PDB Chemical Component 00Q

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 00Q

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CX NY 1.340 1.348
CX CAX 1.524 1.507
NX C 1.311 1.347
OX CX 1.254 1.212
CY CAY 1.545 1.530
OY CY 1.251 1.429
CAX NX 1.501 1.470
CAY NY 1.454 1.465
CAY CBY 1.537 1.529
CBX CAX 1.511 1.543
CBX CGX 1.514 1.551
CBY CGY 1.503 1.530
CDX NX 1.468 1.475
CDY NEY 1.425 1.465
NEY CZY 1.309 1.374
CGX CDX 1.512 1.552
CGY CDY 1.474 1.530
NH1 HNH1 1.000 0.970
CZY NH1 1.358 1.303
CZY NH2 1.332 1.375
C O 1.239 1.213
C CA 1.525 1.506
N CA 1.504 1.469
S1 C17 1.811 1.706
CA CB 1.534 1.530
CB CG 1.504 1.507
CG CD2 1.397 1.382
CZ CE2 1.407 1.382
N11 C17 1.277 1.279
C17 CY 1.876 1.507
C21 N11 1.374 1.347
C31 C21 1.416 1.410
C41 C31 1.380 1.362
C51 C41 1.440 1.388
C51 C61 1.397 1.376
C61 C71 1.413 1.394
C71 S1 1.768 1.761
C71 C21 1.413 1.400
CD1 CG 1.405 1.382
CD1 CE1 1.416 1.382
CD2 CE2 1.433 1.382
CE1 CZ 1.415 1.383
CY HY 1.100 1.091
NY HNY 1.000 0.970
OY HOY 0.950 0.967
CAX HAX 1.099 1.090
CAY HAY 1.100 1.090
CBX HBX 1.100 1.090
CBX HBXA 1.100 1.090
CBY HBY 1.100 1.090
CBY HBYA 1.100 1.090
CDX HDX 1.100 1.090
CDX H12 1.100 1.090
CDY HDY 1.100 1.090
CDY HDYA 1.100 1.090
NEY HNEY 1.000 0.969
CGX HGX 1.100 1.090
CGX H17 1.100 1.090
CGY HGY 1.099 1.090
CGY HGYA 1.100 1.091
NH2 HNH2 1.000 0.970
NH2 HNHA 1.000 0.970
N HN 1.000 1.009
N HNA 1.000 1.008
CA HA 1.100 1.090
CB HB 1.100 1.090
CB HBA 1.100 1.090
CZ HZ 1.080 1.080
C31 H31 1.080 1.080
C41 H41 1.081 1.080
C51 H51 1.080 1.080
C61 H61 1.080 1.079
CD1 HD1 1.080 1.080
CD2 HD2 1.080 1.081
CE1 HE1 1.080 1.080
CE2 HE2 1.080 1.080

Bond Angles for 00Q

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OX CX NY 121.0 120.0
CX NY HNY 116.1 120.0
CX CAX HAX 103.2 109.9
OY CY CAY 118.9 109.4
CY CAY NY 113.6 109.5
CY CAY CBY 105.5 109.5
CAY CY HY 100.2 109.5
CY CAY HAY 111.4 109.4
OY CY HY 106.6 109.4
CAY NY HNY 116.1 120.0
CAY CBY CGY 113.2 109.5
CBY CAY HAY 110.0 109.5
CAY CBY HBY 108.2 109.5
CAY CBY HBYA 108.2 109.5
CBX CAX HAX 108.0 110.0
CBX CGX CDX 107.6 101.5
CGX CBX HBX 109.7 110.7
CGX CBX HBXA 109.7 110.8
CBX CGX HGX 110.1 111.0
CBX CGX H17 110.1 111.0
CBY CGY CDY 110.8 109.5
