# data_ALA_LEO2 # _chem_comp.id ALA_LEO2 _chem_comp.name "L-ALALINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 87.077 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LEO2 N N N -1 1 N N N 2.281 26.213 12.804 1.396 1.170 -0.129 1 ALA_LEO2 CA CA C 0 1 N N S 1.169 26.942 13.411 0.711 -0.098 -0.413 2 ALA_LEO2 C C C 0 1 N N N 1.539 28.344 13.874 -0.749 0.032 -0.065 3 ALA_LEO2 O O O 0 1 N N N 2.709 28.647 14.114 -1.180 1.082 0.379 4 ALA_LEO2 CB CB C 0 1 N N N 0.601 26.143 14.574 1.338 -1.215 0.423 5 ALA_LEO2 OXT OXT O -1 1 N Y N 0.523 29.194 13.997 -1.501 -0.915 -0.227 6 ALA_LEO2 H H H 0 1 N N N 2.083 26.047 11.838 2.378 1.109 -0.355 7 ALA_LEO2 HA HA H 0 1 N N N 0.410 27.066 12.624 0.812 -0.336 -1.472 8 ALA_LEO2 HB1 1HB H 0 1 N N N 0.464 25.095 14.268 0.830 -2.155 0.213 9 ALA_LEO2 HB2 2HB H 0 1 N N N 1.297 26.188 15.424 2.395 -1.308 0.171 10 ALA_LEO2 HB3 3HB H 0 1 N N N -0.369 26.568 14.871 1.237 -0.976 1.482 11 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LEO2 N CA SING N N 1 ALA_LEO2 N H SING N N 2 ALA_LEO2 CA C SING N N 3 ALA_LEO2 CA CB SING N N 4 ALA_LEO2 CA HA SING N N 5 ALA_LEO2 C O DOUB N N 6 ALA_LEO2 C OXT SING N N 7 ALA_LEO2 CB HB1 SING N N 8 ALA_LEO2 CB HB2 SING N N 9 ALA_LEO2 CB HB3 SING N N 10 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])C ALA_LEO2 InChI InChI 1.01 InChI=1/C3H6NO2/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/q-1/p-1/t2-/m0/s1 ALA_LEO2 SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH-])C([O-])=O ALA_LEO2 SMILES CACTVS 3.341 C[CH]([NH-])C([O-])=O ALA_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)[O-])[NH-] ALA_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidylpropanoate ALA_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidylpropanoate # # data_ALA_LEO2H # _chem_comp.id ALA_LEO2H _chem_comp.name "L-ALALINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 88.085 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LEO2H N N N -1 1 N N N 2.281 26.213 12.804 -1.526 1.015 0.428 1 ALA_LEO2H CA CA C 0 1 N N S 1.169 26.942 13.411 -0.727 -0.218 0.434 2 ALA_LEO2H C C C 0 1 N N N 1.539 28.344 13.874 0.690 0.100 0.034 3 ALA_LEO2H O O O 0 1 N N N 2.709 28.647 14.114 0.934 1.120 -0.566 4 ALA_LEO2H CB CB C 0 1 N N N 0.601 26.143 14.574 -1.325 -1.218 -0.558 5 ALA_LEO2H OXT OXT O 0 1 N Y N 0.523 29.194 13.997 1.682 -0.749 0.345 6 ALA_LEO2H H H H 0 1 N N N 2.083 26.047 11.838 -1.536 1.435 -0.489 7 ALA_LEO2H HA HA H 0 1 N N N 0.410 27.066 12.624 -0.734 -0.650 1.435 8 ALA_LEO2H HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.318 -0.785 -1.558 9 ALA_LEO2H HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -0.732 -2.133 -0.553 10 ALA_LEO2H HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.350 -1.448 -0.268 11 ALA_LEO2H HXT HXT H 0 1 N Y N 0.849 30.037 14.290 2.575 -0.502 0.067 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LEO2H N CA SING N N 1 ALA_LEO2H N H SING N N 2 ALA_LEO2H CA C SING N N 3 ALA_LEO2H CA CB SING N N 4 ALA_LEO2H CA HA SING N N 5 ALA_LEO2H C O DOUB N N 6 ALA_LEO2H C OXT SING N N 7 ALA_LEO2H CB HB1 SING N N 8 ALA_LEO2H CB HB2 SING N N 9 ALA_LEO2H CB HB3 SING N N 10 ALA_LEO2H OXT HXT SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])C ALA_LEO2H InChI InChI 1.01 InChI=1/C3H6NO2/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/q-1/t2-/m0/s1 ALA_LEO2H SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH-])C(O)=O ALA_LEO2H SMILES CACTVS 3.341 C[CH]([NH-])C(O)=O ALA_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)O)[NH-] ALA_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxyethyl]azanide ALA_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-1-oxo-propan-2-yl]azanide # # data_ALA_LFOH # _chem_comp.id ALA_LFOH _chem_comp.name "L-ALALINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 89.093 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LFOH N N N 0 1 N N N 2.281 26.213 12.804 -1.555 0.996 0.180 1 ALA_LFOH CA CA C 0 1 N N S 1.169 26.942 13.411 -0.715 -0.184 0.426 2 ALA_LFOH C C C 0 1 N N N 1.539 28.344 13.874 0.713 0.131 0.062 3 ALA_LFOH O O O 0 1 N N N 2.709 28.647 14.114 1.001 1.226 -0.359 4 ALA_LFOH CB CB C 0 1 N N N 0.601 26.143 14.574 -1.214 -1.352 -0.428 5 ALA_LFOH OXT OXT O 0 1 N Y N 0.523 29.194 13.997 1.664 -0.805 0.206 6 ALA_LFOH HA HA H 0 1 N N N 0.410 27.066 12.624 -0.770 -0.455 1.481 7 ALA_LFOH HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.159 -1.080 -1.482 8 ALA_LFOH HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -0.591 -2.227 -0.245 9 ALA_LFOH HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.247 -1.579 -0.164 10 ALA_LFOH HXT HXT H 0 1 N Y N 0.849 30.037 14.290 2.565 -0.557 -0.040 11 ALA_LFOH H1 H1 H 0 1 N N N 2.083 26.047 11.838 -1.471 1.306 -0.776 12 ALA_LFOH H2 H2 H 0 1 N N N 3.118 26.755 12.884 -2.518 0.810 0.417 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LFOH N CA SING N N 1 ALA_LFOH CA C SING N N 2 ALA_LFOH CA CB SING N N 3 ALA_LFOH CA HA SING N N 4 ALA_LFOH C O DOUB N N 5 ALA_LFOH C OXT SING N N 6 ALA_LFOH CB HB1 SING N N 7 ALA_LFOH CB HB2 SING N N 8 ALA_LFOH CB HB3 SING N N 9 ALA_LFOH OXT HXT SING N N 10 ALA_LFOH H1 N SING N N 11 ALA_LFOH H2 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)C ALA_LFOH InChI InChI 1.01 InChI=1/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1 ALA_LFOH SMILES_CANONICAL CACTVS 3.341 C[C@H](N)C(O)=O ALA_LFOH SMILES CACTVS 3.341 C[CH](N)C(O)=O ALA_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)O)N ALA_LFOH SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-alanine ALA_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-aminopropanoic acid" # # data_ALA_LFZW # _chem_comp.id ALA_LFZW _chem_comp.name "L-ALALINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 89.093 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LFZW N N N 1 1 N N N 2.281 26.213 12.804 -1.442 1.041 0.134 1 ALA_LFZW CA CA C 0 1 N N S 1.169 26.942 13.411 -0.674 -0.179 0.418 2 ALA_LFZW C C C 0 1 N N N 1.539 28.344 13.874 0.774 0.046 0.064 3 ALA_LFZW O O O 0 1 N N N 2.709 28.647 14.114 1.133 1.122 -0.383 4 ALA_LFZW CB CB C 0 1 N N N 0.601 26.143 14.574 -1.228 -1.336 -0.414 5 ALA_LFZW OXT OXT O -1 1 N Y N 0.523 29.194 13.997 1.587 -0.849 0.225 6 ALA_LFZW HA HA H 0 1 N N N 0.410 27.066 12.624 -0.755 -0.421 1.477 7 ALA_LFZW HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.147 -1.094 -1.474 8 ALA_LFZW HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -0.658 -2.241 -0.204 9 ALA_LFZW HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.275 -1.499 -0.159 10 ALA_LFZW H1 H1 H 0 1 N N N 2.083 26.047 11.838 -1.076 1.804 0.683 11 ALA_LFZW H2 H2 H 0 1 N N N 3.118 26.755 12.884 -1.366 1.265 -0.847 12 ALA_LFZW H3 H3 H 0 1 N N N 2.403 25.339 13.275 -2.411 0.891 0.371 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LFZW N CA SING N N 1 ALA_LFZW CA C SING N N 2 ALA_LFZW CA CB SING N N 3 ALA_LFZW CA HA SING N N 4 ALA_LFZW C O DOUB N N 5 ALA_LFZW C OXT SING N N 6 ALA_LFZW CB HB1 SING N N 7 ALA_LFZW CB HB2 SING N N 8 ALA_LFZW CB HB3 SING N N 9 ALA_LFZW H1 N SING N N 10 ALA_LFZW H2 N SING N N 11 ALA_LFZW H3 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])C ALA_LFZW InChI InChI 1.01 InChI=1/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1 ALA_LFZW SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH3+])C([O-])=O ALA_LFZW SMILES CACTVS 3.341 C[CH]([NH3+])C([O-])=O ALA_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)[O-])[NH3+] ALA_LFZW SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammoniopropanoate ALA_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumylpropanoate # # data_ALA_LL # _chem_comp.id ALA_LL _chem_comp.name "L-ALALINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 71.078 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LL N N N -1 1 N N N 2.281 26.213 12.804 -0.573 1.402 -0.061 1 ALA_LL CA CA C 0 1 N N S 1.169 26.942 13.411 -0.437 0.005 0.374 2 ALA_LL C C C -1 1 N N N 1.539 28.344 13.874 0.814 -0.587 -0.222 3 ALA_LL O O O 0 1 N N N 2.709 28.647 14.114 1.890 -0.098 0.026 4 ALA_LL CB CB C 0 1 N N N 0.601 26.143 14.574 -1.654 -0.795 -0.096 5 ALA_LL H H H 0 1 N N N 2.083 26.047 11.838 -0.632 1.464 -1.066 6 ALA_LL HA HA H 0 1 N N N 0.410 27.066 12.624 -0.375 -0.032 1.461 7 ALA_LL HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.716 -0.757 -1.183 8 ALA_LL HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -1.553 -1.831 0.227 9 ALA_LL HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.559 -0.367 0.335 10 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LL N CA SING N N 1 ALA_LL N H SING N N 2 ALA_LL CA C SING N N 3 ALA_LL CA CB SING N N 4 ALA_LL CA HA SING N N 5 ALA_LL C O DOUB N N 6 ALA_LL CB HB1 SING N N 7 