PDB Chemical Component 008

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 008

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
F7 C1 1.341 1.351
C1 C2 1.394 1.385
C1 C6 1.392 1.383
C2 C3 1.394 1.381
C2 H2 1.103 1.080
C3 C4 1.393 1.382
C3 H3 1.103 1.080
C4 C5 1.395 1.382
C4 H4 1.102 1.080
C5 C6 1.396 1.381
C5 H5 1.103 1.080
C6 C8 1.515 1.507
C8 C9 1.533 1.530
C8 H8C1 1.115 1.090
C8 H8C2 1.115 1.090
C9 N10 1.448 1.468
C9 C11 1.529 1.530
C9 H9 1.115 1.089
N10 H101 1.020 1.009
N10 H102 1.020 1.009
C11 C12 1.522 1.506
C11 H111 1.115 1.090
C11 H112 1.115 1.089
C12 O13 1.223 1.213
C12 N14 1.341 1.348
N14 C19 1.465 1.466
N14 C15 1.484 1.472
C19 C18 1.509 1.508
C19 H191 1.115 1.090
C19 H192 1.115 1.090
C18 C20 1.395 1.388
C18 C17 1.384 1.376
C20 C21 1.397 1.379
C20 H20 1.103 1.081
C21 C22 1.397 1.382
C21 H21 1.103 1.080
C22 C23 1.397 1.378
C22 H22 1.103 1.080
C17 C23 1.394 1.390
C17 C16 1.514 1.505
C23 H23 1.103 1.080
C16 C15 1.540 1.522
C16 H161 1.115 1.090
C16 H162 1.115 1.090
C15 C24 1.505 1.507
C15 H15 1.115 1.091
C24 O25 1.218 1.212
C24 N26 1.333 1.348
N26 H261 1.020 0.969
N26 H262 1.020 0.971

Bond Angles for 008

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
F7 C1 C2 119.1 120.0
F7 C1 C6 120.5 120.1
C2 C1 C6 120.4 120.0
C1 C2 C3 120.0 120.0
C1 C2 H2 120.0 120.0
C1 C6 C5 119.5 120.0
C1 C6 C8 120.4 120.0
C3 C2 H2 120.0 120.0
C2 C3 C4 119.7 120.0
C2 C3 H3 120.2 120.0
C4 C3 H3 120.1 120.0
C3 C4 C5 120.2 120.0
C3 C4 H4 119.9 120.0
C5 C4 H4 119.9 120.0
C4 C5 C6 120.1 120.0
C4 C5 H5 119.9 119.9
C6 C5 H5 120.0 120.0
C5 C6 C8 120.1 120.0
C6 C8 C9 110.5 109.5
C6 C8 H8C1 111.8 109.5
C6 C8 H8C2 111.8 109.5
C9 C8 H8C1 111.8 109.5
C9 C8 H8C2 111.8 109.5
C8 C9 N10 108.5 109.5
C8 C9 C11 112.0 109.5
C8 C9 H9 109.2 109.5
H8C1 C8 H8C2 98.6 109.4
N10 C9 C11 108.8 109.5
N10 C9 H9 109.2 109.5
C9 N10 H101 105.4 106.7
C9 N10 H102 105.3 106.7
C11 C9 H9 109.2 109.4
C9 C11 C12 114.6 109.5
C9 C11 H111 110.4 109.5
C9 C11 H112 110.3 109.6
H101 N10 H102 103.9 106.7
C12 C11 H111 110.3 109.4
C12 C11 H112 110.4 109.4
C11 C12 O13 120.8 120.0
C11 C12 N14 116.7 120.0
H111 C11 H112 99.9 109.5
O13 C12 N14 122.5 120.0
C12 N14 C19 124.7 121.4
C12 N14 C15 119.7 121.3
C19 N14 C15 115.5 117.3
N14 C19 C18 108.6 109.7
N14 C19 H191 112.5 109.4
N14 C19 H192 112.5 109.4
N14 C15 C16 114.2 108.2
