PDB Chemical Component 00E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 00E
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
CA |
1.534 |
1.507 |
| C |
O |
1.436 |
1.208 |
| CA |
NB |
1.546 |
1.468 |
| NB |
CD1 |
1.541 |
1.470 |
| OZ |
CE1 |
1.529 |
1.430 |
| CD1 |
CE1 |
1.533 |
1.531 |
| CD2 |
NB |
1.551 |
1.470 |
| CD2 |
CE2 |
1.536 |
1.531 |
| CE2 |
OZ |
1.529 |
1.431 |
| C |
OXT |
1.430 |
1.343 |
| CA |
HAA |
1.100 |
1.090 |
| CA |
HAB |
1.100 |
1.090 |
| CD1 |
HD1 |
1.100 |
1.089 |
| CD1 |
HD1A |
1.100 |
1.091 |
| CD2 |
HD2 |
1.100 |
1.090 |
| CD2 |
HD2A |
1.100 |
1.090 |
| CE1 |
HE1 |
1.100 |
1.089 |
| CE1 |
HE1A |
1.100 |
1.090 |
| CE2 |
HE2 |
1.100 |
1.090 |
| CE2 |
HE2A |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 00E
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
104.3 |
120.0 |
| C |
CA |
NB |
107.7 |
109.5 |
| CA |
C |
OXT |
130.3 |
120.0 |
| C |
CA |
HAA |
110.1 |
109.5 |
| C |
CA |
HAB |
110.0 |
109.5 |
| O |
C |
OXT |
125.4 |
120.0 |
| CA |
NB |
CD1 |
110.7 |
111.1 |
| NB |
CA |
HAA |
110.1 |
109.5 |
| NB |
CA |
HAB |
110.1 |
109.5 |
| NB |
CD1 |
CE1 |
114.8 |
109.3 |
| NB |
CD1 |
HD1 |
107.8 |
109.5 |
| NB |
CD1 |
HD1A |
107.7 |
109.5 |
| OZ |
CE1 |
CD1 |
112.1 |
109.3 |
| OZ |
CE1 |
HE1 |
108.6 |
109.6 |
| OZ |
CE1 |
HE1A |
108.6 |
109.5 |
| CE1 |
CD1 |
HD1 |
107.7 |
109.5 |
| CE1 |
CD1 |
HD1A |
107.7 |
109.5 |
| CD1 |
CE1 |
HE1 |
108.6 |
109.5 |
| CD1 |
CE1 |
HE1A |
108.6 |
109.5 |
| CE2 |
CD2 |
HD2 |
106.4 |
109.5 |
| CE2 |
CD2 |
HD2A |
106.4 |
109.5 |
| CD2 |
CE2 |
HE2 |
108.3 |
109.6 |
| CD2 |
CE2 |
HE2A |
108.3 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| HAA |
CA |
HAB |
108.9 |
109.5 |
| HD1 |
CD1 |
HD1A |
111.1 |
109.5 |
| HD2 |
CD2 |
HD2A |
112.4 |
109.6 |
| HE1 |
CE1 |
HE1A |
110.3 |
109.5 |
| HE2 |
CE2 |
HE2A |
110.6 |
109.5 |
Torsion Angles for 00E
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
180.0 |
179.8 |
| C |
CA |
NB |
CD1 |
76.2 |
190.0 |
| NB |
CA |
C |
HAA |
240.0 |
240.0 |
| NB |
CA |
C |
HAB |
120.0 |
120.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| HAA |
CA |
C |
HAB |
240.0 |
240.0 |
| O |
C |
CA |
NB |
276.9 |
0.0 |
| CA |
C |
O |
OXT |
180.0 |
180.2 |
| O |
C |
CA |
HAA |
36.9 |
120.0 |
| O |
C |
CA |
HAB |
156.8 |
240.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.3 |
| NB |
CA |
C |
OXT |
96.9 |
180.3 |
| C |
CA |
NB |
HAA |
120.0 |
120.0 |
| C |
CA |
NB |
HAB |
240.0 |
240.0 |
| CA |
NB |
CD1 |
CE1 |
200.6 |
177.6 |
| CA |
NB |
CD1 |
HD1 |
320.6 |
297.6 |
| CA |
NB |
CD1 |
HD1A |
80.6 |
57.6 |
| HAA |
CA |
NB |
HAB |
120.0 |
120.0 |
| CD1 |
NB |
CA |
HAA |
316.3 |
70.0 |
| CD1 |
NB |
CA |
HAB |
196.2 |
310.0 |
| OZ |
CE1 |
CD1 |
NB |
52.4 |
56.9 |
| CE1 |
CD1 |
NB |
HD1 |
240.0 |
240.0 |
| CE1 |
CD1 |
NB |
HD1A |
120.0 |
119.9 |
| NB |
CD1 |
CE1 |
HE1 |
292.4 |
296.9 |
| NB |