ALA_LL CB HB2 SING N N 8 ALA_LL CB HB3 SING N N 9 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])C ALA_LL InChI InChI 1.01 InChI=1/C3H5NO/c1-3(4)2-5/h3-4H,1H3/q-2/t3-/m0/s1 ALA_LL SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH-])[C-]=O ALA_LL SMILES CACTVS 3.341 C[CH]([NH-])[C-]=O ALA_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]([C-]=O)[NH-] ALA_LL SMILES "OpenEye OEToolkits" 1.5.0 CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-methyl-2-oxoethan-2-idyl]azanide ALA_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-oxopropan-2-yl]azanide # # data_ALA_LSN3 # _chem_comp.id ALA_LSN3 _chem_comp.name "L-ALALINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 73.094 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LSN3 N N N 1 1 N N N 2.281 26.213 12.804 1.568 0.779 0.082 1 ALA_LSN3 CA CA C 0 1 N N S 1.169 26.942 13.411 0.404 0.002 -0.364 2 ALA_LSN3 C C C -1 1 N N N 1.539 28.344 13.874 -0.851 0.600 0.216 3 ALA_LSN3 O O O 0 1 N N N 2.709 28.647 14.114 -1.925 0.106 -0.030 4 ALA_LSN3 CB CB C 0 1 N N N 0.601 26.143 14.574 0.546 -1.446 0.111 5 ALA_LSN3 HA HA H 0 1 N N N 0.410 27.066 12.624 0.348 0.023 -1.452 6 ALA_LSN3 HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -0.318 -2.023 -0.219 7 ALA_LSN3 HB2 2HB H 0 1 N N N 1.297 26.188 15.424 1.454 -1.878 -0.308 8 ALA_LSN3 HB3 3HB H 0 1 N N N -0.369 26.568 14.871 0.602 -1.467 1.199 9 ALA_LSN3 H1 H1 H 0 1 N N N 2.083 26.047 11.838 1.620 0.760 1.089 10 ALA_LSN3 H2 H2 H 0 1 N N N 3.118 26.755 12.884 2.409 0.379 -0.307 11 ALA_LSN3 H3 H3 H 0 1 N N N 2.403 25.339 13.275 1.475 1.734 -0.231 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LSN3 N CA SING N N 1 ALA_LSN3 CA C SING N N 2 ALA_LSN3 CA CB SING N N 3 ALA_LSN3 CA HA SING N N 4 ALA_LSN3 C O DOUB N N 5 ALA_LSN3 CB HB1 SING N N 6 ALA_LSN3 CB HB2 SING N N 7 ALA_LSN3 CB HB3 SING N N 8 ALA_LSN3 H1 N SING N N 9 ALA_LSN3 H2 N SING N N 10 ALA_LSN3 H3 N SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])C ALA_LSN3 InChI InChI 1.01 InChI=1/C3H6NO/c1-3(4)2-5/h3H,4H2,1H3/q-1/p+1/t3-/m0/s1 ALA_LSN3 SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH3+])[C-]=O ALA_LSN3 SMILES CACTVS 3.341 C[CH]([NH3+])[C-]=O ALA_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]([C-]=O)[NH3+] ALA_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-1-oxopropan-1-ide ALA_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-oxopropan-2-yl]azanium # # data_ARG_LEO2 # _chem_comp.id ARG_LEO2 _chem_comp.name "L-ARGININE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2 N N N -1 1 N N N 69.812 14.685 89.810 2.380 1.750 -0.358 1 ARG_LEO2 CA CA C 0 1 N N S 70.052 14.573 91.280 2.309 0.480 0.377 2 ARG_LEO2 C C C 0 1 N N N 71.542 14.389 91.604 3.544 -0.335 0.093 3 ARG_LEO2 O O O 0 1 N N N 72.354 14.342 90.659 3.774 -1.341 0.742 4 ARG_LEO2 CB CB C 0 1 N N N 69.227 13.419 91.854 1.070 -0.299 -0.069 5 ARG_LEO2 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.189 0.472 0.332 6 ARG_LEO2 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.428 -0.307 -0.114 7 ARG_LEO2 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.634 0.431 0.270 8 ARG_LEO2 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.869 -0.075 -0.027 9 ARG_LEO2 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -3.976 -1.240 -0.665 10 ARG_LEO2 NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 -4.965 0.596 0.322 11 ARG_LEO2 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 4.314 0.012 -0.787 12 ARG_LEO2 H H H 0 1 N N N 68.828 14.710 89.633 2.440 1.589 -1.352 13 ARG_LEO2 HA HA H 0 1 N N N 69.733 15.515 91.750 2.245 0.682 1.446 14 ARG_LEO2 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.090 -0.425 -1.151 15 ARG_LEO2 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.065 -1.278 0.410 16 ARG_LEO2 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.209 0.597 1.415 17 ARG_LEO2 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.184 1.451 -0.147 18 ARG_LEO2 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.408 -0.433 -1.196 19 ARG_LEO2 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.433 -1.286 0.365 20 ARG_LEO2 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.556 1.279 0.735 21 ARG_LEO2 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.178 -1.728 -0.919 22 ARG_LEO2 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.852 -1.599 -0.875 23 ARG_LEO2 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.887 1.444 0.787 24 ARG_LEO2 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.842 0.237 0.112 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2 N CA SING N N 1 ARG_LEO2 N H SING N N 2 ARG_LEO2 CA C SING N N 3 ARG_LEO2 CA CB SING N N 4 ARG_LEO2 CA HA SING N N 5 ARG_LEO2 C O DOUB N N 6 ARG_LEO2 C OXT SING N N 7 ARG_LEO2 CB CG SING N N 8 ARG_LEO2 CB HB2 SING N N 9 ARG_LEO2 CB HB3 SING N N 10 ARG_LEO2 CG CD SING N N 11 ARG_LEO2 CG HG2 SING N N 12 ARG_LEO2 CG HG3 SING N N 13 ARG_LEO2 CD NE SING N N 14 ARG_LEO2 CD HD2 SING N N 15 ARG_LEO2 CD HD3 SING N N 16 ARG_LEO2 NE CZ SING N N 17 ARG_LEO2 NE HE SING N N 18 ARG_LEO2 CZ NH1 SING N N 19 ARG_LEO2 CZ NH2 DOUB N N 20 ARG_LEO2 NH1 HH11 SING N N 21 ARG_LEO2 NH1 HH12 SING N N 22 ARG_LEO2 NH2 HH21 SING N N 23 ARG_LEO2 NH2 HH22 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(\N)=[NH2+] ARG_LEO2 InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1 ARG_LEO2 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C([O-])=O ARG_LEO2 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C([O-])=O ARG_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)[O-])[NH-])CNC(=[NH2+])N ARG_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)[O-])[NH-])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-azanidylpentanoate ARG_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-[(amino-azaniumylidene-methyl)amino]-2-azanidyl-pentanoate # # data_ARG_LEO2_DHH12 # _chem_comp.id ARG_LEO2_DHH12 _chem_comp.name "L-ARGININE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.185 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2_DHH12 N N N -1 1 N N N 69.812 14.685 89.810 2.362 1.749 -0.350 1 ARG_LEO2_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.285 0.476 0.379 2 ARG_LEO2_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.514 -0.346 0.086 3 ARG_LEO2_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 3.738 -1.357 0.729 4 ARG_LEO2_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.039 -0.292 -0.067 5 ARG_LEO2_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.213 0.485 0.343 6 ARG_LEO2_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.459 -0.283 -0.103 7 ARG_LEO2_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.658 0.461 0.290 8 ARG_LEO2_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.905 -0.037 -0.007 9 ARG_LEO2_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.972 0.625 0.342 10 ARG_LEO2_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.026 -1.235 -0.672 11 ARG_LEO2_DHH12 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 4.283 0.000 -0.794 12 ARG_LEO2_DHH12 H H H 0 1 N N N 68.828 14.710 89.633 2.417 1.593 -1.345 13 ARG_LEO2_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.227 0.673 1.449 14 ARG_LEO2_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.054 -0.412 -1.150 15 ARG_LEO2_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.029 -1.274 0.407 16 ARG_LEO2_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.228 0.605 1.426 17 ARG_LEO2_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.203 1.467 -0.131 18 ARG_LEO2_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.444 -0.403 -1.186 19 ARG_LEO2_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.469 -1.265 0.371 20 ARG_LEO2_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.573 1.306 0.759 21 ARG_LEO2_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -5.851 0.273 0.133 22 ARG_LEO2_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -3.232 -1.727 -0.931 23 ARG_LEO2_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -4.905 -1.586 -0.881 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2_DHH12 N CA SING N N 1 ARG_LEO2_DHH12 N H SING N N 2 ARG_LEO2_DHH12 CA C SING N N 3 ARG_LEO2_DHH12 CA CB SING N N 4 ARG_LEO2_DHH12 CA HA SING N N 5 ARG_LEO2_DHH12 C O DOUB N N 6 ARG_LEO2_DHH12 C OXT SING N N 7 ARG_LEO2_DHH12 CB CG SING N N 8 ARG_LEO2_DHH12 CB HB2 SING N N 9 ARG_LEO2_DHH12 CB HB3 SING N N 10 ARG_LEO2_DHH12 CG CD SING N N 11 ARG_LEO2_DHH12 CG HG2 SING N N 12 ARG_LEO2_DHH12 CG HG3 SING N N 13 ARG_LEO2_DHH12 CD NE SING N N 14 ARG_LEO2_DHH12 CD HD2 SING N N 15 ARG_LEO2_DHH12 CD HD3 SING N N 16 ARG_LEO2_DHH12 NE CZ SING N N 17 ARG_LEO2_DHH12 NE HE SING N N 18 ARG_LEO2_DHH12 CZ NH1 DOUB N N 19 ARG_LEO2_DHH12 