CGY CBY HBY 108.2 109.4
CGY CBY HBYA 108.2 109.4
CBY CGY HGY 109.0 109.5
CBY CGY HGYA 109.0 109.4
CDY NEY CZY 129.0 120.0
NEY CDY HDY 108.7 109.5
NEY CDY HDYA 108.8 109.5
CDY NEY HNEY 115.4 120.0
NEY CZY NH1 115.3 120.0
NEY CZY NH2 119.8 120.0
CZY NEY HNEY 115.5 120.0
CGX CDX HDX 110.4 110.5
CGX CDX H12 110.4 110.4
CDX CGX HGX 110.1 111.2
CDX CGX H17 110.1 110.9
CGY CDY HDY 108.8 109.4
CGY CDY HDYA 108.8 109.4
CZY NH1 HNH1 112.0 120.0
CZY NH2 HNH2 120.0 119.9
CZY NH2 HNHA 120.0 120.0
C CA CB 112.9 109.5
C CA HA 109.3 109.5
N CA CB 107.9 109.4
CA N HN 109.5 111.0
CA N HNA 109.5 111.1
N CA HA 114.2 109.5
S1 C17 N11 115.8 111.6
CA CB CG 112.3 109.5
CB CA HA 107.1 109.5
CA CB HB 108.5 109.5
CA CB HBA 108.6 109.5
CB CG CD2 120.7 120.0
CG CB HB 108.6 109.5
CG CB HBA 108.6 109.5
CD1 CG CD2 120.5 120.0
CG CD2 CE2 119.4 120.0
CG CD2 HD2 120.3 120.0
CE1 CZ CE2 119.3 120.0
CZ CE2 HE2 119.8 120.0
C17 CY HY 115.2 109.5
C41 C31 H31 120.3 119.8
C51 C41 H41 119.8 119.6
C51 C61 C71 118.7 119.9
C61 C51 H51 120.9 120.0
C51 C61 H61 120.6 120.1
C71 C61 H61 120.7 120.0
CD1 CE1 CZ 120.1 120.0
CE1 CD1 HD1 119.9 120.0
CD1 CE1 HE1 119.9 120.0
CE2 CD2 HD2 120.3 120.0
CD2 CE2 HE2 119.8 120.0
CE1 CZ HZ 120.4 120.0
CZ CE1 HE1 120.0 120.0
HBX CBX HBXA 109.2 110.8
HBY CBY HBYA 110.7 109.5
HDX CDX H12 108.5 110.4
HDY CDY HDYA 110.2 109.5
HGX CGX H17 108.9 111.0
HGY CGY HGYA 109.9 109.4
HNH2 NH2 HNHA 120.0 120.0
HN N HNA 109.4 111.0
HB CB HBA 110.4 109.5

Torsion Angles for 00Q

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
NY CX CAX HAX 19.1 58.9
CY CAY NY CX 247.0 275.1
CAY NY CX HNY 180.0 179.9
CBX CAX CX HAX 241.9 238.9
NX C CA HA 350.6 320.0
OX CX NY HNY 172.9 179.8
OX CX CAX HAX 208.0 239.2
OY CY CAY HY 244.5 240.1
CY CAY NY HNY 67.0 95.0
CY CAY CBY CGY 161.3 175.0
CBY CAY CY HAY 240.6 240.0
CY CAY CBY HBY 281.3 295.0
CY CAY CBY HBYA 41.3 55.0
C17 CY CAY HY 122.2 120.0
OY CY CAY NY 167.2 180.0
OY CY CAY CBY 294.1 300.0
CAY CY OY HY 112.1 120.0
OY CY CAY HAY 53.5 60.1
C17 CY OY HY 237.2 240.0
CX NY CAY HNY 180.0 180.1
CY CAY NY CBY 121.8 120.0
NY CAY CY HY 282.8 299.9
CY CAY NY HAY 240.4 240.1
CY CAY CBY NY 233.9 240.0
CBY CAY CY HY 49.7 59.9
CY CAY CBY HAY 120.4 120.0
