PDB Chemical Component 01T
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 01T
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C11 |
C5 |
1.397 |
1.379 |
| N4 |
C5 |
1.362 |
1.319 |
| C5 |
C6 |
1.523 |
1.507 |
| C7 |
C6 |
1.538 |
1.530 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.089 |
| C9 |
C7 |
1.513 |
1.530 |
| C10 |
C7 |
1.520 |
1.531 |
| C7 |
C8 |
1.519 |
1.530 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| C8 |
H8B |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.090 |
| C10 |
H10B |
1.100 |
1.091 |
| C16 |
C15 |
1.525 |
1.506 |
| C15 |
C14 |
1.397 |
1.398 |
| C15 |
C3 |
1.405 |
1.381 |
| C16 |
C17 |
1.506 |
1.507 |
| O18 |
C17 |
1.251 |
1.208 |
| C17 |
O19 |
1.248 |
1.342 |
| C26 |
C20 |
1.393 |
1.394 |
| C20 |
C14 |
1.485 |
1.484 |
| C20 |
C21 |
1.399 |
1.393 |
| C22 |
C21 |
1.391 |
1.380 |
| C21 |
H21 |
1.080 |
1.080 |
| C23 |
C22 |
1.394 |
1.383 |
| C22 |
H22 |
1.080 |
1.080 |
| C24 |
C23 |
1.505 |
1.506 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| C24 |
H24B |
1.100 |
1.090 |
| C25 |
C26 |
1.392 |
1.380 |
| C26 |
H26 |
1.080 |
1.080 |
| O19 |
HO19 |
0.950 |
0.967 |
| C16 |
H16 |
1.100 |
1.091 |
| C16 |
H16A |
1.100 |
1.090 |
| C2 |
C3 |
1.522 |
1.507 |
| C3 |
N4 |
1.373 |
1.319 |
| C1 |
C2 |
1.513 |
1.530 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.090 |
| C1 |
H1 |
1.100 |
1.091 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.089 |
| C9 |
H9A |
1.100 |
1.090 |
| C9 |
H9B |
1.100 |
1.089 |
| C14 |
C11 |
1.390 |
1.398 |
| C11 |
C12 |
1.524 |
1.507 |
| C12 |
N13 |
1.454 |
1.470 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| N13 |
HN13 |
1.000 |
1.009 |
| N13 |
HN1A |
1.000 |
1.008 |
| C25 |
C23 |
1.394 |
1.383 |
| C25 |
H25 |
1.080 |
1.080 |
Bond Angles for 01T
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C6 |
H6 |
108.0 |
109.5 |
| C5 |
C6 |
H6A |
108.0 |
109.4 |
| C7 |
C6 |
H6 |
108.0 |
109.5 |
| C7 |
C6 |
H6A |
108.0 |
109.5 |
| H6 |
C6 |
H6A |
110.9 |
109.5 |
| C7 |
C8 |
H8 |
109.5 |
109.5 |
| C7 |
C8 |
H8A |
109.5 |
109.4 |
| C7 |
C8 |
H8B |
109.5 |
109.5 |
| H8 |
C8 |
H8A |
109.5 |
109.5 |
| H8 |
C8 |
H8B |
109.4 |
109.5 |
| H8A |
C8 |
H8B |
109.5 |
109.4 |
| H10 |
C10 |
H10A |
109.5 |
109.5 |
| H10 |
C10 |
H10B |
109.5 |
109.5 |
| H10A |
C10 |
H10B |
109.5 |
109.5 |
| C16 |
C15 |
C14 |
119.8 |
120.5 |
| C16 |
C15 |
C3 |
121.6 |
120.5 |
| C3 |
C15 |
C14 |
118.6 |
119.0 |
| C15 |
C14 |
C20 |
121.9 |
120.9 |
| C15 |
C14 |
C11 |
120.5 |
118.2 |
| C15 |
C3 |
N4 |
119.5 |
120.9 |
| C17 |
O19 |
HO19 |
109.5 |