CD1 |
CE1 |
HE1A |
172.4 |
176.8 |
| HD1 |
CD1 |
NB |
HD1A |
240.0 |
239.9 |
| NB |
CD1 |
CE1 |
OZ |
52.4 |
56.9 |
| OZ |
CE1 |
CD1 |
HD1 |
292.3 |
296.9 |
| OZ |
CE1 |
CD1 |
HD1A |
172.4 |
176.8 |
| CD1 |
CE1 |
OZ |
HE1 |
240.0 |
240.0 |
| CD1 |
CE1 |
OZ |
HE1A |
120.0 |
119.9 |
| HE1 |
CE1 |
OZ |
HE1A |
240.0 |
239.9 |
| NB |
CD1 |
CE1 |
HD1 |
120.0 |
120.0 |
| NB |
CD1 |
CE1 |
HD1A |
240.0 |
240.1 |
| OZ |
CE1 |
CD1 |
HE1 |
120.0 |
120.0 |
| OZ |
CE1 |
CD1 |
HE1A |
240.0 |
240.1 |
| HD1 |
CD1 |
CE1 |
HD1A |
120.0 |
120.1 |
| HE1 |
CE1 |
CD1 |
HE1A |
120.0 |
120.1 |
| CD2 |
NB |
CA |
HAA |
189.6 |
306.3 |
| CD2 |
NB |
CA |
HAB |
69.6 |
186.3 |
| CD2 |
NB |
CD1 |
CE1 |
324.6 |
301.4 |
| CD2 |
NB |
CD1 |
HD1 |
84.6 |
61.4 |
| CD2 |
NB |
CD1 |
HD1A |
204.6 |
181.5 |
| HD2 |
CD2 |
CE2 |
HD2A |
120.0 |
120.1 |
| HE2 |
CE2 |
CD2 |
HE2A |
240.0 |
120.1 |
| CE2 |
OZ |
CE1 |
HE1 |
59.6 |
61.3 |
| CE2 |
OZ |
CE1 |
HE1A |
179.6 |
181.4 |
| O |
C |
OXT |
CA |
180.0 |
180.2 |
| OXT |
C |
CA |
NB |
96.9 |
180.3 |
| OXT |
C |
CA |
HAA |
216.9 |
300.3 |
| OXT |
C |
CA |
HAB |
336.9 |
60.3 |
| C |
CA |
HAA |
NB |
241.5 |
240.0 |
| HAA |
CA |
C |
OXT |
216.9 |
300.3 |
| C |
CA |
HAA |
HAB |
120.7 |
120.0 |
| HAA |
CA |
NB |
CD1 |
316.3 |
70.0 |
| NB |
CA |
HAA |
HAB |
239.2 |
240.0 |
| C |
CA |
HAB |
NB |
118.5 |
120.0 |
| HAB |
CA |
C |
OXT |
336.9 |
60.3 |
| C |
CA |
HAB |
HAA |
239.3 |
240.0 |
| HAB |
CA |
NB |
CD1 |
196.2 |
310.0 |
| NB |
CA |
HAB |
HAA |
120.8 |
120.0 |
| NB |
CD1 |
HD1 |
CE1 |
235.6 |
240.1 |
| NB |
CD1 |
HD1 |
HD1A |
117.8 |
120.0 |
| CE1 |
CD1 |
HD1 |
HD1A |
242.2 |
239.9 |
| HD1 |
CD1 |
CE1 |
HE1 |
172.3 |
176.9 |
| HD1 |
CD1 |
CE1 |
HE1A |
52.4 |
56.8 |
| NB |
CD1 |
HD1A |
CE1 |
124.4 |
119.8 |
| NB |
CD1 |
HD1A |
HD1 |
242.2 |
239.9 |
| CE1 |
CD1 |
HD1A |
HD1 |
117.8 |
120.1 |
| HD1A |
CD1 |
CE1 |
HE1 |
52.4 |
56.8 |
| HD1A |
CD1 |
CE1 |
HE1A |
292.4 |
296.7 |
| CE2 |
CD2 |
HD2 |
HD2A |
244.0 |
239.9 |
| HD2 |
CD2 |
CE2 |
HE2 |
322.5 |
63.3 |
| HD2 |
CD2 |
CE2 |
HE2A |
82.5 |
303.1 |
| CE2 |
CD2 |
HD2A |
HD2 |
116.0 |
120.1 |
| HD2A |
CD2 |
CE2 |
HE2 |
202.5 |
303.1 |
| HD2A |
CD2 |
CE2 |
HE2A |
322.5 |
183.0 |
| OZ |
CE1 |
HE1 |
CD1 |
237.9 |
240.2 |
| OZ |
CE1 |
HE1 |
HE1A |
118.9 |
120.1 |
| HE1 |
CE1 |
CD1 |
HD1 |
172.3 |
176.9 |
| HE1 |
CE1 |
CD1 |
HD1A |
52.4 |
56.8 |
| CD1 |
CE1 |
HE1 |
HE1A |
241.0 |
239.9 |
| OZ |
CE1 |
HE1A |
CD1 |
122.1 |
119.8 |
| OZ |
CE1 |
HE1A |
HE1 |
241.1 |
239.9 |
| HE1A |
CE1 |
CD1 |
HD1 |
52.4 |
56.8 |
| HE1A |
CE1 |
CD1 |
HD1A |
292.4 |
296.7 |
| CD1 |
CE1 |
HE1A |
HE1 |
119.0 |
120.1 |
| HE2 |
CE2 |
CD2 |
HD2 |
322.5 |
63.3 |
| HE2 |
CE2 |
CD2 |
HD2A |
202.5 |
303.1 |
| CD2 |
CE2 |
HE2 |
HE2A |
118.6 |
239.9 |
| HE2A |
CE2 |
CD2 |
HD2 |
82.5 |
303.1 |
| HE2A |
CE2 |
CD2 |
HD2A |
322.5 |
183.0 |
| CD2 |
CE2 |
HE2A |
HE2 |
241.5 |
120.2 |