CBY CAY NY HNY 305.2 335.0
CAY CBY CGY CDY 185.2 180.0
CGY CBY CAY HBY 240.0 240.0
CGY CBY CAY HBYA 120.0 120.0
CAY CBY CGY HGY 305.2 300.1
CAY CBY CGY HGYA 65.2 60.0
HBY CBY CAY HBYA 240.0 240.0
CX CAX CBX HAX 115.4 121.1
CGX CBX CAX HAX 120.8 141.7
CBX CGX CDX HDX 236.3 278.5
CBX CGX CDX H12 116.3 156.1
CDX CGX CBX HGX 240.0 241.8
CDX CGX CBX H17 120.0 117.8
HBX CBX CGX HBXA 120.0 123.3
HGX CGX CBX H17 240.0 236.0
CGY CBY CAY HAY 41.0 55.0
CAY CBY CGY HBY 120.0 120.0
CAY CBY CGY HBYA 240.0 240.0
CBY CGY CDY HDY 48.2 60.0
CBY CGY CDY HDYA 288.2 300.0
HBY CBY CGY HBYA 120.0 119.9
HGY CGY CBY HGYA 240.0 240.0
CBY CGY CDY NEY 168.1 180.0
CDY NEY CZY NH1 357.0 0.0
CDY NEY CZY NH2 163.1 180.0
CZY NEY CDY HNEY 180.0 180.0
CGY CDY NEY HDY 240.0 240.0
CGY CDY NEY HDYA 120.0 120.0
HDY CDY NEY HDYA 240.0 239.9
CZY NEY CDY HDY 291.9 300.0
CZY NEY CDY HDYA 51.9 60.0
CDY NEY CZY HNEY 180.0 180.0
NEY CZY NH1 HNH1 165.5 180.0
NEY CZY NH2 HNH2 195.1 0.1
NEY CZY NH2 HNHA 15.1 180.0
CDX CGX CBX HBX 243.7 206.0
CDX CGX CBX HBXA 123.7 82.7
CBX CGX CDX HGX 120.0 118.1
CBX CGX CDX H17 240.0 242.0
HDX CDX CGX H12 120.0 122.4
HGX CGX CDX H17 120.0 123.9
CDY CGY CBY HBY 65.2 60.0
CDY CGY CBY HBYA 305.2 300.0
CBY CGY CDY HGY 120.0 120.1
CBY CGY CDY HGYA 240.0 240.0
CGY CDY NEY CZY 171.9 180.0
NEY CDY CGY HDY 120.0 120.0
NEY CDY CGY HDYA 240.0 240.0
CGY CDY NEY HNEY 351.9 0.0
HDY CDY CGY HDYA 120.0 119.9
NEY CZY NH1 NH2 165.5 180.0
NH1 CZY NEY HNEY 177.0 180.0
NEY CZY NH2 NH1 195.1 180.0
NH2 CZY NEY HNEY 343.1 359.9
NH2 CZY NH1 HNH1 0.0 0.1
HNH2 NH2 CZY HNHA 180.0 180.1
O C CA CB 286.5 260.0
O C CA HA 167.4 140.0
N CA C CB 117.6 120.0
C CA N HN 180.0 176.0
C CA N HNA 300.0 300.0
N CA C HA 236.7 240.0
C CA CB CG 288.1 185.0
CB CA C HA 119.1 120.0
C CA CB HB 48.1 305.0
C CA CB HBA 168.1 65.0
C CA N CB 239.0 240.0
C CA N HA 120.1 120.0
N CA CB CG 171.8 65.0
CB CA N HA 241.1 240.0
N CA CB HB 291.8 185.0
N CA CB HBA 51.8 305.0
HN N CA HNA 240.0 236.0
S1 C17 CY HY 192.5 15.1
C CA CB HA 239.7 240.0
CB CA N HN 301.0 296.0
CB CA N HNA 61.0 60.0
N CA CB HA 123.3 120.0
CA CB CG CD2 123.9 90.0
CG CB CA HB 240.0 240.0
CG CB CA HBA 120.0 120.0
HB CB CA HBA 240.0 240.0
CG CB CA HA 48.5 305.0
