PDB Chemical Component 006

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 006

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N2 C48 1.340 1.348
N2 C20 1.468 1.466
N2 HN2 1.000 0.970
C21 C20 1.529 1.531
C20 C28 1.542 1.529
C20 H20 1.100 1.090
C28 O20 1.439 1.429
O20 HO20 0.950 0.967
C22 C21 1.514 1.506
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C29 O21 1.228 1.212
C27 C22 1.396 1.383
C22 C23 1.401 1.383
C24 C23 1.395 1.383
C23 H23 1.080 1.080
C25 C24 1.396 1.381
C24 H24 1.079 1.080
C26 C25 1.397 1.382
C25 H25 1.079 1.080
C26 C27 1.394 1.382
C26 H26 1.080 1.080
C27 H27 1.080 1.081
C29 C28 1.520 1.507
C28 H28 1.100 1.090
N50 C29 1.350 1.348
N30 C31 1.465 1.465
N30 C55 1.350 1.348
N30 HN30 1.000 0.969
C35 O30 1.432 1.429
O30 HO30 0.950 0.967
C32 C31 1.476 1.514
C31 C35 1.542 1.543
C31 H31 1.100 1.090
C33 C32 1.396 1.385
C32 C36 1.375 1.382
C34 C33 1.399 1.381
C33 H33 1.080 1.080
C34 C38 1.401 1.382
C34 H34 1.080 1.080
C39 C35 1.536 1.543
C35 H35 1.100 1.090
C37 C36 1.394 1.385
C36 C39 1.511 1.514
C38 C37 1.399 1.382
C37 H37 1.080 1.080
C38 H38 1.080 1.080
C39 H39 1.100 1.091
C39 H39A 1.100 1.089
C40 C47 1.389 1.383
C40 C41 1.396 1.383
C40 H40 1.080 1.080
C48 O40 1.222 1.212
C41 C42 1.395 1.381
C41 H41 1.080 1.081
C45 O41 1.383 1.359
O41 C49 1.429 1.429
C42 C45 1.398 1.388
C42 C43 1.512 1.507
C43 H43 1.100 1.090
C43 H43A 1.100 1.090
C43 H43B 1.100 1.090
C46 C44 1.505 1.508
C44 H44 1.100 1.089
C44 H44A 1.100 1.089
C44 H44B 1.100 1.091
C46 C45 1.405 1.387
C47 C46 1.393 1.381
C47 H47 1.080 1.080
C49 C48 1.509 1.508
C49 H49 1.100 1.090
C49 H49A 1.099 1.089
S50 C50 1.750 1.840
C50 N50 1.467 1.476
C50 H50 1.100 1.090
C50 H50A 1.100 1.090
C54 N50 1.495 1.455
O50 C55 1.224 1.213
C51 S50 1.753 1.843
C53 C51 1.530 1.530
C51 C54 1.563 1.545
C51 C52 1.529 1.530
C52 H52 1.100 1.090
C52 H52A 1.100 1.090
C52 H52B 1.100 1.090
C53 H53 1.100 1.089
C53 H53A 1.100 1.090
C53 H53B 1.100 1.090
C55 C54 1.540 1.507
C54 H54 1.100 1.090

Bond Angles for 006

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C20 N2 C48 121.7 120.0
C48 N2 HN2 119.2 120.0
N2 C48 O40 124.1 120.0
C20 N2 HN2 119.1 120.0
N2 C20 C28 111.6 109.5
N2 C20 H20 110.4 109.4
C21 C20 C28 110.4 109.5
C21 C20 H20 111.6 109.4
C28 C20 H20 106.4 109.5
C20 C28 O20 109.7 109.5
C20 C28 H28 104.8 109.5
C28 O20 HO20 109.5 114.0
C22 C21 H21 108.9 109.5
C22 C21 H21A 109.0 109.5
H21 C21 H21A 110.0 109.5
C22 C23 H23 120.0 120.0
C24 C23 H23 120.0 120.0