N14 C15 C24 111.1 109.8
N14 C15 H15 107.7 109.5
C18 C19 H191 112.5 109.4
C18 C19 H192 112.5 109.4
C19 C18 C20 122.3 117.8
C19 C18 C17 116.9 122.3
H191 C19 H192 97.9 109.4
C20 C18 C17 120.8 119.9
C18 C20 C21 119.1 120.5
C18 C20 H20 120.4 119.8
C18 C17 C23 120.4 119.5
C18 C17 C16 118.0 122.9
C21 C20 H20 120.4 119.7
C20 C21 C22 120.0 119.7
C20 C21 H21 120.0 120.1
C22 C21 H21 120.0 120.1
C21 C22 C23 120.5 119.8
C21 C22 H22 119.8 120.1
C23 C22 H22 119.8 120.1
C22 C23 C17 119.1 120.6
C22 C23 H23 120.4 119.8
C23 C17 C16 121.6 117.6
C17 C23 H23 120.4 119.7
C17 C16 C15 112.0 110.9
C17 C16 H161 111.3 109.2
C17 C16 H162 111.3 109.3
C15 C16 H161 111.2 109.2
C15 C16 H162 111.3 109.0
C16 C15 C24 108.3 109.8
C16 C15 H15 107.7 109.7
H161 C16 H162 99.1 109.2
C24 C15 H15 107.7 109.7
C15 C24 O25 118.5 120.1
C15 C24 N26 120.0 120.0
O25 C24 N26 121.5 119.9
C24 N26 H261 120.1 120.0
C24 N26 H262 121.5 120.0
H261 N26 H262 118.5 120.0

Torsion Angles for 008

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 F7 C6 180.4 180.5
F7 C1 C2 C3 179.9 180.0
F7 C1 C2 H2 359.9 359.8
F7 C1 C6 C5 180.1 180.0
F7 C1 C6 C8 0.3 0.2
F7 C1 C2 C6 179.6 179.5
C2 C1 C6 C5 359.7 359.5
C2 C1 C6 C8 179.9 179.8
C3 C2 C1 H2 180.0 180.3
C1 C2 C3 C4 359.9 359.7
C1 C2 C3 H3 179.9 179.7
F7 C1 C6 C2 180.4 180.5
C6 C1 C2 C3 0.3 0.5
C6 C1 C2 H2 180.4 180.3
C4 C5 C6 C1 0.1 0.2
C1 C6 C5 H5 180.2 180.2
C5 C6 C1 C8 179.7 179.7
C1 C6 C8 C9 246.6 269.7
C1 C6 C8 H8C1 121.3 149.7
C1 C6 C8 H8C2 11.9 29.8
C3 C2 C1 C6 0.3 0.5
C1 C2 C3 H2 180.0 179.7
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 359.9 360.0
C2 C3 C4 H4 179.9 180.0
H2 C2 C1 C6 180.4 180.3
C1 C2 H2 C3 180.0 180.3
H2 C2 C3 C4 179.9 180.0
H2 C2 C3 H3 359.8 360.0
C4 C3 C2 H2 179.9 180.0
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 C6 0.1 0.0
C3 C4 C5 H5 180.1 180.0
H3 C3 C2 H2 359.8 360.0
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 179.9 180.0
H3 C3 C4 H4 359.9 0.1
C1 C6 C5 C4 0.1 0.2
C5 C4 C3 H3 179.9 180.0
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 C8 179.9 180.0
H4 C4 C3 H3 359.9 0.1
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 180.1 180.0
H4 C4 C5 H5 0.1 0.0
C1 C6 C5 C8 180.3 180.3
C6 C5 C4 H4 180.1 180.0
C4 C5 C6 H5 180.0 180.0
C5 C6 C8 C9 66.8 90.0
C5 C6 C8 H8C1 301.6 330.0
C5 C6 C8 H8C2 192.1 210.0