117.0 |
| C26 |
C20 |
C14 |
121.6 |
120.1 |
| C21 |
C20 |
C14 |
118.0 |
120.1 |
| C20 |
C14 |
C11 |
117.5 |
120.9 |
| C20 |
C21 |
H21 |
119.9 |
120.1 |
| C22 |
C21 |
H21 |
119.9 |
120.1 |
| C23 |
C22 |
H22 |
120.3 |
119.9 |
| C23 |
C24 |
H24 |
109.5 |
109.5 |
| C23 |
C24 |
H24A |
109.4 |
109.4 |
| C23 |
C24 |
H24B |
109.5 |
109.5 |
| C24 |
C23 |
C25 |
119.6 |
119.9 |
| H24 |
C24 |
H24A |
109.4 |
109.5 |
| H24 |
C24 |
H24B |
109.5 |
109.5 |
| H24A |
C24 |
H24B |
109.5 |
109.5 |
| C25 |
C26 |
H26 |
120.3 |
120.1 |
| H16 |
C16 |
H16A |
111.3 |
109.5 |
| C2 |
C3 |
N4 |
119.5 |
119.6 |
| C1 |
C2 |
H2 |
108.9 |
109.4 |
| C1 |
C2 |
H2A |
108.9 |
109.5 |
| H2 |
C2 |
H2A |
110.0 |
109.5 |
| H1 |
C1 |
H1A |
109.5 |
109.4 |
| H1 |
C1 |
H1B |
109.5 |
109.5 |
| H1A |
C1 |
H1B |
109.4 |
109.5 |
| H9 |
C9 |
H9A |
109.5 |
109.5 |
| H9 |
C9 |
H9B |
109.5 |
109.5 |
| H9A |
C9 |
H9B |
109.5 |
109.5 |
| C11 |
C12 |
N13 |
110.0 |
109.4 |
| C11 |
C12 |
H12 |
109.3 |
109.5 |
| C11 |
C12 |
H12A |
109.3 |
109.5 |
| N13 |
C12 |
H12 |
109.3 |
109.5 |
| N13 |
C12 |
H12A |
109.3 |
109.5 |
| C12 |
N13 |
HN13 |
109.5 |
110.9 |
| C12 |
N13 |
HN1A |
109.5 |
111.0 |
| H12 |
C12 |
H12A |
109.6 |
109.5 |
| HN13 |
N13 |
HN1A |
109.4 |
111.1 |
| C23 |
C25 |
H25 |
119.9 |
119.9 |
Torsion Angles for 01T
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C5 |
C6 |
H6 |
27.3 |
217.8 |
| C11 |
C5 |
C6 |
H6A |
147.3 |
337.8 |
| N4 |
C5 |
C6 |
H6 |
208.0 |
38.1 |
| N4 |
C5 |
C6 |
H6A |
328.0 |
158.1 |
| C7 |
C6 |
C5 |
H6 |
240.0 |
240.0 |
| C7 |
C6 |
C5 |
H6A |
120.0 |
120.0 |
| H6 |
C6 |
C5 |
H6A |
240.0 |
240.0 |
| C5 |
C6 |
C7 |
H6 |
120.0 |
120.0 |
| C5 |
C6 |
C7 |
H6A |
240.0 |
240.1 |
| H6 |
C6 |
C7 |
H6A |
120.0 |
120.1 |
| C5 |
C6 |
H6 |
H6A |
118.1 |
120.0 |
| C7 |
C6 |
H6 |
H6A |
241.9 |
240.0 |
| C5 |
C6 |
H6A |
H6 |
241.9 |
240.0 |
| C7 |
C6 |
H6A |
H6 |
118.1 |
120.1 |
| C9 |
C7 |
C6 |
H6 |
286.3 |
184.5 |
| C9 |
C7 |
C6 |
H6A |
166.3 |
64.4 |
| C9 |
C7 |
C8 |
H8 |
303.4 |
173.8 |
| C9 |
C7 |
C8 |
H8A |
63.5 |
293.8 |
| C9 |
C7 |
C8 |
H8B |
183.5 |
53.7 |
| C10 |
C7 |
C6 |
H6 |
165.0 |
64.5 |
| C10 |
C7 |
C6 |
H6A |
45.1 |
304.4 |
| C10 |
C7 |
C8 |
H8 |
58.4 |
293.8 |
| C10 |
C7 |
C8 |
H8A |
178.4 |
53.8 |
| C10 |
C7 |
C8 |
H8B |
298.4 |
173.7 |
| C8 |
C7 |
C6 |
H6 |
44.7 |
304.5 |
| C8 |
C7 |
C6 |
H6A |
284.7 |
184.5 |
| H8 |
C8 |
C7 |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
C7 |
H8B |
119.9 |
120.0 |
| H8A |
C8 |
C7 |
H8B |
240.0 |
240.1 |
| C7 |
C8 |
H8 |
H8A |
120.0 |
120.0 |
| C7 |
C8 |
H8 |
H8B |