C25 C24 H24 120.2 120.0
C26 C25 H25 119.8 119.9
C27 C26 H26 120.0 119.9
C26 C27 H27 120.2 120.0
C29 C28 H28 104.1 109.5
C31 N30 C55 131.1 120.0
C31 N30 HN30 114.4 120.0
N30 C31 C35 114.2 110.3
N30 C31 H31 105.0 110.2
C55 N30 HN30 114.4 120.0
N30 C55 O50 116.7 120.0
N30 C55 C54 124.8 120.0
C35 O30 HO30 109.5 114.0
C32 C31 C35 103.7 105.2
C32 C31 H31 115.3 110.4
C35 C31 H31 110.1 110.3
C31 C35 H35 108.8 110.8
C33 C32 C36 121.9 119.9
C32 C36 C39 112.1 109.8
C34 C33 H33 121.2 119.9
C38 C34 H34 119.7 120.0
C34 C38 C37 121.1 119.9
C34 C38 H38 119.4 120.1
C39 C35 H35 110.7 111.0
C37 C36 C39 126.7 130.4
C36 C39 H39 111.9 110.3
C36 C39 H39A 112.0 110.3
C38 C37 H37 121.2 119.9
H39 C39 H39A 106.9 110.3
C41 C40 C47 119.9 120.1
C47 C40 H40 120.0 120.0
C40 C47 C46 119.8 120.0
C40 C47 H47 120.1 120.0
C41 C40 H40 120.1 119.9
C40 C41 C42 120.7 120.1
C40 C41 H41 119.6 120.0
C42 C41 H41 119.7 120.0
C41 C42 C45 119.7 119.9
C41 C42 C43 118.8 120.1
C45 O41 C49 123.5 117.0
O41 C49 C48 110.1 109.4
O41 C49 H49 109.3 109.5
O41 C49 H49A 109.3 109.6
C43 C42 C45 121.5 120.0
C42 C43 H43 109.5 109.5
C42 C43 H43A 109.5 109.5
C42 C43 H43B 109.5 109.5
H43 C43 H43A 109.5 109.5
H43 C43 H43B 109.5 109.5
H43A C43 H43B 109.5 109.4
C46 C44 H44 109.5 109.5
C46 C44 H44A 109.5 109.5
C46 C44 H44B 109.5 109.4
H44 C44 H44A 109.5 109.5
H44 C44 H44B 109.5 109.5
H44A C44 H44B 109.5 109.5
H49 C49 H49A 109.7 109.5
S50 C50 H50 110.6 110.8
S50 C50 H50A 110.6 110.9
N50 C50 H50 110.6 110.7
N50 C50 H50A 110.6 110.8
H50 C50 H50A 108.4 110.7
O50 C55 C54 118.5 120.0
C53 C51 C54 115.5 111.0
C52 C51 C54 110.4 111.0
C51 C54 H54 102.4 108.8
C51 C52 H52 109.5 109.4
C51 C52 H52A 109.5 109.5
C51 C52 H52B 109.5 109.5
H52 C52 H52A 109.5 109.4
H52 C52 H52B 109.5 109.5
H52A C52 H52B 109.5 109.5
H53 C53 H53A 109.5 109.5
H53 C53 H53B 109.5 109.5
H53A C53 H53B 109.5 109.4
C55 C54 H54 101.3 108.6

Torsion Angles for 006

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C20 N2 C48 HN2 180.0 179.6
C48 N2 C20 C28 234.9 205.0
C48 N2 C20 H20 353.1 325.1
O41 C49 C48 N2 64.7 180.0
C48 N2 C20 HN2 180.0 180.4
C20 N2 C48 O40 0.3 359.9
C21 C20 N2 C28 239.5 240.0
C21 C20 N2 H20 121.3 119.9
C28 C20 N2 H20 241.8 239.9
N2 C20 C28 O20 106.7 297.2
N2 C20 C28 H28 226.5 57.3
C20 N2 HN2 C48 180.0 180.4
HN2 N2 C48 O40 180.3 180.3
HN2 N2 C20 C28 54.9 24.7
HN2 N2 C20 H20 173.1 144.7
C21 C20 N2 C48 114.4 85.0
C21 C20 N2 HN2 294.4 264.6
N2 C20 C21 C28 121.3 120.0
N2 C20 C21 H20 239.5 240.1
