29 1.431 1.443
C30 C29 1.532 1.545
C29 H29 1.100 1.090
C29 H29A 1.100 1.090
C31 C30 1.528 1.543
C30 H30 1.100 1.090
C30 H30A 1.100 1.090
C31 H31 1.100 1.090
C32 C38 1.528 1.507
C32 H32 1.100 1.090
C32 H32A 1.100 1.091
C38 C33 1.388 1.382
C33 C34 1.384 1.382
C33 H33 1.080 1.080
C35 C34 1.382 1.382
C34 H34 1.080 1.080
C36 C35 1.387 1.383
C35 H35 1.080 1.080
C37 C36 1.389 1.382
C36 H36 1.080 1.080
C37 C38 1.390 1.383
C37 H37 1.080 1.080

Bond Angles for 031

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
H40 C40 H40A 109.4 109.4
H40 C40 H40B 109.5 109.5
H40A C40 H40B 109.5 109.5
C3 C2 C7 119.3 119.9
C2 C7 C6 118.1 120.0
C2 C7 H7 121.0 120.0
C4 C3 H3 119.3 120.0
C5 C4 H4 120.1 120.0
C4 C5 C6 117.4 120.1
C5 C6 C7 124.0 120.0
C5 C6 H6 118.0 120.0
C7 C6 H6 118.0 120.0
C6 C7 H7 121.0 120.1
C12 N11 C16 114.8 120.0
N11 C16 H16 109.5 109.5
N11 C16 H16A 109.5 109.5
C13 C12 H12 109.0 109.5
C13 C12 H12A 108.8 109.4
H12 C12 H12A 110.5 109.5
N15 C13 H13 113.0 110.2
C14 C13 H13 111.6 110.2
C47 C14 H14 111.5 111.0
C47 C14 H14A 112.8 111.0
H14 C14 H14A 104.9 110.8
C45 N15 HN15 125.2 124.4
O46 C45 C47 125.0 125.0
C45 C47 H47 111.6 110.5
C45 C47 H47A 112.9 110.5
H47 C47 H47A 104.8 110.5
C17 C16 H16 109.5 109.5
C17 C16 H16A 109.6 109.4
H16 C16 H16A 109.4 109.4
O18 C17 C19 112.0 109.5
C19 C17 H17 106.8 109.5
C17 C19 C32 110.4 109.5
C17 C19 H19 109.8 109.5
O18 C17 H17 103.9 109.5
C17 O18 HO18 109.5 114.0
N20 C19 C32 109.9 109.5
N20 C19 H19 110.3 109.5
C32 C19 H19 108.1 109.5
C19 C32 C38 109.6 109.5
C19 C32 H32 109.4 109.5
C19 C32 H32A 109.4 109.5
C21 N20 HN20 115.7 119.9
C25 C24 C31 107.0 103.0
C25 C24 H24 110.3 110.7
C25 C24 H24A 110.9 110.9
C31 C24 H24 110.3 110.7
C31 C24 H24A 110.9 110.7
C24 C31 C27 106.9 104.1
C24 C31 C30 112.0 108.8
C24 C31 H31 107.9 112.7
H24 C24 H24A 107.5 110.6
C26 C25 H25 115.0 110.6
C27 C26 H26 111.4 110.0
C27 C26 H26A 112.6 110.0
C26 C27 C31 104.5 106.4
C26 C27 O28 111.4 108.7
C26 C27 H27 110.4 111.8
H26 C26 H26A 105.2 110.0
O28 C27 C31 106.1 104.8
C31 C27 H27 115.4 112.0
C27 C31 C30 104.0 104.2
C27 C31 H31 115.5 112.9
O28 C27 H27 108.9 112.7
C27 O28 C29 105.4 105.7
O28 C29 H29 110.9 110.4
O28 C29 H29A 111.7 110.4
C30 C29 H29 110.8 110.4
C30 C29 H29A 111.8 110.4
H29 C29 H29A 106.3 110.3
C31 C30 H30 111.2 110.5
C31 C30 H30A 112.4 110.6
H30 C30 H30A 105.5 110.5
C38 C32 H32 109.4 109.5
C38 C32 H32A 109.4 109.4
C32 C38 C33 119.5 120.0
C32 C38 C37 119.1 119.9
H32 C32 H32A 109.6 109.5
C38 C33 H33 120.0 120.0
C34 C33 H33 120.0 120.0
C33 C34 H34 120.7 120.0
C35 C34 H34 120.6 120.0
C36 C35 H35 119.5 120.0
C37 C36 H36 119.7 120.0
C38 C37 H37 121.0 120.0

Torsion Angles for 031