H5 C5 C4 H4 0.1 0.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 C8 359.9 359.9
C1 C6 C8 C5 179.7 179.7
C8 C6 C5 H5 359.9 359.9
C9 C8 C6 H8C1 125.3 120.0
C9 C8 C6 H8C2 234.7 240.0
C6 C8 C9 N10 67.8 60.0
C6 C8 C9 C11 187.9 180.0
C6 C8 C9 H9 308.9 300.0
H8C1 C8 C6 H8C2 109.5 119.9
C6 C8 C9 H8C1 234.7 240.0
C6 C8 C9 H8C2 125.3 120.0
H8C1 C8 C9 H8C2 250.6 240.0
N10 C9 C8 C11 239.9 240.0
N10 C9 C8 H9 118.9 120.0
C8 C9 N10 H101 224.2 60.0
C8 C9 N10 H102 114.7 173.8
C11 C9 C8 H9 239.0 240.1
C8 C9 C11 C12 70.7 180.0
C8 C9 C11 H111 305.4 299.9
C8 C9 C11 H112 196.0 60.0
C6 C8 H8C1 C9 124.6 120.0
C6 C8 H8C1 H8C2 242.3 240.0
C9 C8 H8C1 H8C2 117.7 120.0
H8C1 C8 C9 N10 193.1 180.0
H8C1 C8 C9 C11 313.2 300.0
H8C1 C8 C9 H9 74.2 60.0
C6 C8 H8C2 C9 235.4 240.0
C6 C8 H8C2 H8C1 117.7 120.0
C9 C8 H8C2 H8C1 242.3 240.0
H8C2 C8 C9 N10 302.5 300.0
H8C2 C8 C9 C11 62.6 60.0
H8C2 C8 C9 H9 183.6 180.0
N10 C9 C8 H8C1 193.1 180.0
N10 C9 C8 H8C2 302.5 300.0
C8 C9 N10 C11 122.1 120.0
C8 C9 N10 H9 241.1 240.0
C11 C9 N10 H9 119.0 120.0
N10 C9 C11 C12 190.7 300.0
N10 C9 C11 H111 65.4 59.9
N10 C9 C11 H112 316.0 180.0
H101 N10 C9 H102 109.5 246.2
C11 C9 C8 H8C1 313.2 300.0
C11 C9 C8 H8C2 62.6 60.0
C8 C9 C11 N10 240.0 240.0
C8 C9 C11 H9 121.0 120.0
N10 C9 C11 H9 241.0 240.0
C11 C9 N10 H101 102.1 300.0
C11 C9 N10 H102 352.7 53.8
C12 C11 C9 H111 125.3 240.1
C12 C11 C9 H112 234.7 120.0
C9 C11 C12 O13 2.1 0.1
C9 C11 C12 N14 184.8 179.9
H111 C11 C9 H112 109.5 239.9
H9 C9 C8 H8C1 74.2 60.0
H9 C9 C8 H8C2 183.6 180.0
C8 C9 H9 N10 118.5 120.0
C8 C9 H9 C11 237.3 240.0
N10 C9 H9 C11 118.8 120.0
H9 C9 N10 H101 343.1 180.0
H9 C9 N10 H102 233.6 293.8
H9 C9 C11 C12 309.7 60.0
H9 C9 C11 H111 184.5 180.0
H9 C9 C11 H112 75.0 300.0
H101 N10 C9 C11 102.1 300.0
H101 N10 C9 H9 343.1 180.0
C9 N10 H101 H102 249.5 113.8
H102 N10 C9 C11 352.7 53.8
H102 N10 C9 H9 233.6 293.8
C9 N10 H102 H101 110.5 246.2
C12 C11 C9 H9 309.7 60.0
C9 C11 C12 H111 234.7 120.0
C9 C11 C12 H112 125.3 239.9
H111 C11 C12 H112 250.5 119.9
O13 C12 C11 N14 177.3 180.1
C11 C12 N14 C19 356.2 353.9
C11 C12 N14 C15 174.7 173.5
H111 C11 C9 H9 184.5 180.0
C9 C11 H111 C12 127.6 240.0
C9 C11 H111 H112 243.8 120.1
C12 C11 H111 H112 116.2 240.1
H111 C11 C12 O13 127.3 240.1
H111 C11 C12 N14 310.0 59.9
H112 C11 C9 H9 75.0 300.0
C9 C11 H112 C12 232.4 120.0
C9 C11 H112 H111 116.2 239.9