CA CB CG HB 120.0 120.0
CA CB CG HBA 240.0 240.0
CD1 CG CB CD2 177.1 180.3
CB CG CD2 CE2 177.0 180.0
CB CG CD2 HD2 357.0 360.0
HB CB CG HBA 120.0 120.0
CD2 CG CB HB 3.9 330.0
CD2 CG CB HBA 243.9 210.0
CE2 CD2 CG HD2 180.0 180.1
CG CD2 CE2 HE2 181.7 180.3
CD1 CE1 CZ CE2 357.2 359.7
CZ CE2 CD2 HD2 181.7 180.0
CD2 CE2 CZ HE2 180.0 180.4
CE1 CZ CE2 HZ 180.0 180.3
CE2 CZ CE1 HE1 177.2 179.8
N11 C17 CY HY 20.9 195.0
CAY CY C17 HY 247.0 239.9
C17 CY CAY HAY 291.3 300.0
OY CY C17 HY 117.1 119.9
C51 C41 C31 H31 179.3 180.0
C61 C51 C41 H41 196.8 180.0
C71 C61 C51 H61 180.0 180.0
C71 C61 C51 H51 168.4 179.9
C51 C61 C71 H61 180.0 180.0
CB CG CD1 CD2 182.9 179.7
CD1 CG CB HB 181.0 150.3
CD1 CG CB HBA 61.0 30.3
CD1 CG CD2 CE2 360.0 359.7
CD1 CG CD2 HD2 180.0 179.7
CE1 CD1 CG CD2 357.0 0.3
CD1 CE1 CZ HZ 177.3 180.0
CZ CE1 CD1 HE1 180.0 180.0
CG CD2 CE2 HD2 180.0 179.9
CE1 CZ CE2 CD2 359.7 0.3
CZ CE2 CD2 HE2 180.0 179.6
CE1 CZ CE2 HE2 179.7 180.0
CZ CE1 CD1 HD1 184.5 180.0
CD1 CE1 CZ HE1 180.0 180.0
OY CY HY CAY 124.5 119.9
HY CY CAY NY 282.8 299.9
HY CY CAY CBY 49.7 59.9
HY CY CAY HAY 169.1 180.0
HOY OY CY CAY 180.0 299.9
HOY OY CY HY 67.9 180.0
CY CAY HAY NY 121.2 119.9
CY CAY HAY CBY 243.3 240.0
HAY CAY CY HY 169.1 180.0
HAY CAY NY HNY 186.6 214.9
HAY CAY CBY CGY 41.0 55.0
HAY CAY CBY HBY 161.0 175.0
HAY CAY CBY HBYA 281.0 295.0
HBX CBX CAX HAX 240.8 260.0
HBX CBX CGX CDX 243.7 206.0
CGX CBX HBX HBXA 239.7 236.7
HBX CBX CGX HGX 3.7 324.2
HBX CBX CGX H17 123.7 88.1
HBXA CBX CAX HAX 0.8 23.3
HBXA CBX CGX CDX 123.7 82.7
CGX CBX HBXA HBX 120.3 123.2
HBXA CBX CGX HGX 243.7 200.9
HBXA CBX CGX H17 3.7 324.8
CAY CBY HBY CGY 236.9 240.0
HBY CBY CAY HAY 161.0 175.0
CAY CBY HBY HBYA 118.5 120.0
HBY CBY CGY CDY 65.2 60.0
CGY CBY HBY HBYA 241.6 240.1
HBY CBY CGY HGY 185.2 180.0
HBY CBY CGY HGYA 305.2 300.0
CAY CBY HBYA CGY 123.1 120.0
HBYA CBY CAY HAY 281.0 295.0
CAY CBY HBYA HBY 241.5 239.9
HBYA CBY CGY CDY 305.2 300.0
CGY CBY HBYA HBY 118.4 119.9
HBYA CBY CGY HGY 65.2 60.1
HBYA CBY CGY HGYA 185.2 180.0
CGX CDX HDX H12 238.8 237.6
HDX CDX CGX HGX 116.2 160.4
HDX CDX CGX H17 356.2 36.5
CGX CDX H12 HDX 121.2 122.5
H12 CDX CGX HGX 356.3 38.0
H12 CDX CGX H17 236.2 274.1
HDY CDY NEY CZY 291.9 300.0