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H40A C40 H40 H40B 120.0 120.1
H40 C40 H40A H40B 240.0 240.0
H40 C40 H40B H40A 120.0 120.0
C3 C2 C7 C6 4.0 359.5
C3 C2 C7 H7 184.0 179.7
C5 C6 C7 C2 356.6 0.5
C2 C7 C6 H6 176.7 180.3
C6 C7 C2 H7 180.0 179.7
C4 C3 C2 C7 358.1 0.3
H3 C3 C2 C7 178.1 180.2
C5 C4 C3 H3 179.0 180.1
C4 C5 C6 C7 0.5 359.7
C4 C5 C6 H6 180.5 179.9
H4 C4 C3 H3 359.1 0.1
H4 C4 C5 C6 181.7 180.0
S8 C5 C4 H4 2.8 360.0
S8 C5 C6 H6 359.4 360.0
C2 C7 C6 C5 356.6 0.5
C6 C5 C4 H4 181.7 180.0
C7 C6 C5 H6 180.0 179.7
C5 C6 C7 H7 176.6 180.3
C2 C7 C6 H7 180.0 180.3
C5 C6 C7 H6 180.0 180.3
C5 C6 H6 C7 180.0 179.7
H6 C6 C7 H7 356.7 0.0
C2 C7 H7 C6 180.0 179.7
H7 C7 C6 H6 356.7 0.0
C12 N11 C16 H16 20.0 35.0
C12 N11 C16 H16A 139.9 155.0
C17 C16 N11 H16 240.0 240.0
C17 C16 N11 H16A 120.1 119.9
H16 C16 N11 H16A 240.0 240.0
C13 C12 N11 C16 74.3 294.3
H12 C12 C13 H12A 120.6 120.0
H12 C12 N11 C16 194.3 54.3
C13 C12 H12 H12A 240.5 240.0
H12A C12 N11 C16 314.8 174.4
C13 C12 H12A H12 119.7 120.0
N15 C13 C12 H12 43.2 178.5
N15 C13 C12 H12A 282.7 58.5
C14 C13 N15 H13 238.7 241.0
C14 C13 C12 H12 286.8 62.4
C14 C13 C12 H12A 166.3 302.3
N15 C13 C14 H13 122.2 119.0
H13 C13 C12 H12 165.5 300.4
H13 C13 C12 H12A 44.9 180.4
C47 C14 C13 H13 210.9 215.5
H14 C14 C47 H14A 117.8 123.7
H14 C14 C13 H13 330.9 333.7
C47 C14 H14 H14A 237.5 236.2
H14A C14 C13 H13 88.6 97.3
C47 C14 H14A H14 121.6 123.8
C45 N15 C13 H13 149.2 136.1
HN15 N15 C13 H13 329.3 316.1
O46 C45 N15 HN15 342.8 359.6
O46 C45 C47 H47 59.0 45.0
O46 C45 C47 H47A 301.3 282.3
C45 C47 C14 H14 257.4 266.6
C45 C47 C14 H14A 139.6 142.9
C47 C45 N15 HN15 162.9 179.5
H47 C47 C45 H47A 117.7 122.7
H47 C47 C14 H14 17.4 25.3
H47 C47 C14 H14A 259.6 261.6
C45 C47 H47 H47A 237.5 237.4
H47A C47 C14 H14 135.1 148.0
H47A C47 C14 H14A 17.3 24.3
C45 C47 H47A H47 121.7 122.7
N11 C16 C17 H16 120.0 120.1
N11 C16 C17 H16A 240.0 240.0
H16 C16 C17 H16A 120.0 119.9
N11 C16 H16 H16A 120.0 120.0
C17 C16 H16 H16A 239.9 240.1
N11 C16 H16A H16 240.0 239.9
C17 C16 H16A H16 120.0 120.0
C19 C17 C16 H16 172.7 64.9
C19 C17 C16 H16A 52.8 305.0
O18 C17 C19 H17 246.8 240.0
C19 C17 O18 HO18 276.9 300.0
N20 C19 C17 C32 239.6 240.0
N20 C19 C17 H19 120.5 120.0
C32 C19 C17 H19 240.9 240.0
C17 C19 C32 C38 174.7 175.0
C17 C19 C32 H32 294.7 295.0
C17 C19 C32 H32A 54.8 55.0
O18 C17 C16 H16 38.1 304.9
O18 C17 C16 H16A 278.1 185.0
C19 C17 O18 H17 114.9 120.0
O18 C17 C19 C32 57.3 55.0
O18 C17 C19 H19 176.4 175.0
H17 C17 C16 H16 286.7 184.9
H17 C17 C16 H16A 166.7 65.0
O18 C17 H17 C19 118.6 120.0
H17 C17 C19 C32 170.5 175.0
H17 C17 C19 H19 289.6 295.0
H17 C17 O18 HO18 162.0 180.0
HO18 O18 C17 C19 276.9 300.0
