PDB Chemical Component 02I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 02I
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| P |
O5' |
1.624 |
1.610 |
| P |
OP3 |
1.478 |
1.610 |
| N1 |
C6 |
1.331 |
1.336 |
| C2 |
N1 |
1.323 |
1.317 |
| N3 |
C2 |
1.322 |
1.323 |
| N3 |
C4 |
1.352 |
1.332 |
| C4 |
C5 |
1.367 |
1.419 |
| C5 |
C6 |
1.413 |
1.407 |
| C5 |
N7 |
1.412 |
1.345 |
| C6 |
N6 |
1.317 |
1.384 |
| N6 |
H2N6 |
1.000 |
0.970 |
| C8 |
N7 |
1.311 |
1.297 |
| C8 |
C5' |
1.535 |
1.513 |
| N9 |
C4 |
1.359 |
1.348 |
| N9 |
C8 |
1.355 |
1.376 |
| C1' |
N9 |
1.460 |
1.474 |
| C1' |
C2' |
1.514 |
1.553 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| C2' |
C3' |
1.536 |
1.546 |
| C2' |
H12' |
1.100 |
1.089 |
| OP2 |
P |
1.478 |
1.609 |
| OP2 |
HOP2 |
0.950 |
0.966 |
| C3' |
O3' |
1.414 |
1.429 |
| C3' |
H3' |
1.100 |
1.089 |
| O3' |
HO3' |
0.951 |
0.967 |
| C4' |
C3' |
1.548 |
1.540 |
| C4' |
C5' |
1.563 |
1.535 |
| O4' |
C1' |
1.419 |
1.451 |
| O4' |
C4' |
1.431 |
1.444 |
| C5' |
O5' |
1.432 |
1.429 |
| H2 |
C2 |
1.080 |
1.080 |
| H1N6 |
N6 |
1.000 |
0.970 |
| H1' |
C1' |
1.100 |
1.090 |
| H22' |
C2' |
1.100 |
1.089 |
| H4' |
C4' |
1.100 |
1.090 |
| H5' |
C5' |
1.100 |
1.090 |
| P |
OP1 |
1.471 |
1.480 |
Bond Angles for 02I
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP3 |
P |
O5' |
110.1 |
109.5 |
| OP2 |
P |
O5' |
109.0 |
109.4 |
| P |
O5' |
C5' |
121.4 |
123.0 |
| O5' |
P |
OP1 |
151.5 |
109.4 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| OP3 |
P |
OP1 |
41.8 |
109.5 |
| C2 |
N1 |
C6 |
118.7 |
122.6 |
| N1 |
C6 |
C5 |
120.8 |
115.6 |
| N1 |
C6 |
N6 |
113.9 |
122.2 |
| N3 |
C4 |
C5 |
128.7 |
120.0 |
| C4 |
C5 |
C6 |
113.0 |
119.7 |
| C4 |
C5 |
N7 |
110.6 |
107.5 |
| C6 |
C5 |
N7 |
136.4 |
132.8 |
| C5 |
C6 |
N6 |
125.4 |
122.2 |
| C6 |
N6 |
H2N6 |
109.5 |
120.0 |
| H1N6 |
N6 |
H2N6 |
109.5 |
119.9 |
| N9 |
C8 |
C5' |
116.9 |
121.8 |
| C8 |
C5' |
C4' |
109.7 |
108.1 |
| C8 |
C5' |
O5' |
114.7 |
109.7 |
| C1' |
C2' |
C3' |
105.0 |
103.7 |
| C1' |
C2' |
H12' |
110.6 |
110.6 |
| C3' |
C2' |
H12' |
110.5 |
110.6 |
| C2' |
C3' |
O3' |
106.1 |
110.4 |
| C2' |
C3' |
H3' |
110.9 |
110.4 |
| OP2 |
P |
OP1 |
89.0 |
109.5 |
| O3' |
C3' |
H3' |
112.9 |
110.4 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C4' |
C3' |
H3' |
110.8 |
110.5 |
| O4' |
C4' |
C5' |
106.1 |
108.8 |
| C4' |
C5' |
O5' |
112.5 |
109.7 |
Torsion Angles for 02I
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
P |
OP3 |
HOP3 |
185.0 |
180.0 |
| OP3 |
P |
O5' |
OP1 |
7.0 |
120.0 |
| C8 |
C5' |
O5' |
P |
149.6 |
120.0 |
| OP2 |
P |
O5' |
OP1 |
233.5 |
240.0 |
| C4' |
C5' |
O5' |
P |
275.9 |
238.7 |
| OP2 |
P |
OP3 |
O5' |
127.7 |
240.0 |
| OP3 |
P |
O5' |
C5' |
186.4 |
175.0 |
| O5' |
P |
OP3 |
OP1 |
185.0 |
240.0 |
| OP2 |
P |
OP3 |
OP1 |
312.7 |
120.0 |
| C4 |
C5 |
C6 |
N1 |
358.2 |
0.1 |
| N1 |
C6 |
C5 |
N7 |
179.5 |
180.3 |