NEY CDY HDY HDYA 119.1 120.1
HDY CDY NEY HNEY 111.9 120.0
CGY CDY HDY HDYA 240.9 240.1
HDYA CDY NEY CZY 51.9 60.0
NEY CDY HDYA HDY 240.9 239.9
HDYA CDY NEY HNEY 231.9 240.1
CGY CDY HDYA HDY 119.1 119.9
CDY NEY HNEY CZY 180.0 180.0
HNEY NEY CDY HDY 111.9 120.0
HNEY NEY CDY HDYA 231.9 240.1
HNEY NEY CZY NH1 177.0 180.0
HNEY NEY CZY NH2 343.1 359.9
CBX CGX HGX CDX 241.5 247.8
HGX CGX CBX HBX 3.7 324.2
HGX CGX CBX HBXA 243.7 200.9
CBX CGX HGX H17 120.7 124.0
HGX CGX CDX HDX 116.2 160.4
HGX CGX CDX H12 356.3 38.0
CDX CGX HGX H17 239.2 236.1
CBX CGX H17 CDX 118.5 112.0
H17 CGX CBX HBX 123.7 88.1
H17 CGX CBX HBXA 3.7 324.8
CBX CGX H17 HGX 239.3 236.0
H17 CGX CDX HDX 356.2 36.5
H17 CGX CDX H12 236.2 274.1
CDX CGX H17 HGX 120.8 124.0
CBY CGY HGY CDY 238.9 239.9
HGY CGY CBY HBY 185.2 180.0
HGY CGY CBY HBYA 65.2 60.1
CBY CGY HGY HGYA 119.5 120.0
HGY CGY CDY HDY 288.2 299.9
HGY CGY CDY HDYA 168.2 180.0
CBY CGY HGYA CDY 121.1 120.0
HGYA CGY CBY HBY 305.2 300.0
HGYA CGY CBY HBYA 185.2 180.0
CBY CGY HGYA HGY 240.5 240.0
HGYA CGY CDY HDY 168.2 180.0
HGYA CGY CDY HDYA 48.2 60.0
CZY NH2 HNH2 HNHA 180.0 179.9
CZY NH2 HNHA HNH2 180.0 180.1
HN N CA CB 301.0 296.0
CA N HN HNA 120.0 124.0
HN N CA HA 59.9 56.0
HNA N CA CB 61.0 60.0
CA N HNA HN 240.0 236.0
HNA N CA HA 179.9 180.0
C CA HA CB 122.6 120.0
N CA HA CB 240.7 240.0
HA CA N HN 59.9 56.0
HA CA N HNA 179.9 180.0
HA CA CB CG 48.5 305.0
HA CA CB HB 168.5 65.0
HA CA CB HBA 288.5 185.0
CA CB HB CG 237.7 240.0
HB CB CA HA 168.5 65.0
CA CB HB HBA 118.9 120.0
HB CB CG CD2 3.9 330.0
CG CB HB HBA 241.1 240.0
CA CB HBA CG 122.3 120.0
HBA CB CA HA 288.5 185.0
CA CB HBA HB 241.2 240.0
HBA CB CG CD2 243.9 210.0
CG CB HBA HB 118.9 120.0
CE1 CZ HZ CE2 180.0 179.7
HZ CZ CE2 HE2 359.7 359.7
HZ CZ CE1 HE1 357.3 0.0
H41 C41 C31 H31 359.2 360.0
H51 C51 C41 H41 16.8 0.1
H51 C51 C61 C71 168.4 179.9
H51 C51 C61 H61 348.4 359.9
C51 C61 H61 C71 180.0 180.0
H61 C61 C51 H51 348.4 359.9
HD1 CD1 CG CD2 177.0 180.2
HD1 CD1 CE1 CZ 184.5 180.0
HD1 CD1 CE1 HE1 4.5 0.0
CG CD2 HD2 CE2 180.0 180.1
HD2 CD2 CE2 HE2 1.7 0.4
HE1 CE1 CZ CE2 177.2 179.8
CD1 CE1 HE1 CZ 180.0 180.0
HE1 CE1 CD1 HD1 4.5 0.0
HE1 CE1 CZ HZ 357.3 0.0
HE2 CE2 CD2 HD2 1.7 0.4