CZ NH2 SING N N 20 ARG_LEO2_DHH12 NH1 HH11 SING N N 21 ARG_LEO2_DHH12 NH2 HH21 SING N N 22 ARG_LEO2_DHH12 NH2 HH22 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2_DHH12 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(=[N@H])N ARG_LEO2_DHH12 InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p-1/t4-/m0/s1 ARG_LEO2_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C([O-])=O ARG_LEO2_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C([O-])=O ARG_LEO2_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)[O-])[NH-] ARG_LEO2_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-5-carbamimidamidopentanoate ARG_LEO2_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-5-carbamimidamido-pentanoate # # data_ARG_LEO2_DHH22 # _chem_comp.id ARG_LEO2_DHH22 _chem_comp.name "L-ARGININE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.185 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2_DHH22 N N N -1 1 N N N 69.812 14.685 89.810 2.349 1.750 -0.344 1 ARG_LEO2_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.282 0.475 0.382 2 ARG_LEO2_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.522 -0.332 0.097 3 ARG_LEO2_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.382 0.114 -0.643 4 ARG_LEO2_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.048 -0.307 -0.074 5 ARG_LEO2_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.216 0.456 0.327 6 ARG_LEO2_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.450 -0.326 -0.129 7 ARG_LEO2_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.660 0.404 0.256 8 ARG_LEO2_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.899 -0.109 -0.051 9 ARG_LEO2_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -5.035 0.576 0.310 10 ARG_LEO2_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -3.996 -1.244 -0.683 11 ARG_LEO2_DHH22 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 3.665 -1.431 0.606 12 ARG_LEO2_DHH22 H H H 0 1 N N N 68.828 14.710 89.633 2.414 1.597 -1.339 13 ARG_LEO2_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.213 0.670 1.452 14 ARG_LEO2_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.073 -0.424 -1.158 15 ARG_LEO2_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.046 -1.289 0.398 16 ARG_LEO2_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.241 0.573 1.411 17 ARG_LEO2_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.214 1.438 -0.145 18 ARG_LEO2_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.425 -0.444 -1.212 19 ARG_LEO2_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.452 -1.309 0.344 20 ARG_LEO2_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.588 1.248 0.727 21 ARG_LEO2_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.963 1.421 0.781 22 ARG_LEO2_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -5.908 0.214 0.094 23 ARG_LEO2_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -3.194 -1.728 -0.938 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2_DHH22 N CA SING N N 1 ARG_LEO2_DHH22 N H SING N N 2 ARG_LEO2_DHH22 CA C SING N N 3 ARG_LEO2_DHH22 CA CB SING N N 4 ARG_LEO2_DHH22 CA HA SING N N 5 ARG_LEO2_DHH22 C O DOUB N N 6 ARG_LEO2_DHH22 C OXT SING N N 7 ARG_LEO2_DHH22 CB CG SING N N 8 ARG_LEO2_DHH22 CB HB2 SING N N 9 ARG_LEO2_DHH22 CB HB3 SING N N 10 ARG_LEO2_DHH22 CG CD SING N N 11 ARG_LEO2_DHH22 CG HG2 SING N N 12 ARG_LEO2_DHH22 CG HG3 SING N N 13 ARG_LEO2_DHH22 CD NE SING N N 14 ARG_LEO2_DHH22 CD HD2 SING N N 15 ARG_LEO2_DHH22 CD HD3 SING N N 16 ARG_LEO2_DHH22 NE CZ SING N N 17 ARG_LEO2_DHH22 NE HE SING N N 18 ARG_LEO2_DHH22 CZ NH1 SING N N 19 ARG_LEO2_DHH22 CZ NH2 DOUB N N 20 ARG_LEO2_DHH22 NH1 HH11 SING N N 21 ARG_LEO2_DHH22 NH1 HH12 SING N N 22 ARG_LEO2_DHH22 NH2 HH21 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2_DHH22 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(=[N@H])N ARG_LEO2_DHH22 InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p-1/t4-/m0/s1 ARG_LEO2_DHH22 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C([O-])=O ARG_LEO2_DHH22 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C([O-])=O ARG_LEO2_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H](C(=O)[O-])[NH-] ARG_LEO2_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-5-carbamimidamidopentanoate ARG_LEO2_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-5-carbamimidamido-pentanoate # # data_ARG_LEO2H # _chem_comp.id ARG_LEO2H _chem_comp.name "L-ARGININE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H N N N -1 1 N N N 69.812 14.685 89.810 2.330 1.807 -0.309 1 ARG_LEO2H CA CA C 0 1 N N S 70.052 14.573 91.280 2.276 0.507 0.373 2 ARG_LEO2H C C C 0 1 N N N 71.542 14.389 91.604 3.518 -0.282 0.047 3 ARG_LEO2H O O O 0 1 N N N 72.354 14.342 90.659 4.176 0.000 -0.926 4 ARG_LEO2H CB CB C 0 1 N N N 69.227 13.419 91.854 1.043 -0.266 -0.098 5 ARG_LEO2H CG CG C 0 1 N N N 67.722 13.607 91.686 -0.222 0.475 0.342 6 ARG_LEO2H CD CD C 0 1 N N N 66.952 12.344 92.045 -1.455 -0.298 -0.129 7 ARG_LEO2H NE NE N 0 1 N N N 67.307 11.224 91.178 -2.666 0.410 0.292 8 ARG_LEO2H CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.898 -0.096 -0.019 9 ARG_LEO2H NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -3.997 -1.234 -0.704 10 ARG_LEO2H NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 -4.999 0.549 0.364 11 ARG_LEO2H OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.894 -1.298 0.840 12 ARG_LEO2H H H H 0 1 N N N 68.828 14.710 89.633 2.385 1.689 -1.310 13 ARG_LEO2H HA HA H 0 1 N N N 69.733 15.515 91.750 2.217 0.664 1.450 14 ARG_LEO2H HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.057 -0.345 -1.185 15 ARG_LEO2H HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.050 -1.264 0.339 16 ARG_LEO2H HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.236 0.554 1.429 17 ARG_LEO2H HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.229 1.473 -0.096 18 ARG_LEO2H HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.441 -0.378 -1.216 19 ARG_LEO2H HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.448 -1.296 0.308 20 ARG_LEO2H HE HE H 0 1 N N N 67.872 11.418 90.376 -2.594 1.239 0.791 21 ARG_LEO2H HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.195 -1.703 -0.983 22 ARG_LEO2H HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.871 -1.593 -0.925 23 ARG_LEO2H HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.927 1.377 0.864 24 ARG_LEO2H HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.873 0.189 0.144 25 ARG_LEO2H HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.698 -1.775 0.590 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H N CA SING N N 1 ARG_LEO2H N H SING N N 2 ARG_LEO2H CA C SING N N 3 ARG_LEO2H CA CB SING N N 4 ARG_LEO2H CA HA SING N N 5 ARG_LEO2H C O DOUB N N 6 ARG_LEO2H C OXT SING N N 7 ARG_LEO2H CB CG SING N N 8 ARG_LEO2H CB HB2 SING N N 9 ARG_LEO2H CB HB3 SING N N 10 ARG_LEO2H CG CD SING N N 11 ARG_LEO2H CG HG2 SING N N 12 ARG_LEO2H CG HG3 SING N N 13 ARG_LEO2H CD NE SING N N 14 ARG_LEO2H CD HD2 SING N N 15 ARG_LEO2H CD HD3 SING N N 16 ARG_LEO2H NE CZ SING N N 17 ARG_LEO2H NE HE SING N N 18 ARG_LEO2H CZ NH1 SING N N 19 ARG_LEO2H CZ NH2 DOUB N N 20 ARG_LEO2H NH1 HH11 SING N N 21 ARG_LEO2H NH1 HH12 SING N N 22 ARG_LEO2H NH2 HH21 SING N N 23 ARG_LEO2H NH2 HH22 SING N N 24 ARG_LEO2H OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCN\C(=[NH2+])N ARG_LEO2H InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p+1/t4-/m0/s1 ARG_LEO2H SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C(O)=O ARG_LEO2H SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C(O)=O ARG_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)[NH-])CNC(=[NH2+])N ARG_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)[NH-])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-{[amino(iminio)methyl]amino}-1-carboxybutyl]azanide ARG_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-hydroxy-1-oxo-pentan-2-yl]azanide # # data_ARG_LEO2H_DHH12 # _chem_comp.id ARG_LEO2H_DHH12 _chem_comp.name "L-ARGININE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H_DHH12 N N N -1 1 N N N 69.812 14.685 89.810 2.308 1.813 -0.264 1 ARG_LEO2H_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.259 0.495 0.384 2 ARG_LEO2H_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.506 -0.279 0.042 3 ARG_LEO2H_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.164 0.032 -0.922 4 ARG_LEO2H_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.031 -0.271 -0.110 5 ARG_LEO2H_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.239 0.451 0.345 6 ARG_LEO2H_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.467 -0.315 -0.150 7 ARG_LEO2H_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.683 0.377 0.287 8 