C12 C11 H112 H111 243.8 119.9
H112 C11 C12 O13 236.8 120.1
H112 C11 C12 N14 59.5 300.0
O13 C12 C11 H111 127.3 240.1
O13 C12 C11 H112 236.8 120.1
C11 C12 O13 N14 182.9 179.9
O13 C12 N14 C19 179.0 173.8
O13 C12 N14 C15 357.5 353.4
N14 C12 C11 H111 310.0 59.9
N14 C12 C11 H112 59.5 300.0
C11 C12 N14 O13 177.3 180.1
C19 N14 C12 C15 181.5 180.4
C12 N14 C19 C18 234.5 135.5
C12 N14 C19 H191 109.2 255.6
C12 N14 C19 H192 359.7 15.5
C12 N14 C15 C16 164.8 244.3
C12 N14 C15 C24 287.6 4.2
C12 N14 C15 H15 45.3 124.7
C12 N14 C19 C15 178.5 179.6
C19 N14 C15 C16 343.4 63.9
C19 N14 C15 C24 106.2 183.8
C19 N14 C15 H15 223.9 304.3
C18 C19 N14 H191 125.3 239.9
C18 C19 N14 H192 234.7 120.1
N14 C19 C18 C20 131.8 191.6
N14 C19 C18 C17 312.0 11.7
H191 C19 N14 H192 109.5 240.1
C12 N14 C15 C19 181.4 180.4
C15 N14 C19 C18 56.0 315.9
C15 N14 C19 H191 290.7 75.9
C15 N14 C19 H192 181.2 195.8
C17 C16 C15 N14 329.0 312.7
N14 C15 C16 H161 203.7 192.3
N14 C15 C16 H162 94.3 73.0
C16 C15 N14 C24 237.2 240.1
C16 C15 N14 H15 119.5 119.6
C24 C15 N14 H15 242.3 239.5
N14 C15 C24 O25 132.9 108.3
N14 C15 C24 N26 313.2 288.3
C18 C19 N14 C15 56.0 315.9
N14 C19 C18 H191 234.7 120.1
N14 C19 C18 H192 125.3 239.9
H191 C19 C18 H192 250.5 119.9
C20 C18 C19 C17 179.8 179.9
C19 C18 C20 C21 179.9 180.5
C19 C18 C20 H20 359.9 0.4
C19 C18 C17 C23 180.4 179.2
C19 C18 C17 C16 359.9 358.4
H191 C19 N14 C15 290.7 75.9
N14 C19 H191 C18 123.1 239.8
N14 C19 H191 H192 241.6 119.9
C18 C19 H191 H192 118.4 240.1
H191 C19 C18 C20 257.1 71.5
H191 C19 C18 C17 77.3 251.6
H192 C19 N14 C15 181.2 195.8
N14 C19 H192 C18 236.9 120.2
N14 C19 H192 H191 118.4 240.1
C18 C19 H192 H191 241.6 119.9
H192 C19 C18 C20 6.5 311.6
H192 C19 C18 C17 186.8 131.7
C20 C18 C19 H191 257.1 71.5
C20 C18 C19 H192 6.5 311.6
C19 C18 C20 C17 180.2 180.1
C20 C18 C17 C23 0.6 359.3
C20 C18 C17 C16 180.1 178.5
C21 C20 C18 H20 180.0 180.1
C18 C20 C21 C22 0.3 0.1
C18 C20 C21 H21 180.3 180.0
C17 C18 C19 H191 77.3 251.6
C17 C18 C19 H192 186.8 131.7
C19 C18 C17 C20 179.8 179.9
C17 C18 C20 C21 359.6 0.4
C17 C18 C20 H20 179.6 180.3
C22 C23 C17 C18 359.3 0.5
C23 C17 C18 C16 180.5 180.8
C18 C17 C23 H23 179.2 180.5
C18 C17 C16 C15 40.2 20.1
C18 C17 C16 H161 165.5 140.6
C18 C17 C16 H162 275.0 259.9
C21 C20 C18 C17 359.6 0.4
C18 C20 C21 H20 180.0 179.9
C22 C21 C20 H21 180.0 180.1