HO18 O18 C17 H17 162.0 180.0
N20 C19 C17 H17 50.1 55.0
C17 C19 N20 C32 120.7 120.0
C17 C19 N20 H19 239.8 240.0
C32 C19 N20 H19 119.1 120.0
N20 C19 C32 C38 294.1 294.9
N20 C19 C32 H32 54.1 55.0
N20 C19 C32 H32A 174.2 175.0
C32 C19 C17 H17 170.5 175.0
C17 C19 C32 H19 120.2 120.0
N20 C19 C32 H19 239.5 240.0
C38 C32 C19 H32 240.0 240.0
C38 C32 C19 H32A 119.9 119.9
C19 C32 C38 C33 112.9 269.5
C19 C32 C38 C37 291.4 90.0
H32 C32 C19 H32A 239.9 240.0
H19 C19 C17 H17 289.6 295.0
C17 C19 H19 C32 239.5 240.0
N20 C19 H19 C32 120.2 120.0
H19 C19 C32 C38 54.5 55.0
H19 C19 C32 H32 174.5 175.0
H19 C19 C32 H32A 294.6 295.0
C21 N20 C19 C32 115.5 85.0
C21 N20 C19 H19 356.4 325.0
HN20 N20 C19 C32 295.5 265.0
HN20 N20 C19 H19 176.4 145.0
O22 C21 N20 HN20 194.2 180.0
O23 C21 N20 HN20 14.4 0.0
C31 C24 C25 H24 240.0 241.6
C31 C24 C25 H24A 121.0 118.4
C25 C24 C31 C27 359.4 37.6
C25 C24 C31 C30 112.6 148.3
C25 C24 C31 H31 234.6 274.9
H24 C24 C25 H24A 241.0 236.8
C25 C24 C31 H24 120.0 118.4
C25 C24 C31 H24A 239.0 241.4
H24 C24 C31 H24A 119.0 123.0
C26 C27 C31 C24 338.1 337.0
O28 C27 C31 C24 96.0 92.0
C24 C31 C27 H27 216.7 214.5
C27 C31 C24 C30 246.8 249.3
C27 C31 C24 H31 124.8 122.8
C24 C31 C30 H30 124.9 129.0
C24 C31 C30 H30A 6.9 6.3
C25 C24 H24 C31 242.0 246.5
C25 C24 H24 H24A 121.0 123.4
C31 C24 H24 H24A 239.0 236.9
H24 C24 C31 C27 239.4 279.2
H24 C24 C31 C30 352.6 29.9
H24 C24 C31 H31 114.6 156.5
C25 C24 H24A C31 118.7 113.7
C25 C24 H24A H24 239.3 236.7
C31 C24 H24A H24 120.7 123.1
H24A C24 C31 C27 120.4 156.2
H24A C24 C31 C30 233.6 266.9
H24A C24 C31 H31 355.6 33.5
C26 C25 C24 C31 22.7 321.9
C26 C25 C24 H24 142.7 80.3
C26 C25 C24 H24A 261.7 203.5
H25 C25 C24 C31 146.9 80.8
H25 C25 C24 H24 266.9 199.1
H25 C25 C24 H24A 25.9 322.3
C24 C31 C27 C26 338.1 337.0
C27 C26 C25 H25 202.1 265.2
H26 C26 C27 H26A 117.9 121.3
O28 C27 C26 C31 245.8 247.6
C31 C27 C26 H27 235.3 237.4
C26 C27 C31 C30 219.5 223.0
C26 C27 C31 H31 98.1 99.6
O28 C27 C26 H27 121.1 125.0
C26 C27 O28 C29 151.2 152.5
H26 C26 C25 H25 322.1 24.5
C27 C26 H26 H26A 237.7 238.7
H26 C26 C27 C31 275.9 240.1
H26 C26 C27 O28 161.7 127.7
H26 C26 C27 H27 40.5 2.6
H26A C26 C25 H25 80.0 145.9
C27 C26 H26A H26 121.5 121.3
H26A C26 C27 C31 158.0 118.7
H26A C26 C27 O28 43.8 6.3
H26A C26 C27 H27 282.6 241.3
C27 C31 C24 H24 239.4 279.2
C27 C31 C24 H24A 120.4 156.2
C24 C31 C27 C30 118.6 114.0
C24 C31 C27 H31 240.0 237.4
C31 C27 C26 H26 275.9 240.1
C31 C27 C26 H26A 158.0 118.7
C26 C27 C31 O28 242.1 244.9
C26 C27 C31 H27 121.4 122.5
O28 C27 C31 H27 239.3 237.5
C31 C27 O28 C29 38.0 39.1
C27 C31 C30 H30 239.9 239.6
C27 C31 C30 H30A 121.9 117.0
C24 C31 C27 O28 96.0 92.0