ARG_LEO2H_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.918 -0.130 -0.042 9 ARG_LEO2H_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.007 -1.226 -0.742 10 ARG_LEO2H_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.058 0.519 0.367 11 ARG_LEO2H_DHH12 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.884 -1.314 0.809 12 ARG_LEO2H_DHH12 H H H 0 1 N N N 68.828 14.710 89.633 2.366 1.721 -1.267 13 ARG_LEO2H_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.196 0.624 1.465 14 ARG_LEO2H_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.048 -0.322 -1.199 15 ARG_LEO2H_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.042 -1.280 0.301 16 ARG_LEO2H_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.257 0.503 1.434 17 ARG_LEO2H_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.250 1.461 -0.066 18 ARG_LEO2H_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.449 -0.366 -1.238 19 ARG_LEO2H_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.456 -1.324 0.262 20 ARG_LEO2H_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.616 1.192 0.808 21 ARG_LEO2H_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.878 -1.584 -0.975 22 ARG_LEO2H_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.992 1.334 0.888 23 ARG_LEO2H_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.930 0.161 0.135 24 ARG_LEO2H_DHH12 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.691 -1.780 0.549 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H_DHH12 N CA SING N N 1 ARG_LEO2H_DHH12 N H SING N N 2 ARG_LEO2H_DHH12 CA C SING N N 3 ARG_LEO2H_DHH12 CA CB SING N N 4 ARG_LEO2H_DHH12 CA HA SING N N 5 ARG_LEO2H_DHH12 C O DOUB N N 6 ARG_LEO2H_DHH12 C OXT SING N N 7 ARG_LEO2H_DHH12 CB CG SING N N 8 ARG_LEO2H_DHH12 CB HB2 SING N N 9 ARG_LEO2H_DHH12 CB HB3 SING N N 10 ARG_LEO2H_DHH12 CG CD SING N N 11 ARG_LEO2H_DHH12 CG HG2 SING N N 12 ARG_LEO2H_DHH12 CG HG3 SING N N 13 ARG_LEO2H_DHH12 CD NE SING N N 14 ARG_LEO2H_DHH12 CD HD2 SING N N 15 ARG_LEO2H_DHH12 CD HD3 SING N N 16 ARG_LEO2H_DHH12 NE CZ SING N N 17 ARG_LEO2H_DHH12 NE HE SING N N 18 ARG_LEO2H_DHH12 CZ NH1 DOUB N N 19 ARG_LEO2H_DHH12 CZ NH2 SING N N 20 ARG_LEO2H_DHH12 NH1 HH11 SING N N 21 ARG_LEO2H_DHH12 NH2 HH21 SING N N 22 ARG_LEO2H_DHH12 NH2 HH22 SING N N 23 ARG_LEO2H_DHH12 OXT HXT SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H_DHH12 SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCNC(=[N@H])N ARG_LEO2H_DHH12 InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1 ARG_LEO2H_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C(O)=O ARG_LEO2H_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C(O)=O ARG_LEO2H_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)O)[NH-] ARG_LEO2H_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-carbamimidamido-1-carboxybutyl]azanide ARG_LEO2H_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-hydroxy-1-oxo-pentan-2-yl]azanide # # data_ARG_LEO2H_DHH22 # _chem_comp.id ARG_LEO2H_DHH22 _chem_comp.name "L-ARGININE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H_DHH22 N N N -1 1 N N N 69.812 14.685 89.810 2.300 1.803 -0.327 1 ARG_LEO2H_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.244 0.510 0.368 2 ARG_LEO2H_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.483 -0.286 0.047 3 ARG_LEO2H_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.139 -0.016 -0.930 4 ARG_LEO2H_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.007 -0.263 -0.094 5 ARG_LEO2H_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.254 0.485 0.342 6 ARG_LEO2H_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.491 -0.288 -0.120 7 ARG_LEO2H_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.699 0.428 0.297 8 ARG_LEO2H_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.939 -0.080 -0.008 9 ARG_LEO2H_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.046 -1.260 -0.704 10 ARG_LEO2H_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.014 0.558 0.363 11 ARG_LEO2H_DHH22 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.857 -1.297 0.848 12 ARG_LEO2H_DHH22 H H H 0 1 N N N 68.828 14.710 89.633 2.353 1.675 -1.326 13 ARG_LEO2H_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.188 0.677 1.443 14 ARG_LEO2H_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.020 -0.354 -1.180 15 ARG_LEO2H_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.013 -1.258 0.353 16 ARG_LEO2H_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.266 0.575 1.428 17 ARG_LEO2H_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.259 1.479 -0.105 18 ARG_LEO2H_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.479 -0.378 -1.206 19 ARG_LEO2H_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.486 -1.282 0.327 20 ARG_LEO2H_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.623 1.261 0.789 21 ARG_LEO2H_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.247 -1.735 -0.981 22 ARG_LEO2H_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.922 -1.618 -0.920 23 ARG_LEO2H_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.938 1.391 0.855 24 ARG_LEO2H_DHH22 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.659 -1.778 0.602 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H_DHH22 N CA SING N N 1 ARG_LEO2H_DHH22 N H SING N N 2 ARG_LEO2H_DHH22 CA C SING N N 3 ARG_LEO2H_DHH22 CA CB SING N N 4 ARG_LEO2H_DHH22 CA HA SING N N 5 ARG_LEO2H_DHH22 C O DOUB N N 6 ARG_LEO2H_DHH22 C OXT SING N N 7 ARG_LEO2H_DHH22 CB CG SING N N 8 ARG_LEO2H_DHH22 CB HB2 SING N N 9 ARG_LEO2H_DHH22 CB HB3 SING N N 10 ARG_LEO2H_DHH22 CG CD SING N N 11 ARG_LEO2H_DHH22 CG HG2 SING N N 12 ARG_LEO2H_DHH22 CG HG3 SING N N 13 ARG_LEO2H_DHH22 CD NE SING N N 14 ARG_LEO2H_DHH22 CD HD2 SING N N 15 ARG_LEO2H_DHH22 CD HD3 SING N N 16 ARG_LEO2H_DHH22 NE CZ SING N N 17 ARG_LEO2H_DHH22 NE HE SING N N 18 ARG_LEO2H_DHH22 CZ NH1 SING N N 19 ARG_LEO2H_DHH22 CZ NH2 DOUB N N 20 ARG_LEO2H_DHH22 NH1 HH11 SING N N 21 ARG_LEO2H_DHH22 NH1 HH12 SING N N 22 ARG_LEO2H_DHH22 NH2 HH21 SING N N 23 ARG_LEO2H_DHH22 OXT HXT SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H_DHH22 SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCNC(=[N@H])N ARG_LEO2H_DHH22 InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1 ARG_LEO2H_DHH22 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C(O)=O ARG_LEO2H_DHH22 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C(O)=O ARG_LEO2H_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H](C(=O)O)[NH-] ARG_LEO2H_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-carbamimidamido-1-carboxybutyl]azanide ARG_LEO2H_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-hydroxy-1-oxo-pentan-2-yl]azanide # # data_ARG_LEO2H_RNH1 # _chem_comp.id ARG_LEO2H_RNH1 _chem_comp.name "L-ARGININE-C-TERMINAL PROTONATED FRAGMENT/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H_RNH1 N N N -1 1 N N N 69.812 14.685 89.810 2.330 1.807 -0.309 1 ARG_LEO2H_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 2.276 0.507 0.373 2 ARG_LEO2H_RNH1 C C C 0 1 N N N 71.542 14.389 91.604 3.518 -0.282 0.047 3 ARG_LEO2H_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 4.176 0.000 -0.926 4 ARG_LEO2H_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 1.043 -0.266 -0.098 5 ARG_LEO2H_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.222 0.475 0.342 6 ARG_LEO2H_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.455 -0.298 -0.129 7 ARG_LEO2H_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.666 0.410 0.292 8 ARG_LEO2H_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.898 -0.096 -0.019 9 ARG_LEO2H_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 -3.997 -1.234 -0.704 10 ARG_LEO2H_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.999 0.549 0.364 11 ARG_LEO2H_RNH1 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.894 -1.298 0.840 12 ARG_LEO2H_RNH1 H H H 0 1 N N N 68.828 14.710 89.633 2.385 1.689 -1.310 13 ARG_LEO2H_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 2.217 0.664 1.450 14 ARG_LEO2H_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.057 -0.345 -1.185 15 ARG_LEO2H_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.050 -1.264 0.339 16 ARG_LEO2H_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.236 0.554 1.429 17 ARG_LEO2H_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.229 1.473 -0.096 18 ARG_LEO2H_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.441 -0.378 -1.216 19 ARG_LEO2H_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.448 -1.296 0.308 20 ARG_LEO2H_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.594 1.239 0.791 21 ARG_LEO2H_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.871 -1.593 -0.925 22 ARG_LEO2H_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -3.195 -1.703 -0.983 23 ARG_LEO2H_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.927 1.377 0.864 24 ARG_LEO2H_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.873 0.189 0.144 25 ARG_LEO2H_RNH1 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.698 -1.775 0.590 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H_RNH1 N CA SING N N 1 ARG_LEO2H_RNH1 N H SING N N 2 ARG_LEO2H_RNH1 CA C SING N N 3 ARG_LEO2H_RNH1 CA CB SING N N 4 ARG_LEO2H_RNH1 CA HA SING N N 5 ARG_LEO2H_RNH1 C O DOUB N N 6 ARG_LEO2H_RNH1 C OXT SING N N 7 ARG_LEO2H_RNH1 CB CG SING N N 8 ARG_LEO2H_RNH1 CB HB2 SING N N 9 ARG_LEO2H_RNH1 CB HB3 SING N N 10 ARG_LEO2H_RNH1 CG CD SING N N 11 ARG_LEO2H_RNH1 CG HG2 SING N N 12 ARG_LEO2H_RNH1 CG HG3 SING N N 13 ARG_LEO2H_RNH1 CD NE SING N N 14 ARG_LEO2H_RNH1 CD HD2 SING N N 15 ARG_LEO2H_RNH1 CD HD3 SING N N 16 ARG_LEO2H_RNH1 NE CZ SING N N 17 ARG_LEO2H_RNH1 NE HE SING N N 18 ARG_LEO2H_RNH1 CZ NH1 DOUB N N 19 ARG_LEO2H_RNH1 CZ NH2 SING N N 20 ARG_LEO2H_RNH1 NH1 HH11 SING N N 21 ARG_LEO2H_RNH1 NH1 HH12 SING N N 22 ARG_LEO2H_RNH1 NH2 HH21 SING N N 23 ARG_LEO2H_RNH1 NH2 HH22 SING N N 24 ARG_LEO2H_RNH1 OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H_RNH1 SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCN\C(=[NH2+])N ARG_LEO2H_RNH1 InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p+1/t4-/m0/s1 ARG_LEO2H_RNH1 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C(O)=O ARG_LEO2H_RNH1 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C(O)=O ARG_LEO2H_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)[NH-])CNC(=[NH2+])N ARG_LEO2H_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)[NH-])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-{[amino(iminio)methyl]amino}-1-carboxybutyl]azanide ARG_LEO2H_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-hydroxy-1-oxo-pentan-2-yl]azanide # # data_ARG_LEO2_RNH1 # _chem_comp.id ARG_LEO2_RNH1 _chem_comp.name "L-ARGININE-C-TERMINAL DEPROTONATED FRAGMENT/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2_RNH1 N N N -1 1 N N N 69.812 14.685 89.810 2.380 1.750 -0.358 1 ARG_LEO2_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 2.309 0.480 0.377 2 ARG_LEO2_RNH1 C C C 0 1 N N N 71.542 14.389 91.604 3.544 -0.335 0.093 3 ARG_LEO2_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 3.774 -1.341 0.742 4 ARG_LEO2_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 1.070 -0.299 -0.069 5 ARG_LEO2_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.189 0.472 0.332 6 ARG_LEO2_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.428 -0.307 -0.114 7 ARG_LEO2_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.634 0.431 0.270 8 ARG_LEO2_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.869 -0.075 -0.027 9 ARG_LEO2_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 -3.976 -1.240 -0.665 10 ARG_LEO2_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.965 0.596 0.322 11 ARG_LEO2_RNH1 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 4.314 0.012 -0.787 12 ARG_LEO2_RNH1 H H H 0 1 N N N 68.828 14.710 89.633 2.440 1.589 -1.352 13 ARG_LEO2_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 2.245 0.682 1.446 14 ARG_LEO2_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.090 -0.425 -1.151 15 ARG_LEO2_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.065 -1.278 0.410 16 ARG_LEO2_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.209 0.597 1.415 17 ARG_LEO2_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.184 1.451 -0.147 18 ARG_LEO2_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.408 -0.433 -1.196 19 ARG_LEO2_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.433 -1.286 0.365 20 ARG_LEO2_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.556 1.279 0.735 21 ARG_LEO2_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.852 -1.599 -0.875 22 ARG_LEO2_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -3.178 -1.728 -0.919 23 ARG_LEO2_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.887 1.444 0.787 24 ARG_LEO2_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.842 0.237 0.112 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2_RNH1 N CA SING N N 1 ARG_LEO2_RNH1 N H SING N N 2 ARG_LEO2_RNH1 CA C SING N N 3 ARG_LEO2_RNH1 CA CB SING N N 4 ARG_LEO2_RNH1 CA HA SING N N 5 ARG_LEO2_RNH1 C O DOUB N N 6 ARG_LEO2_RNH1 C OXT SING N N 7 ARG_LEO2_RNH1 CB CG SING N N 8 ARG_LEO2_RNH1 CB HB2 SING N N 9 ARG_LEO2_RNH1 CB HB3 SING N N 10 ARG_LEO2_RNH1 CG CD SING N N 11 ARG_LEO2_RNH1 CG HG2 SING N N 12 ARG_LEO2_RNH1 CG HG3 SING N N 13 ARG_LEO2_RNH1 CD NE SING N N 14 ARG_LEO2_RNH1 CD HD2 SING N N 15 ARG_LEO2_RNH1 CD HD3 SING N N 16 ARG_LEO2_RNH1 NE CZ SING N N 17 ARG_LEO2_RNH1 NE HE SING N N 18 ARG_LEO2_RNH1 CZ NH1 DOUB N N 19 ARG_LEO2_RNH1 CZ NH2 SING N N 20 ARG_LEO2_RNH1 NH1 HH11 SING N N 21 ARG_LEO2_RNH1 NH1 HH12 SING N N 22 ARG_LEO2_RNH1 NH2 HH21 SING N N 23 ARG_LEO2_RNH1 NH2 HH22 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2_RNH1 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(\N)=[NH2+] ARG_LEO2_RNH1 InChI InChI 1.01 InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1 ARG_LEO2_RNH1 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C([O-])=O ARG_LEO2_RNH1 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C([O-])=O ARG_LEO2_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)[O-])[NH-])CNC(=[NH2+])N ARG_LEO2_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)[O-])[NH-])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-azanidylpentanoate ARG_LEO2_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-[(amino-azaniumylidene-methyl)amino]-2-azanidyl-pentanoate # # data_ARG_LFOH # _chem_comp.id ARG_LFOH _chem_comp.name "L-ARGININE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH N N N 0 1 N N N 69.812 14.685 89.810 2.325 1.789 -0.306 1 ARG_LFOH CA CA C 0 1 N N S 70.052 14.573 91.280 2.268 0.488 0.374 2 ARG_LFOH C C C 0 1 N N N 71.542 14.389 91.604 3.509 -0.303 0.047 3 ARG_LFOH O O O 0 1 N N N 72.354 14.342 90.659 4.167 -0.021 -0.926 4 ARG_LFOH CB CB C 0 1 N N N 69.227 13.419 91.854 1.033 -0.281 -0.098 5 ARG_LFOH CG CG C 0 1 N N N 67.722 13.607 91.686 -0.230 0.461 0.343 6 ARG_LFOH CD CD C 0 1 N N N 66.952 12.344 92.045 -1.465 -0.309 -0.130 7 ARG_LFOH NE NE N 0 1 N N N 67.307 11.224 91.178 -2.674 0.402 0.293 8 ARG_LFOH CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.907 -0.101 -0.019 9 ARG_LFOH NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.009 -1.238 -0.706 10 ARG_LFOH NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 -5.007 0.545 0.365 11 ARG_LFOH OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.882 -1.322 0.838 12 ARG_LFOH HA HA H 0 1 N N N 69.733 15.515 91.750 2.210 0.643 1.451 13 ARG_LFOH HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.048 -0.359 -1.186 14 ARG_LFOH HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.039 -1.280 0.338 15 ARG_LFOH HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.244 0.539 1.430 16 ARG_LFOH HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.235 1.460 -0.093 17 ARG_LFOH HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.450 -0.387 -1.217 18 ARG_LFOH HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.459 -1.308 0.306 19 ARG_LFOH HE HE H 0 1 N N N 67.872 11.418 90.376 -2.600 1.230 0.794 20 ARG_LFOH HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.208 -1.708 -0.986 21 ARG_LFOH HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.883 -1.594 -0.927 22 ARG_LFOH HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.933 1.372 0.866 23 ARG_LFOH HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.881 0.188 0.145 24 ARG_LFOH HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.685 -1.800 0.588 25 ARG_LFOH H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.380 1.672 -1.307 26 ARG_LFOH H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.535 2.364 -0.052 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH N CA SING N N 1 ARG_LFOH CA C SING N N 2 ARG_LFOH CA CB SING N N 3 ARG_LFOH CA HA SING N N 4 ARG_LFOH C O DOUB N N 5 ARG_LFOH C OXT SING N N 6 ARG_LFOH CB CG SING N N 7 ARG_LFOH CB HB2 SING N N 8 ARG_LFOH CB HB3 SING N N 9 ARG_LFOH CG CD SING N N 10 ARG_LFOH CG HG2 SING N N 11 ARG_LFOH CG HG3 SING N N 12 ARG_LFOH CD NE SING N N 13 ARG_LFOH CD HD2 SING N N 14 ARG_LFOH CD HD3 SING N N 15 ARG_LFOH NE CZ SING N N 16 ARG_LFOH NE HE SING N N 17 ARG_LFOH CZ NH1 SING N N 18 ARG_LFOH CZ NH2 DOUB N N 19 ARG_LFOH NH1 HH11 SING N N 20 ARG_LFOH NH1 HH12 SING N N 21 ARG_LFOH NH2 HH21 SING N N 22 ARG_LFOH NH2 HH22 SING N N 23 ARG_LFOH OXT HXT SING N N 24 ARG_LFOH H1 N SING N N 25 ARG_LFOH H2 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)CCCN\C(=[NH2+])N ARG_LFOH InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1 ARG_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH SMILES CACTVS 3.341 N[CH](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)N)CNC(=[NH2+])N ARG_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)N)CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 amino{[(4S)-4-amino-4-carboxybutyl]amino}methaniminium ARG_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [amino-[[(4S)-4-amino-5-hydroxy-5-oxo-pentyl]amino]methylidene]azanium # # data_ARG_LFOH_DHH12 # _chem_comp.id ARG_LFOH_DHH12 _chem_comp.name "L-ARGININE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH_DHH12 N N N 0 1 N N N 69.812 14.685 89.810 2.303 1.794 -0.264 1 ARG_LFOH_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.251 0.477 0.384 2 ARG_LFOH_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.496 -0.300 0.042 3 ARG_LFOH_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.155 0.009 -0.922 4 ARG_LFOH_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.021 -0.287 -0.110 5 ARG_LFOH_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.247 0.438 0.345 6 ARG_LFOH_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.477 -0.326 -0.149 7 ARG_LFOH_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.691 0.368 0.287 8 ARG_LFOH_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.927 -0.136 -0.042 9 ARG_LFOH_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.018 -1.231 -0.742 10 ARG_LFOH_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.066 0.516 0.367 11 ARG_LFOH_DHH12 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.873 -1.336 0.809 12 ARG_LFOH_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.188 0.606 1.465 13 ARG_LFOH_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.039 -0.338 -1.199 14 ARG_LFOH_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.030 -1.296 0.301 15 ARG_LFOH_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.265 0.490 1.434 16 ARG_LFOH_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.256 1.447 -0.067 17 ARG_LFOH_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.459 -0.377 -1.238 18 ARG_LFOH_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.467 -1.335 0.262 19 ARG_LFOH_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.623 1.184 0.808 20 ARG_LFOH_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.891 -1.587 -0.974 21 ARG_LFOH_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.998 1.331 0.888 22 ARG_LFOH_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.938 0.160 0.135 23 ARG_LFOH_DHH12 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.678 -1.804 0.549 24 ARG_LFOH_DHH12 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.361 1.702 -1.267 25 ARG_LFOH_DHH12 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.510 2.359 0.002 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH_DHH12 N CA SING N N 1 ARG_LFOH_DHH12 CA C SING N N 2 ARG_LFOH_DHH12 CA CB SING N N 3 ARG_LFOH_DHH12 CA HA SING N N 4 ARG_LFOH_DHH12 C O DOUB N N 5 ARG_LFOH_DHH12 C OXT SING N N 6 ARG_LFOH_DHH12 CB CG SING N N 7 ARG_LFOH_DHH12 CB HB2 SING N N 8 ARG_LFOH_DHH12 CB HB3 SING N N 9 ARG_LFOH_DHH12 CG CD SING N N 10 ARG_LFOH_DHH12 CG HG2 SING N N 11 ARG_LFOH_DHH12 CG HG3 SING N N 12 ARG_LFOH_DHH12 CD NE SING N N 13 ARG_LFOH_DHH12 CD HD2 SING N N 14 ARG_LFOH_DHH12 CD HD3 SING N N 15 ARG_LFOH_DHH12 NE CZ SING N N 16 ARG_LFOH_DHH12 NE HE SING N N 17 ARG_LFOH_DHH12 CZ NH1 DOUB N N 18 ARG_LFOH_DHH12 CZ NH2 SING N N 19 ARG_LFOH_DHH12 NH1 HH11 SING N N 20 ARG_LFOH_DHH12 NH2 HH21 SING N N 21 ARG_LFOH_DHH12 NH2 HH22 SING N N 22 ARG_LFOH_DHH12 OXT HXT SING N N 23 ARG_LFOH_DHH12 H1 N SING N N 24 ARG_LFOH_DHH12 H2 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH_DHH12 SMILES ACDLabs 10.04 O=C(O)C(N)CCCNC(=[N@H])N ARG_LFOH_DHH12 InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1 ARG_LFOH_DHH12 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH12 SMILES CACTVS 3.341 N[CH](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)O)N ARG_LFOH_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 L-arginine ARG_LFOH_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-carbamimidamido-pentanoic acid" # # data_ARG_LFOH_DHH22 # _chem_comp.id ARG_LFOH_DHH22 _chem_comp.name "L-ARGININE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH_DHH22 N N N 0 1 N N N 69.812 14.685 89.810 2.296 1.785 -0.322 1 ARG_LFOH_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.237 0.491 0.369 2 ARG_LFOH_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.474 -0.308 0.047 3 ARG_LFOH_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.131 -0.036 -0.929 4 ARG_LFOH_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 0.998 -0.279 -0.094 5 ARG_LFOH_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.262 0.471 0.343 6 ARG_LFOH_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.500 -0.299 -0.120 7 ARG_LFOH_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.707 0.420 0.298 8 ARG_LFOH_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.948 -0.085 -0.008 9 ARG_LFOH_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.058 -1.264 -0.707 10 ARG_LFOH_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.021 0.554 0.365 11 ARG_LFOH_DHH22 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.845 -1.321 0.846 12 ARG_LFOH_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.180 0.655 1.445 13 ARG_LFOH_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.010 -0.367 -1.181 14 ARG_LFOH_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.001 -1.274 0.351 15 ARG_LFOH_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.274 0.559 1.429 16 ARG_LFOH_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.265 1.466 -0.102 17 ARG_LFOH_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.488 -0.386 -1.207 18 ARG_LFOH_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.497 -1.294 0.325 19 ARG_LFOH_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.629 1.251 0.792 20 ARG_LFOH_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.259 -1.739 -0.984 21 ARG_LFOH_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.934 -1.620 -0.923 22 ARG_LFOH_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.944 1.386 0.858 23 ARG_LFOH_DHH22 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.646 -1.804 0.599 24 ARG_LFOH_DHH22 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.348 1.659 -1.322 25 ARG_LFOH_DHH22 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.509 2.365 -0.072 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH_DHH22 N CA SING N N 1 ARG_LFOH_DHH22 CA C SING N N 2 ARG_LFOH_DHH22 CA CB SING N N 3 ARG_LFOH_DHH22 CA HA SING N N 4 ARG_LFOH_DHH22 C O DOUB N N 5 ARG_LFOH_DHH22 C OXT SING N N 6 ARG_LFOH_DHH22 CB CG SING N N 7 ARG_LFOH_DHH22 CB HB2 SING N N 8 ARG_LFOH_DHH22 CB HB3 SING N N 9 ARG_LFOH_DHH22 CG CD SING N N 10 ARG_LFOH_DHH22 CG HG2 SING N N 11 ARG_LFOH_DHH22 CG HG3 SING N N 12 ARG_LFOH_DHH22 CD NE SING N N 13 ARG_LFOH_DHH22 CD HD2 SING N N 14 ARG_LFOH_DHH22 CD HD3 SING N N 15 ARG_LFOH_DHH22 NE CZ SING N N 16 ARG_LFOH_DHH22 NE HE SING N N 17 ARG_LFOH_DHH22 CZ NH1 SING N N 18 ARG_LFOH_DHH22 CZ NH2 DOUB N N 19 ARG_LFOH_DHH22 NH1 HH11 SING N N 20 ARG_LFOH_DHH22 NH1 HH12 SING N N 21 ARG_LFOH_DHH22 NH2 HH21 SING N N 22 ARG_LFOH_DHH22 OXT HXT SING N N 23 ARG_LFOH_DHH22 H1 N SING N N 24 ARG_LFOH_DHH22 H2 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH_DHH22 SMILES ACDLabs 10.04 O=C(O)C(N)CCCNC(=[N@H])N ARG_LFOH_DHH22 InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1 ARG_LFOH_DHH22 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH22 SMILES CACTVS 3.341 N[CH](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H](C(=O)O)N ARG_LFOH_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 L-arginine ARG_LFOH_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-carbamimidamido-pentanoic acid" # # data_ARG_LFOH_RNH1 # _chem_comp.id ARG_LFOH_RNH1 _chem_comp.name "L-ARGININE-FREE NEUTRAL/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH_RNH1 N N N 0 1 N N N 69.812 14.685 89.810 2.325 1.789 -0.306 1 ARG_LFOH_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 2.268 0.488 0.374 2 ARG_LFOH_RNH1 C C C 0 1 N N N 71.542 14.389 91.604 3.509 -0.303 0.047 3 ARG_LFOH_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 4.167 -0.021 -0.926 4 ARG_LFOH_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 1.033 -0.281 -0.098 5 ARG_LFOH_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.230 0.461 0.343 6 ARG_LFOH_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.465 -0.309 -0.130 7 ARG_LFOH_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.674 0.402 0.293 8 