C28 C20 C21 H20 118.2 120.1
C21 C20 C28 O20 224.9 57.2
C21 C20 C28 H28 344.6 177.2
C28 C20 N2 C48 234.9 205.0
C28 C20 N2 HN2 54.9 24.7
N2 C20 C28 H20 120.5 120.0
C21 C20 C28 H20 238.7 240.0
C20 C28 O20 HO20 180.0 300.0
C29 C28 C20 H28 114.3 120.0
H20 C20 N2 C48 353.1 325.1
H20 C20 N2 HN2 173.1 144.7
N2 C20 H20 C28 238.7 240.0
C21 C20 H20 C28 120.5 120.1
H20 C20 C28 O20 346.2 177.2
H20 C20 C28 H28 106.0 297.2
O20 C28 C20 H20 346.2 177.2
C20 C28 O20 H28 115.6 120.0
C22 C21 C20 C28 157.0 175.0
C22 C21 C20 H20 38.8 54.9
H21 C21 C22 H21A 120.0 120.0
H21 C21 C20 C28 277.0 295.1
H21 C21 C20 H20 158.8 175.0
C22 C21 H21 H21A 240.6 240.0
H21A C21 C20 C28 37.0 55.0
H21A C21 C20 H20 278.8 294.9
C22 C21 H21A H21 119.3 120.1
C27 C22 C21 H21 341.2 149.7
C27 C22 C21 H21A 221.2 29.7
C27 C22 C23 H23 179.8 180.3
C23 C22 C21 H21 161.0 330.0
C23 C22 C21 H21A 41.0 210.0
C24 C23 C22 H23 180.0 180.1
C22 C23 C24 H23 180.0 179.9
C25 C24 C23 H23 180.1 180.0
H24 C24 C23 H23 0.1 0.1
C26 C25 C24 H24 180.0 180.0
H25 C25 C24 H24 0.0 359.9
C27 C26 C25 H25 179.9 179.7
H26 C26 C25 H25 359.9 360.0
H26 C26 C27 H27 0.0 359.8
H27 C27 C26 H26 0.0 359.8
C29 C28 C20 H20 220.3 57.2
C20 C28 C29 H28 245.3 240.0
C29 C28 O20 HO20 309.3 60.0
H28 C28 C20 H20 106.0 297.2
C20 C28 H28 O20 241.4 240.0
H28 C28 O20 HO20 64.4 180.0
N50 C29 C28 H28 346.0 41.4
C55 N30 C31 HN30 180.0 180.0
C31 N30 C55 O50 181.3 0.0
C31 N30 C55 C54 4.4 180.0
C32 C31 N30 C35 244.7 244.2
C32 C31 N30 H31 124.0 122.1
C35 C31 N30 H31 239.3 237.9
N30 C31 C35 H35 108.0 96.3
C31 N30 C55 HN30 180.0 180.0
C55 N30 C31 C35 282.7 205.0
C55 N30 C31 H31 43.4 327.1
O50 C55 N30 C54 176.9 180.0
N30 C55 C54 H54 50.5 38.3
C31 N30 HN30 C55 180.0 180.0
HN30 N30 C31 C35 102.7 25.0
HN30 N30 C31 H31 223.4 147.1
HN30 N30 C55 O50 1.2 180.0
HN30 N30 C55 C54 184.4 360.0
N30 C31 C35 O30 350.1 333.0
C32 C31 N30 C55 167.3 89.2
C32 C31 N30 HN30 347.4 269.2
N30 C31 C32 C35 121.9 118.9
N30 C31 C32 H31 242.4 237.9
C35 C31 C32 H31 120.4 119.0
C32 C31 C35 H35 226.4 215.2
C35 C31 N30 C55 282.7 205.0
C35 C31 N30 HN30 102.7 25.0
N30 C31 C35 H31 117.8 122.0
C31 C35 O30 HO30 180.0 180.0
C32 C31 C35 H31 236.2 241.0
C39 C35 C31 H35 120.3 118.4
H31 C31 N30 C55 43.4 327.1
H31 C31 N30 HN30 223.4 147.1
N30 C31 H31 C35 236.7 237.9
C32 C31 H31 C35 116.8 115.8
H31 C31 C35 H35 350.2 334.3
C33 C32 C31 C35 188.6 197.3
C33 C32 C31 H31 68.1 78.3
C33 C32 C36 C39 179.6 180.0
C36 C32 C31 C35 8.5 17.1
C36 C32 C31 H31 248.1 258.2
C37 C36 C32 C39 180.3 179.9