| C5 |
C6 |
N1 |
N6 |
179.8 |
180.1 |
| N1 |
C6 |
N6 |
H2N6 |
0.0 |
0.1 |
| C2 |
N1 |
C6 |
C5 |
1.2 |
359.9 |
| C2 |
N1 |
C6 |
N6 |
181.3 |
179.9 |
| N3 |
C2 |
N1 |
C6 |
0.5 |
0.0 |
| N3 |
C4 |
C5 |
C6 |
1.1 |
359.9 |
| N3 |
C4 |
C5 |
N7 |
180.2 |
179.8 |
| N1 |
C6 |
C5 |
C4 |
358.2 |
0.1 |
| C6 |
C5 |
C4 |
N7 |
181.0 |
180.1 |
| C4 |
C5 |
C6 |
N6 |
178.0 |
180.2 |
| N1 |
C6 |
C5 |
N6 |
180.2 |
179.9 |
| C4 |
C5 |
C6 |
N7 |
178.7 |
179.8 |
| C5 |
C6 |
N6 |
H2N6 |
180.2 |
180.0 |
| C4 |
C5 |
N7 |
C6 |
181.3 |
180.2 |
| N7 |
C5 |
C6 |
N6 |
359.3 |
0.4 |
| N1 |
C6 |
N6 |
C5 |
179.8 |
180.1 |
| N6 |
C6 |
C5 |
N7 |
359.3 |
0.4 |
| H1N6 |
N6 |
C6 |
H2N6 |
120.0 |
179.9 |
| P |
O5' |
C5' |
C8 |
149.6 |
120.0 |
| O4' |
C4' |
C5' |
C8 |
310.6 |
316.5 |
| C4' |
C5' |
C8 |
O5' |
232.3 |
240.3 |
| N9 |
C8 |
C5' |
C4' |
14.8 |
6.6 |
| N9 |
C8 |
C5' |
O5' |
142.5 |
126.3 |
| C1' |
N9 |
C8 |
C5' |
353.0 |
358.8 |
| C3' |
C2' |
C1' |
H12' |
240.7 |
241.5 |
| C1' |
C2' |
C3' |
O3' |
123.0 |
123.5 |
| C1' |
C2' |
C3' |
H3' |
245.9 |
245.8 |
| HOP3 |
OP3 |
P |
O5' |
185.0 |
180.0 |
| HOP3 |
OP3 |
P |
OP1 |
0.0 |
300.0 |
| C1' |
C2' |
C3' |
H12' |
119.3 |
118.5 |
| O3' |
C3' |
C2' |
H3' |
237.0 |
237.6 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
61.5 |
| C4' |
C3' |
C2' |
H3' |
118.2 |
118.9 |
| C1' |
C2' |
H12' |
C3' |
244.1 |
245.8 |
| H12' |
C2' |
C3' |
O3' |
3.7 |
4.9 |
| H12' |
C2' |
C3' |
H3' |
126.6 |
127.3 |
| OP3 |
P |
OP2 |
O5' |
231.8 |
120.0 |
| OP2 |
P |
O5' |
C5' |
52.9 |
295.0 |
| O5' |
P |
OP2 |
OP1 |
157.5 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
312.7 |
60.0 |
| OP3 |
P |
OP2 |
OP1 |
29.3 |
240.0 |
| HOP2 |
OP2 |
P |
O5' |
157.5 |
299.9 |
| HOP2 |
OP2 |
P |
OP1 |
360.0 |
180.0 |
| O3' |
C3' |
C2' |
H12' |
3.7 |
4.9 |
| C2' |
C3' |
O3' |
H3' |
121.7 |
122.4 |
| C4' |
C3' |
O3' |
H3' |
233.2 |
237.4 |
| H3' |
C3' |
C2' |
H12' |
126.6 |
127.3 |
| C2' |
C3' |
H3' |
O3' |
241.1 |
237.6 |
| H3' |
C3' |
O3' |
HO3' |
58.3 |
299.1 |
| HO3' |
O3' |
C3' |
H3' |
58.3 |
299.1 |
| C8 |
C5' |
C4' |
C3' |
65.1 |
71.3 |
| C4' |
C3' |
C2' |
H12' |
244.9 |
246.2 |
| C2' |
C3' |
C4' |
H3' |
241.7 |
241.2 |
| O3' |
C3' |
C4' |
H3' |
127.9 |
122.5 |
| C4' |
C3' |
O3' |
HO3' |
291.5 |
176.5 |
| P |
O5' |
C5' |
C4' |
275.9 |
238.7 |
| C8 |
C5' |
C4' |
O5' |
129.0 |
119.7 |
| C5' |
C4' |
C3' |
H3' |
25.1 |
22.0 |
| O4' |
C1' |
C2' |
H12' |
89.6 |
90.5 |
| C8 |
C5' |
C4' |
O4' |
310.6 |
316.5 |
| O4' |
C4' |
C3' |
H3' |
140.9 |
139.1 |
| O4' |
C4' |
C5' |
O5' |
181.6 |
196.8 |
| C5' |
O5' |
P |
OP1 |
179.4 |
55.0 |
| C8 |
C5' |
O5' |
C4' |
233.7 |
241.3 |
| C6 |
N6 |
H1N6 |
H2N6 |
240.0 |
180.1 |
| H1' |
C1' |
C2' |
H12' |
327.5 |
326.1 |
| H22' |
C2' |
C3' |
H3' |
5.3 |
4.3 |
| OP3 |
P |
OP1 |
O5' |
350.1 |
240.0 |
| OP2 |
P |
OP1 |
O5' |
130.5 |
120.0 |
| OP1 |
P |
O5' |
C5' |
179.4 |
55.0 |
| OP1 |
P |
OP3 |
HOP3 |
0.0 |
300.0 |