C20 C21 C22 C23 359.6 359.7
C20 C21 C22 H22 179.5 179.7
H20 C20 C18 C17 179.6 180.3
C18 C20 H20 C21 180.0 180.1
H20 C20 C21 C22 180.3 180.2
H20 C20 C21 H21 0.3 0.1
C22 C21 C20 H20 180.3 180.2
C20 C21 C22 H21 180.0 179.9
C23 C22 C21 H22 180.0 179.9
C21 C22 C23 C17 0.7 0.1
C21 C22 C23 H23 180.7 180.0
H21 C21 C20 H20 0.3 0.1
C20 C21 H21 C22 180.0 180.1
H21 C21 C22 C23 179.5 179.7
H21 C21 C22 H22 359.5 359.8
C18 C17 C23 C22 359.3 0.5
C23 C22 C21 H21 179.5 179.7
C21 C22 C23 H22 180.0 180.1
C22 C23 C17 C16 179.8 181.2
C17 C23 C22 H23 180.0 180.1
H22 C22 C21 H21 359.5 359.8
C21 C22 H22 C23 180.0 179.9
H22 C22 C23 C17 180.7 180.0
H22 C22 C23 H23 0.7 359.9
C18 C17 C23 C16 179.5 179.2
C17 C23 C22 H22 180.7 180.0
C22 C23 C17 H23 180.0 179.9
C23 C17 C16 C15 219.7 199.3
C23 C17 C16 H161 345.0 319.8
C23 C17 C16 H162 94.4 79.1
N14 C15 C16 C17 329.0 312.7
C18 C17 C16 C23 180.5 180.8
C16 C17 C23 H23 359.8 1.3
C15 C16 C17 H161 234.7 239.6
C15 C16 C17 H162 125.3 120.2
C17 C16 C15 C24 204.7 192.8
C17 C16 C15 H15 88.5 72.2
H161 C16 C17 H162 250.5 240.6
H23 C23 C22 H22 0.7 359.9
C22 C23 H23 C17 180.0 180.1
H23 C23 C17 C16 359.8 1.3
N14 C15 C16 C24 124.3 119.9
N14 C15 C16 H15 240.5 240.6
C17 C16 C15 H161 125.3 120.4
C17 C16 C15 H162 234.7 239.7
H161 C16 C15 H162 109.4 119.2
C24 C15 C16 H15 116.2 120.6
C16 C15 C24 O25 259.1 227.3
C16 C15 C24 N26 79.4 47.2
C17 C16 H161 C15 234.3 238.6
C17 C16 H161 H162 117.2 119.4
C15 C16 H161 H162 242.9 240.8
H161 C16 C15 C24 79.4 72.4
H161 C16 C15 H15 323.2 311.7
C17 C16 H162 C15 125.7 121.3
C17 C16 H162 H161 242.8 240.6
C15 C16 H162 H161 117.1 119.3
H162 C16 C15 C24 330.0 313.1
H162 C16 C15 H15 213.8 192.5
N14 C15 C24 C16 233.8 241.1
N14 C15 C24 H15 117.7 120.4
C24 C15 C16 H161 79.4 72.4
C24 C15 C16 H162 330.0 313.1
C16 C15 C24 H15 243.8 239.3
O25 C24 C15 N26 179.7 180.0
C15 C24 N26 H261 180.0 180.0
C15 C24 N26 H262 359.7 360.0
N14 C15 H15 C16 123.6 118.7
N14 C15 H15 C24 240.1 239.4
H15 C15 C16 H161 323.2 311.7
H15 C15 C16 H162 213.8 192.5
C16 C15 H15 C24 116.6 120.7
H15 C15 C24 O25 15.3 347.9
H15 C15 C24 N26 195.6 167.9
O25 C24 C15 H15 15.3 347.9
C15 C24 O25 N26 180.3 180.0
O25 C24 N26 H261 0.3 0.0
O25 C24 N26 H262 180.0 180.0
N26 C24 C15 H15 195.6 167.9
C15 C24 N26 O25 179.7 180.0
H261 N26 C24 H262 180.3 180.0
C24 N26 H261 H262 179.7 180.0
C24 N26 H262 H261 180.3 180.0