C32 C36 C39 H39 232.1 223.9
C32 C36 C39 H39A 112.1 101.7
C34 C33 C32 C36 0.0 0.1
H33 C33 C32 C36 180.0 180.0
C38 C34 C33 H33 180.2 180.1
C34 C38 C37 H37 180.2 180.1
H34 C34 C33 H33 0.2 0.0
H34 C34 C38 C37 179.7 180.0
H34 C34 C38 H38 359.7 0.0
C39 C35 O30 HO30 300.6 293.0
C39 C35 C31 H31 110.5 92.7
C31 C35 C39 H35 240.8 241.7
C32 C36 C39 C35 352.1 342.8
H35 C35 O30 HO30 60.9 56.6
H35 C35 C31 H31 350.2 334.3
C32 C36 C37 C39 179.6 180.1
C34 C38 C37 C36 0.2 360.0
C37 C36 C39 H39 51.7 44.0
C37 C36 C39 H39A 291.7 281.8
C36 C39 C35 H35 132.1 144.7
H39 C39 C36 H39A 120.0 122.1
C37 C38 C34 H34 179.7 180.0
C34 C38 C37 H38 180.0 180.0
C38 C37 C36 C39 180.3 180.0
H37 C37 C36 C39 0.3 359.9
H38 C38 C34 H34 359.7 0.0
C34 C38 H38 C37 180.0 180.0
H38 C38 C37 H37 0.2 0.1
H39 C39 C35 H35 252.1 263.6
C36 C39 H39 H39A 237.1 237.9
H39A C39 C35 H35 12.1 25.7
C36 C39 H39A H39 122.9 122.1
C41 C40 C47 H40 180.0 179.8
C47 C40 C41 C42 0.0 359.9
C47 C40 C41 H41 180.1 180.0
C47 C40 C41 H40 180.0 180.2
C41 C40 C47 C46 0.0 0.1
C41 C40 C47 H47 180.0 180.0
C42 C41 C40 H41 180.0 179.9
C40 C41 C42 C45 0.2 0.1
C40 C41 C42 C43 180.2 180.0
C41 C40 H40 C47 180.0 180.2
H40 C40 C47 C46 180.0 180.3
H40 C40 C47 H47 360.0 0.2
H40 C40 C41 C42 180.1 179.7
H40 C40 C41 H41 0.1 359.8
O40 C48 N2 HN2 180.3 180.3
C42 C41 C40 C47 0.0 359.9
C42 C41 C40 H40 180.1 179.7
C40 C41 C42 H41 180.0 180.1
C43 C42 C41 C45 180.0 179.9
C41 C42 C43 H43 90.0 90.0
C41 C42 C43 H43A 210.0 210.0
C41 C42 C43 H43B 330.0 330.0
H41 C41 C40 C47 180.1 180.0
H41 C41 C40 H40 0.1 359.8
C40 C41 H41 C42 180.0 179.9
H41 C41 C42 C45 180.1 180.0
H41 C41 C42 C43 0.2 359.9
C41 C42 C45 O41 180.7 179.9
C45 O41 C49 C48 150.5 180.0
C45 O41 C49 H49 270.5 300.0
C45 O41 C49 H49A 30.5 60.0
H49 C49 O41 H49A 240.0 240.0
C45 C42 C41 H41 180.1 180.0
C41 C42 C45 C43 180.0 179.9
C42 C45 O41 C49 254.2 90.0
C45 C42 C43 H43 270.0 270.0
C45 C42 C43 H43A 30.0 30.0
C45 C42 C43 H43B 150.0 150.0
C43 C42 C41 H41 0.2 359.9
C41 C42 C43 C45 180.0 180.1
H43 C43 C42 H43A 240.0 240.0
H43 C43 C42 H43B 120.0 120.0
H43A C43 C42 H43B 240.0 240.0
H43 C43 C42 C45 270.0 270.0
C42 C43 H43 H43A 120.0 120.0
C42 C43 H43 H43B 240.0 240.0
H43A C43 H43 H43B 120.0 120.0
H43A C43 C42 C45 30.0 30.0
C42 C43 H43A H43 240.0 240.0
C42 C43 H43A H43B 120.0 120.0
H43 C43 H43A H43B 240.0 240.0
H43B C43 C42 C45 150.0 150.0
C42 C43 H43B H43 120.0 120.0
C42 C43 H43B H43A 240.0 240.0
H43 C43 H43B H43A 120.0 120.0
C40 C47 C46 C44 179.8 180.0