ARG_LFOH_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.907 -0.101 -0.019 9 ARG_LFOH_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 -4.009 -1.238 -0.706 10 ARG_LFOH_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.007 0.545 0.365 11 ARG_LFOH_RNH1 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.882 -1.322 0.838 12 ARG_LFOH_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 2.210 0.643 1.451 13 ARG_LFOH_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.048 -0.359 -1.186 14 ARG_LFOH_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.039 -1.280 0.338 15 ARG_LFOH_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.244 0.539 1.430 16 ARG_LFOH_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.235 1.460 -0.093 17 ARG_LFOH_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.450 -0.387 -1.217 18 ARG_LFOH_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.459 -1.308 0.306 19 ARG_LFOH_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.600 1.230 0.794 20 ARG_LFOH_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.883 -1.594 -0.927 21 ARG_LFOH_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -3.208 -1.708 -0.986 22 ARG_LFOH_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.933 1.372 0.866 23 ARG_LFOH_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.881 0.188 0.145 24 ARG_LFOH_RNH1 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.685 -1.800 0.588 25 ARG_LFOH_RNH1 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.380 1.672 -1.307 26 ARG_LFOH_RNH1 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.535 2.364 -0.052 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH_RNH1 N CA SING N N 1 ARG_LFOH_RNH1 CA C SING N N 2 ARG_LFOH_RNH1 CA CB SING N N 3 ARG_LFOH_RNH1 CA HA SING N N 4 ARG_LFOH_RNH1 C O DOUB N N 5 ARG_LFOH_RNH1 C OXT SING N N 6 ARG_LFOH_RNH1 CB CG SING N N 7 ARG_LFOH_RNH1 CB HB2 SING N N 8 ARG_LFOH_RNH1 CB HB3 SING N N 9 ARG_LFOH_RNH1 CG CD SING N N 10 ARG_LFOH_RNH1 CG HG2 SING N N 11 ARG_LFOH_RNH1 CG HG3 SING N N 12 ARG_LFOH_RNH1 CD NE SING N N 13 ARG_LFOH_RNH1 CD HD2 SING N N 14 ARG_LFOH_RNH1 CD HD3 SING N N 15 ARG_LFOH_RNH1 NE CZ SING N N 16 ARG_LFOH_RNH1 NE HE SING N N 17 ARG_LFOH_RNH1 CZ NH1 DOUB N N 18 ARG_LFOH_RNH1 CZ NH2 SING N N 19 ARG_LFOH_RNH1 NH1 HH11 SING N N 20 ARG_LFOH_RNH1 NH1 HH12 SING N N 21 ARG_LFOH_RNH1 NH2 HH21 SING N N 22 ARG_LFOH_RNH1 NH2 HH22 SING N N 23 ARG_LFOH_RNH1 OXT HXT SING N N 24 ARG_LFOH_RNH1 H1 N SING N N 25 ARG_LFOH_RNH1 H2 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH_RNH1 SMILES ACDLabs 10.04 O=C(O)C(N)CCCN\C(=[NH2+])N ARG_LFOH_RNH1 InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1 ARG_LFOH_RNH1 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH_RNH1 SMILES CACTVS 3.341 N[CH](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)N)CNC(=[NH2+])N ARG_LFOH_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)N)CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 amino{[(4S)-4-amino-4-carboxybutyl]amino}methaniminium ARG_LFOH_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [amino-[[(4S)-4-amino-5-hydroxy-5-oxo-pentyl]amino]methylidene]azanium # # data_ARG_LFZW # _chem_comp.id ARG_LFZW _chem_comp.name "L-ARGININE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFZW N N N 1 1 N N N 69.812 14.685 89.810 -2.364 1.710 0.348 1 ARG_LFZW CA CA C 0 1 N N S 70.052 14.573 91.280 -2.284 0.438 -0.381 2 ARG_LFZW C C C 0 1 N N N 71.542 14.389 91.604 -3.515 -0.384 -0.093 3 ARG_LFZW O O O 0 1 N N N 72.354 14.342 90.659 -3.737 -1.395 -0.737 4 ARG_LFZW CB CB C 0 1 N N N 69.227 13.419 91.854 -1.041 -0.332 0.069 5 ARG_LFZW CG CG C 0 1 N N N 67.722 13.607 91.686 0.214 0.445 -0.336 6 ARG_LFZW CD CD C 0 1 N N N 66.952 12.344 92.045 1.457 -0.324 0.115 7 ARG_LFZW NE NE N 0 1 N N N 67.307 11.224 91.178 2.658 0.420 -0.273 8 ARG_LFZW CZ CZ C 0 1 N N N 66.932 9.966 91.380 3.897 -0.077 0.027 9 ARG_LFZW NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 4.011 -1.237 0.671 10 ARG_LFZW NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 4.989 0.600 -0.326 11 ARG_LFZW OXT OXT O -1 1 N Y N 71.901 14.320 92.798 -4.287 -0.038 0.785 12 ARG_LFZW HA HA H 0 1 N N N 69.733 15.515 91.750 -2.222 0.635 -1.451 13 ARG_LFZW HB2 1HB H 0 1 N N N 69.518 12.496 91.331 -1.060 -0.452 1.152 14 ARG_LFZW HB3 2HB H 0 1 N N N 69.432 13.376 92.934 -1.029 -1.313 -0.405 15 ARG_LFZW HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.233 0.565 -1.419 16 ARG_LFZW HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.202 1.427 0.139 17 ARG_LFZW HD2 1HD H 0 1 N N N 67.187 12.072 93.085 1.438 -0.444 1.198 18 ARG_LFZW HD3 2HD H 0 1 N N N 65.879 12.549 91.916 1.469 -1.305 -0.360 19 ARG_LFZW HE HE H 0 1 N N N 67.872 11.418 90.376 2.575 1.265 -0.742 20 ARG_LFZW HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 3.216 -1.730 0.927 21 ARG_LFZW HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 4.890 -1.589 0.883 22 ARG_LFZW HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 5.867 0.247 -0.113 23 ARG_LFZW HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 4.906 1.445 -0.795 24 ARG_LFZW H1 H1 H 0 1 N N N 68.828 14.710 89.633 -1.540 2.260 0.155 25 ARG_LFZW H2 H2 H 0 1 N N N 70.234 15.524 89.467 -3.184 2.217 0.051 26 ARG_LFZW H3 H3 H 0 1 N N N 70.214 13.896 89.346 -2.422 1.527 1.339 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFZW N CA SING N N 1 ARG_LFZW CA C SING N N 2 ARG_LFZW CA CB SING N N 3 ARG_LFZW CA HA SING N N 4 ARG_LFZW C O DOUB N N 5 ARG_LFZW C OXT SING N N 6 ARG_LFZW CB CG SING N N 7 ARG_LFZW CB HB2 SING N N 8 ARG_LFZW CB HB3 SING N N 9 ARG_LFZW CG CD SING N N 10 ARG_LFZW CG HG2 SING N N 11 ARG_LFZW CG HG3 SING N N 12 ARG_LFZW CD NE SING N N 13 ARG_LFZW CD HD2 SING N N 14 ARG_LFZW CD HD3 SING N N 15 ARG_LFZW NE CZ SING N N 16 ARG_LFZW NE HE SING N N 17 ARG_LFZW CZ NH1 SING N N 18 ARG_LFZW CZ NH2 DOUB N N 19 ARG_LFZW NH1 HH11 SING N N 20 ARG_LFZW NH1 HH12 SING N N 21 ARG_LFZW NH2 HH21 SING N N 22 ARG_LFZW NH2 HH22 SING N N 23 ARG_LFZW H1 N SING N N 24 ARG_LFZW H2 N SING N N 25 ARG_LFZW H3 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C(CCCNC(\N)=[NH2+])[NH3+] ARG_LFZW InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1 ARG_LFZW SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH3+])C([O-])=O ARG_LFZW SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH3+])C([O-])=O ARG_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)[O-])[NH3+])CNC(=[NH2+])N ARG_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)[O-])[NH3+])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-ammoniopentanoate ARG_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-[(amino-azaniumylidene-methyl)amino]-2-azaniumyl-pentanoate # # data_ARG_LFZW_DHH12 # _chem_comp.id ARG_LFZW_DHH12 _chem_comp.name "L-ARGININE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFZW_DHH12 N N N 1 1 N N N 69.812 14.685 89.810 2.345 1.707 -0.335 1 ARG_LFZW_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.268 0.429 0.384 2 ARG_LFZW_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.502 -0.386 0.093 3 ARG_LFZW_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.365 0.057 -0.645 4 ARG_LFZW_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.028 -0.341 -0.076 5 ARG_LFZW_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.230 0.428 0.331 6 ARG_LFZW_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.470 -0.341 -0.129 7 ARG_LFZW_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.675 0.396 0.261 8 ARG_LFZW_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.917 -0.106 -0.048 9 ARG_LFZW_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.023 -1.237 -0.687 10 ARG_LFZW_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.048 0.586 0.318 11 ARG_LFZW_DHH12 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 3.636 -1.489 0.596 12 ARG_LFZW_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.201 0.618 1.456 13 ARG_LFZW_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.051 -0.453 -1.160 14 ARG_LFZW_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.018 -1.326 0.391 15 ARG_LFZW_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.253 0.540 1.415 16 ARG_LFZW_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.220 1.414 -0.135 17 ARG_LFZW_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.447 -0.453 -1.213 18 ARG_LFZW_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.480 -1.326 0.338 19 ARG_LFZW_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.596 1.237 0.737 20 ARG_LFZW_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.899 -1.590 -0.905 21 ARG_LFZW_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.969 1.427 0.793 22 ARG_LFZW_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.924 0.232 0.100 