O28 C27 C26 H26 161.7 127.7
O28 C27 C26 H26A 43.8 6.3
C26 C27 O28 C31 113.2 113.4
C26 C27 O28 H27 238.0 235.5
C31 C27 O28 H27 124.8 122.0
O28 C27 C31 C30 337.4 338.0
O28 C27 C31 H31 216.0 214.7
C27 O28 C29 H29 82.2 78.5
C27 O28 C29 H29A 200.7 200.7
H27 C27 C26 H26 40.5 2.6
H27 C27 C26 H26A 282.6 241.3
C26 C27 H27 C31 241.8 240.7
C26 C27 H27 O28 122.6 122.8
O28 C27 H27 C31 119.2 117.9
H27 C27 C31 C30 98.1 100.5
H27 C27 C31 H31 336.7 337.1
H27 C27 O28 C29 273.2 277.1
C29 O28 C27 C31 38.0 39.1
C29 O28 C27 H27 273.2 277.1
C30 C29 O28 H29 240.0 241.2
C30 C29 O28 H29A 121.6 118.9
H29 C29 O28 H29A 241.6 237.7
C24 C31 C30 C29 244.9 247.6
C27 C31 C30 C29 360.0 358.3
O28 C29 C30 H29 120.0 118.9
O28 C29 C30 H29A 238.4 241.1
H29 C29 C30 H29A 118.4 122.2
O28 C29 H29 H29A 121.7 122.3
C30 C29 H29 H29A 238.3 237.7
O28 C29 H29A H29 238.9 237.7
C30 C29 H29A H29 121.1 122.3
C30 C31 C24 H24 352.6 29.9
C30 C31 C24 H24A 233.6 266.9
C24 C31 C30 C27 245.0 249.4
C24 C31 C30 H31 120.4 126.2
C30 C31 C27 H27 98.1 100.5
C27 C31 C30 H31 235.5 236.9
C31 C30 C29 H29 262.5 266.1
C31 C30 C29 H29A 144.1 143.8
H30 C30 C31 H30A 118.1 122.7
H30 C30 C29 H29 22.5 24.7
H30 C30 C29 H29A 264.1 262.4
C31 C30 H30 H30A 237.9 237.2
H30A C30 C29 H29 140.5 147.2
H30A C30 C29 H29A 22.1 25.0
C31 C30 H30A H30 121.4 122.6
H31 C31 C24 H24 114.6 156.5
H31 C31 C24 H24A 355.6 33.5
C24 C31 H31 C27 119.4 117.7
C24 C31 H31 C30 237.1 235.9
H31 C31 C27 H27 336.7 337.1
C27 C31 H31 C30 117.7 118.2
H31 C31 C30 H30 4.5 2.8
H31 C31 C30 H30A 246.4 240.1
C38 C32 C19 H19 54.5 55.0
C19 C32 C38 H32 120.0 120.0
C19 C32 C38 H32A 240.1 240.0
H32 C32 C38 H32A 120.1 120.0
C32 C38 C33 H33 3.3 0.2
C32 C38 C37 H37 0.2 359.8
H32 C32 C19 H19 174.5 175.0
C19 C32 H32 C38 239.9 240.0
C19 C32 H32 H32A 119.9 120.1
C38 C32 H32 H32A 240.0 240.1
H32 C32 C38 C33 352.9 149.4
H32 C32 C38 C37 171.4 330.0
H32A C32 C19 H19 294.6 295.0
C19 C32 H32A C38 120.1 120.0
C19 C32 H32A H32 240.0 239.9
C38 C32 H32A H32 120.0 119.9
H32A C32 C38 C33 232.9 29.5
H32A C32 C38 C37 51.3 210.0
C33 C38 C32 H32 352.9 149.4
C33 C38 C32 H32A 232.9 29.5
C32 C38 C33 C37 178.4 180.5
C34 C33 C38 H33 180.0 179.8
C38 C33 C34 H34 172.4 180.3
C32 C38 C33 C34 183.4 180.0
C38 C33 C34 H33 180.0 180.2
C35 C34 C33 H34 180.0 180.0
H33 C33 C34 H34 352.4 0.1
C35 C34 C33 H33 172.4 180.1
C33 C34 C35 H34 180.0 180.0
H34 C34 C33 H33 352.4 0.1
C36 C35 C34 H34 187.0 180.0
H35 C35 C34 H34 7.0 0.0
C32 C38 C37 C36 180.2 180.0
C37 C36 C35 H35 176.4 179.9
H36 C36 C35 H35 356.4 359.9
C37 C38 C32 H32 171.4 330.0
C37 C38 C32 H32A 51.3 210.0
C32 C38 C37 C33 181.6 179.5
C37 C38 C33 H33 184.9 179.7
C38 C37 C36 H36 180.7 179.8
H37 C37 C36 H36 0.7 360.0