H44 C44 C46 H44A 240.0 239.9
H44 C44 C46 H44B 120.0 119.9
H44A C44 C46 H44B 240.0 240.0
C46 C44 H44 H44A 120.0 120.0
C46 C44 H44 H44B 240.0 240.1
H44A C44 H44 H44B 120.0 120.0
C46 C44 H44A H44 240.0 240.0
C46 C44 H44A H44B 120.0 120.0
H44 C44 H44A H44B 240.0 240.0
C46 C44 H44B H44 120.0 120.0
C46 C44 H44B H44A 240.0 240.0
H44 C44 H44B H44A 120.0 120.1
C40 C47 C46 C45 359.7 359.9
C46 C45 O41 C49 75.3 270.0
C45 C46 C44 H44 90.1 90.0
C45 C46 C44 H44A 210.1 210.0
C45 C46 C44 H44B 330.1 330.0
C46 C47 C40 H40 180.0 180.3
C40 C47 C46 H47 180.0 179.9
C47 C46 C44 H44 269.9 269.9
C47 C46 C44 H44A 29.9 30.0
C47 C46 C44 H44B 150.0 150.0
H47 C47 C40 H40 360.0 0.2
C40 C47 H47 C46 180.0 180.1
C49 C48 N2 HN2 0.1 0.3
O41 C49 C48 H49 120.0 120.0
O41 C49 C48 H49A 240.0 239.9
O41 C49 H49 C48 239.5 240.0
O41 C49 H49 H49A 119.7 120.1
O41 C49 H49A C48 120.5 120.0
O41 C49 H49A H49 240.3 240.0
N50 C50 S50 H50 240.0 118.3
N50 C50 S50 H50A 120.0 241.6
H50 C50 S50 H50A 240.0 123.4
S50 C50 N50 H50 120.0 241.7
S50 C50 N50 H50A 240.0 118.5
H50 C50 N50 H50A 120.0 236.8
S50 C50 H50 H50A 121.3 236.5
N50 C50 H50 H50A 238.7 123.3
S50 C50 H50A H50 238.6 123.4
N50 C50 H50A H50 121.3 236.8
N30 C55 C54 N50 168.0 156.4
C54 N50 C50 H50 264.5 93.5
C54 N50 C50 H50A 144.5 216.7
O50 C55 N30 HN30 1.2 180.0
N30 C55 O50 C54 182.9 180.0
O50 C55 C54 H54 233.7 218.2
C51 S50 C50 H50 98.9 275.2
C51 S50 C50 H50A 219.0 151.8
C52 C51 C53 C54 233.0 236.0
C53 C51 C54 H54 236.0 262.0
C53 C51 C52 H52 63.7 297.4
C53 C51 C52 H52A 183.7 57.4
C53 C51 C52 H52B 303.7 177.4
N30 C55 C54 C51 299.6 280.0
O50 C55 C54 C51 122.8 100.0
C54 C51 C52 H52 294.0 173.4
C54 C51 C52 H52A 54.0 293.3
C54 C51 C52 H52B 174.0 53.4
C55 C54 C51 H54 110.2 118.1
C53 C51 C52 C54 129.7 124.0
C52 C51 C54 H54 3.5 26.0
H52 C52 C51 H52A 240.0 240.1
H52 C52 C51 H52B 120.0 120.0
H52A C52 C51 H52B 240.0 240.0
H52 C52 C51 C54 294.0 173.4
C51 C52 H52 H52A 120.0 120.0
C51 C52 H52 H52B 240.0 240.0
H52A C52 H52 H52B 120.0 120.0
H52A C52 C51 C54 54.0 293.3
C51 C52 H52A H52 240.0 240.1
C51 C52 H52A H52B 120.0 120.0
H52 C52 H52A H52B 240.0 240.0
H52B C52 C51 C54 174.0 53.4
C51 C52 H52B H52 120.0 120.0
C51 C52 H52B H52A 240.0 240.0
H52 C52 H52B H52A 120.0 120.0
H53 C53 C51 C54 63.8 306.6
H53A C53 H53 H53B 120.0 120.0
H53A C53 C51 C54 183.8 66.6
H53 C53 H53A H53B 240.0 240.0
H53B C53 C51 C54 303.8 186.6
H53 C53 H53B H53A 120.0 120.0
C54 C55 N30 HN30 184.4 360.0
N30 C55 C54 O50 176.8 180.0
C51 C54 C55 H54 249.1 241.8