240.0 |
239.9 |
| H8A |
C8 |
H8 |
H8B |
120.0 |
119.9 |
| C7 |
C8 |
H8A |
H8 |
239.9 |
240.0 |
| C7 |
C8 |
H8A |
H8B |
120.0 |
120.0 |
| H8 |
C8 |
H8A |
H8B |
240.1 |
240.0 |
| C7 |
C8 |
H8B |
H8 |
120.0 |
120.1 |
| C7 |
C8 |
H8B |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
H8B |
H8A |
120.0 |
120.0 |
| H10A |
C10 |
H10 |
H10B |
120.0 |
120.1 |
| H10 |
C10 |
H10A |
H10B |
240.0 |
239.9 |
| H10 |
C10 |
H10B |
H10A |
120.0 |
120.1 |
| C3 |
C15 |
C16 |
C14 |
181.8 |
180.0 |
| C16 |
C15 |
C14 |
C20 |
3.4 |
0.0 |
| C16 |
C15 |
C14 |
C11 |
180.3 |
180.3 |
| C16 |
C15 |
C3 |
N4 |
179.1 |
179.7 |
| C16 |
C15 |
C14 |
C3 |
181.8 |
180.0 |
| C14 |
C15 |
C3 |
N4 |
0.9 |
359.7 |
| C26 |
C20 |
C14 |
C15 |
248.2 |
244.8 |
| C21 |
C20 |
C14 |
C15 |
70.2 |
65.1 |
| C20 |
C14 |
C15 |
C11 |
183.1 |
179.7 |
| C16 |
C15 |
C3 |
C14 |
178.2 |
180.0 |
| C3 |
C15 |
C14 |
C20 |
181.6 |
180.0 |
| C3 |
C15 |
C14 |
C11 |
358.5 |
0.3 |
| C2 |
C3 |
C15 |
N4 |
180.0 |
180.3 |
| C17 |
C16 |
C15 |
C14 |
248.7 |
90.0 |
| C17 |
C16 |
C15 |
C3 |
70.6 |
270.0 |
| C16 |
C17 |
O19 |
HO19 |
179.9 |
180.0 |
| O18 |
C17 |
O19 |
HO19 |
360.0 |
360.0 |
| C15 |
C14 |
C20 |
C26 |
248.2 |
244.8 |
| C21 |
C20 |
C26 |
C14 |
177.9 |
179.7 |
| C26 |
C20 |
C14 |
C11 |
71.2 |
64.4 |
| C26 |
C20 |
C21 |
H21 |
181.4 |
180.2 |
| C15 |
C14 |
C20 |
C11 |
177.0 |
180.3 |
| C14 |
C20 |
C21 |
H21 |
359.4 |
360.0 |
| C15 |
C14 |
C20 |
C21 |
70.2 |
65.1 |
| C26 |
C20 |
C21 |
C14 |
182.0 |
180.3 |
| C21 |
C20 |
C14 |
C11 |
253.2 |
244.7 |
| C22 |
C21 |
C20 |
H21 |
180.0 |
180.1 |
| C22 |
C21 |
C20 |
C14 |
179.4 |
180.0 |
| C20 |
C21 |
C22 |
H21 |
180.0 |
179.9 |
| H21 |
C21 |
C20 |
C14 |
359.4 |
360.0 |
| C23 |
C22 |
C21 |
H21 |
179.1 |
180.0 |
| H22 |
C22 |
C21 |
H21 |
359.1 |
0.0 |
| C24 |
C23 |
C22 |
H22 |
0.1 |
360.0 |
| H24 |
C24 |
C23 |
H24A |
240.0 |
240.0 |
| H24 |
C24 |
C23 |
H24B |
120.0 |
120.0 |
| H24A |
C24 |
C23 |
H24B |
240.0 |
240.0 |
| C24 |
C23 |
C25 |
H25 |
359.7 |
0.0 |
| C23 |
C24 |
H24 |
H24A |
120.0 |
119.9 |
| C23 |
C24 |
H24 |
H24B |
240.0 |
239.9 |
| H24 |
C24 |
C23 |
C25 |
269.8 |
90.0 |
| H24A |
C24 |
H24 |
H24B |
120.0 |
120.0 |
| C23 |
C24 |
H24A |
H24 |
240.0 |
240.0 |
| C23 |
C24 |
H24A |
H24B |
120.0 |
120.0 |
| H24A |
C24 |
C23 |
C25 |
29.8 |
210.0 |
| H24 |
C24 |
H24A |
H24B |
240.0 |
240.0 |
| C23 |
C24 |
H24B |
H24 |
120.0 |
120.1 |
| C23 |
C24 |
H24B |
H24A |
240.0 |
240.1 |
| H24B |
C24 |
C23 |
C25 |
149.8 |
329.9 |
| H24 |
C24 |
H24B |
H24A |
120.0 |
120.0 |
| C24 |
C23 |
C25 |
C26 |
179.7 |
180.0 |
| H26 |
C26 |
C20 |
C14 |
0.5 |
359.9 |
| H16 |
C16 |
C15 |
C14 |
8.7 |
210.0 |
| H16 |
C16 |
C15 |
C3 |
190.6 |
30.0 |
| H16A |
C16 |
C15 |
C14 |
128.7 |
330.0 |
| H16A |
C16 |
C15 |
C3 |
310.6 |
150.0 |
| C2 |
C3 |
C15 |
C14 |
180.9 |
180.0 |
| C15 |
C3 |
C2 |
N4 |
180.0 |
179.7 |
| N4 |
C3 |
C15 |
C14 |
0.9 |
359.7 |
| C1 |
C2 |
C3 |
N4 |
302.2 |
270.3 |
| H2 |
C2 |
C1 |
H2A |
120.0 |
120.0 |
| H2 |
C2 |
C3 |
N4 |
62.2 |
30.3 |
| C1 |
C2 |
H2 |
H2A |
240.7 |
240.0 |
| H2A |
C2 |
C3 |
N4 |
182.3 |
150.3 |
| C1 |
C2 |
H2A |
H2 |
119.3 |
120.0 |
| H1 |
C1 |
C2 |
H2 |
60.0 |
60.0 |
| H1 |
C1 |
C2 |
H2A |
300.0 |
300.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H2 |
180.0 |
180.0 |
| H1A |
C1 |
C2 |
H2A |
60.0 |
60.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
H2 |
300.0 |
300.0 |
| H1B |
C1 |
C2 |
H2A |
180.0 |
180.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| H9A |
C9 |
H9 |
H9B |
120.0 |
120.1 |
| H9 |
C9 |
H9A |
H9B |
240.0 |
240.0 |
| H9 |
C9 |
H9B |
H9A |
120.0 |
120.0 |
| C15 |
C14 |
C11 |
C20 |
183.0 |
179.7 |
| C14 |
C11 |
C12 |
H12 |
192.3 |
36.0 |
| C14 |
C11 |
C12 |
H12A |
312.3 |
156.1 |
| C15 |
C14 |
C11 |
C12 |
181.4 |
180.0 |
| C20 |
C14 |
C11 |
C12 |
358.4 |
0.3 |
| N13 |
C12 |
C11 |
H12 |
240.0 |
240.0 |
| N13 |
C12 |
C11 |
H12A |
120.0 |
119.9 |
| C11 |
C12 |
N13 |
HN13 |
180.0 |
183.0 |
| C11 |
C12 |
N13 |
HN1A |
300.0 |
307.0 |
| H12 |
C12 |
C11 |
H12A |
240.0 |
240.0 |
| C11 |
C12 |
N13 |
H12 |
120.0 |
120.0 |
| C11 |
C12 |
N13 |
H12A |
240.0 |
240.1 |
| H12 |
C12 |
N13 |
H12A |
120.0 |
120.0 |
| HN13 |
N13 |
C12 |
HN1A |
240.0 |
236.0 |
| C11 |
C12 |
H12 |
N13 |
239.5 |
240.0 |
| C11 |
C12 |
H12 |
H12A |
119.8 |
120.0 |
| N13 |
C12 |
H12 |
H12A |
240.2 |
240.0 |
| H12 |
C12 |
N13 |
HN13 |
60.0 |
63.0 |
| H12 |
C12 |
N13 |
HN1A |
180.0 |
187.0 |
| C11 |
C12 |
H12A |
N13 |
120.4 |
119.9 |
| C11 |
C12 |
H12A |
H12 |
240.2 |
240.0 |
| N13 |
C12 |
H12A |
H12 |
119.8 |
120.0 |
| H12A |
C12 |
N13 |
HN13 |
300.0 |
303.0 |
| H12A |
C12 |
N13 |
HN1A |
60.0 |
66.9 |
| HN13 |
N13 |
C12 |
H12 |
60.0 |
63.0 |
| HN13 |
N13 |
C12 |
H12A |
300.0 |
303.0 |
| C12 |
N13 |
HN13 |
HN1A |
120.0 |
123.9 |
| HN1A |
N13 |
C12 |
H12 |
180.0 |
187.0 |
| HN1A |
N13 |
C12 |
H12A |
60.0 |
66.9 |
| C12 |
N13 |
HN1A |
HN13 |
240.0 |
236.1 |
| C25 |
C23 |
C22 |
H22 |
180.5 |
179.7 |
| C25 |
C23 |
C24 |
H24 |
269.8 |
90.0 |
| C25 |
C23 |
C24 |
H24A |
29.8 |
210.0 |
| C25 |
C23 |
C24 |
H24B |
149.8 |
329.9 |
| C23 |
C25 |
C26 |
H26 |
181.2 |
180.1 |
| H25 |
C25 |
C26 |
H26 |
1.2 |
0.1 |