23 ARG_LFZW_DHH12 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.406 1.533 -1.327 24 ARG_LFZW_DHH12 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.519 2.253 -0.140 25 ARG_LFZW_DHH12 H3 H3 H 0 1 N N N 70.214 13.896 89.346 3.162 2.215 -0.032 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFZW_DHH12 N CA SING N N 1 ARG_LFZW_DHH12 CA C SING N N 2 ARG_LFZW_DHH12 CA CB SING N N 3 ARG_LFZW_DHH12 CA HA SING N N 4 ARG_LFZW_DHH12 C O DOUB N N 5 ARG_LFZW_DHH12 C OXT SING N N 6 ARG_LFZW_DHH12 CB CG SING N N 7 ARG_LFZW_DHH12 CB HB2 SING N N 8 ARG_LFZW_DHH12 CB HB3 SING N N 9 ARG_LFZW_DHH12 CG CD SING N N 10 ARG_LFZW_DHH12 CG HG2 SING N N 11 ARG_LFZW_DHH12 CG HG3 SING N N 12 ARG_LFZW_DHH12 CD NE SING N N 13 ARG_LFZW_DHH12 CD HD2 SING N N 14 ARG_LFZW_DHH12 CD HD3 SING N N 15 ARG_LFZW_DHH12 NE CZ SING N N 16 ARG_LFZW_DHH12 NE HE SING N N 17 ARG_LFZW_DHH12 CZ NH1 DOUB N N 18 ARG_LFZW_DHH12 CZ NH2 SING N N 19 ARG_LFZW_DHH12 NH1 HH11 SING N N 20 ARG_LFZW_DHH12 NH2 HH21 SING N N 21 ARG_LFZW_DHH12 NH2 HH22 SING N N 22 ARG_LFZW_DHH12 H1 N SING N N 23 ARG_LFZW_DHH12 H2 N SING N N 24 ARG_LFZW_DHH12 H3 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFZW_DHH12 SMILES ACDLabs 10.04 [O-]C(=O)C(CCCNC(=[N@H])N)[NH3+] ARG_LFZW_DHH12 InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1 ARG_LFZW_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH3+])C([O-])=O ARG_LFZW_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH3+])C([O-])=O ARG_LFZW_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)[O-])[NH3+] ARG_LFZW_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFZW_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-5-carbamimidamidopentanoate ARG_LFZW_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-5-carbamimidamido-pentanoate # # data_ARG_LFZW_DHH22 # _chem_comp.id ARG_LFZW_DHH22 _chem_comp.name "L-ARGININE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFZW_DHH22 N N N 1 1 N N N 69.812 14.685 89.810 2.338 1.698 -0.377 1 ARG_LFZW_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.253 0.439 0.374 2 ARG_LFZW_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.479 -0.394 0.099 3 ARG_LFZW_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.343 0.023 -0.654 4 ARG_LFZW_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.005 -0.331 -0.061 5 ARG_LFZW_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.245 0.459 0.332 6 ARG_LFZW_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.493 -0.311 -0.104 7 ARG_LFZW_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.690 0.446 0.273 8 ARG_LFZW_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.938 -0.052 -0.018 9 ARG_LFZW_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.063 -1.260 -0.662 10 ARG_LFZW_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.002 0.622 0.316 11 ARG_LFZW_DHH22 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 3.606 -1.485 0.628 12 ARG_LFZW_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.193 0.655 1.441 13 ARG_LFZW_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.022 -0.470 -1.142 14 ARG_LFZW_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 0.988 -1.304 0.430 15 ARG_LFZW_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.262 0.598 1.413 16 ARG_LFZW_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.228 1.432 -0.159 17 ARG_LFZW_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.476 -0.450 -1.184 18 ARG_LFZW_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.510 -1.284 0.387 19 ARG_LFZW_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.601 1.299 0.727 20 ARG_LFZW_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.271 -1.761 -0.911 21 ARG_LFZW_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.944 -1.611 -0.867 22 ARG_LFZW_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.914 1.474 0.771 23 ARG_LFZW_DHH22 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.394 1.498 -1.364 24 ARG_LFZW_DHH22 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.518 2.256 -0.192 25 ARG_LFZW_DHH22 H3 H3 H 0 1 N N N 70.214 13.896 89.346 3.161 2.206 -0.090 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFZW_DHH22 N CA SING N N 1 ARG_LFZW_DHH22 CA C SING N N 2 ARG_LFZW_DHH22 CA CB SING N N 3 ARG_LFZW_DHH22 CA HA SING N N 4 ARG_LFZW_DHH22 C O DOUB N N 5 ARG_LFZW_DHH22 C OXT SING N N 6 ARG_LFZW_DHH22 CB CG SING N N 7 ARG_LFZW_DHH22 CB HB2 SING N N 8 ARG_LFZW_DHH22 CB HB3 SING N N 9 ARG_LFZW_DHH22 CG CD SING N N 10 ARG_LFZW_DHH22 CG HG2 SING N N 11 ARG_LFZW_DHH22 CG HG3 SING N N 12 ARG_LFZW_DHH22 CD NE SING N N 13 ARG_LFZW_DHH22 CD HD2 SING N N 14 ARG_LFZW_DHH22 CD HD3 SING N N 15 ARG_LFZW_DHH22 NE CZ SING N N 16 ARG_LFZW_DHH22 NE HE SING N N 17 ARG_LFZW_DHH22 CZ NH1 SING N N 18 ARG_LFZW_DHH22 CZ NH2 DOUB N N 19 ARG_LFZW_DHH22 NH1 HH11 SING N N 20 ARG_LFZW_DHH22 NH1 HH12 SING N N 21 ARG_LFZW_DHH22 NH2 HH21 SING N N 22 ARG_LFZW_DHH22 H1 N SING N N 23 ARG_LFZW_DHH22 H2 N SING N N 24 ARG_LFZW_DHH22 H3 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFZW_DHH22 SMILES ACDLabs 10.04 [O-]C(=O)C(CCCNC(=[N@H])N)[NH3+] ARG_LFZW_DHH22 InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1 ARG_LFZW_DHH22 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH3+])C([O-])=O ARG_LFZW_DHH22 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH3+])C([O-])=O ARG_LFZW_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H](C(=O)[O-])[NH3+] ARG_LFZW_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFZW_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-5-carbamimidamidopentanoate ARG_LFZW_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-5-carbamimidamido-pentanoate # # data_ARG_LFZW_RNH1 # _chem_comp.id ARG_LFZW_RNH1 _chem_comp.name "L-ARGININE-FREE ZWITTERION/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFZW_RNH1 N N N 1 1 N N N 69.812 14.685 89.810 -2.364 1.710 0.348 1 ARG_LFZW_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 -2.284 0.438 -0.381 2 ARG_LFZW_RNH1 C C C 0 1 N N N 71.542 14.389 91.604 -3.515 -0.384 -0.093 3 ARG_LFZW_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 -3.737 -1.395 -0.737 4 ARG_LFZW_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 -1.041 -0.332 0.069 5 ARG_LFZW_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 0.214 0.445 -0.336 6 ARG_LFZW_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 1.457 -0.324 0.115 7 ARG_LFZW_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 2.658 0.420 -0.273 8 ARG_LFZW_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 3.897 -0.077 0.027 9 ARG_LFZW_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 4.011 -1.237 0.671 10 ARG_LFZW_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 4.989 0.600 -0.326 11 ARG_LFZW_RNH1 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 -4.287 -0.038 0.785 12 ARG_LFZW_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 -2.222 0.635 -1.451 13 ARG_LFZW_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 -1.060 -0.452 1.152 14 ARG_LFZW_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 -1.029 -1.313 -0.405 15 ARG_LFZW_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.233 0.565 -1.419 16 ARG_LFZW_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.202 1.427 0.139 17 ARG_LFZW_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 1.438 -0.444 1.198 18 ARG_LFZW_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 1.469 -1.305 -0.360 19 ARG_LFZW_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 2.575 1.265 -0.742 20 ARG_LFZW_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 3.216 -1.730 0.927 21 ARG_LFZW_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 4.890 -1.589 0.883 22 ARG_LFZW_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 4.906 1.445 -0.795 23 ARG_LFZW_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 5.867 0.247 -0.113 24 ARG_LFZW_RNH1 H1 H1 H 0 1 N N N 68.828 14.710 89.633 -1.540 2.260 0.155 25 ARG_LFZW_RNH1 H2 H2 H 0 1 N N N 70.234 15.524 89.467 -3.184 2.217 0.051 26 ARG_LFZW_RNH1 H3 H3 H 0 1 N N N 70.214 13.896 89.346 -2.422 1.527 1.339 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFZW_RNH1 N CA SING N N 1 ARG_LFZW_RNH1 CA C SING N N 2 ARG_LFZW_RNH1 CA CB SING N N 3 ARG_LFZW_RNH1 CA HA SING N N 4 ARG_LFZW_RNH1 C O DOUB N N 5 ARG_LFZW_RNH1 C OXT SING N N 6 ARG_LFZW_RNH1 CB CG SING N N 7 ARG_LFZW_RNH1 CB HB2 SING N N 8 ARG_LFZW_RNH1 CB HB3 SING N N 9 ARG_LFZW_RNH1 CG CD SING N N 10 ARG_LFZW_RNH1 CG HG2 SING N N 11 ARG_LFZW_RNH1 CG HG3 SING N N 12 ARG_LFZW_RNH1 CD NE SING N N 13 ARG_LFZW_RNH1 CD HD2 SING N N 14 ARG_LFZW_RNH1 CD HD3 SING N N 15 ARG_LFZW_RNH1 NE CZ SING N N 16 ARG_LFZW_RNH1 NE HE SING N N 17 ARG_LFZW_RNH1 CZ NH1 DOUB N N 18 ARG_LFZW_RNH1 CZ NH2 SING N N 19 ARG_LFZW_RNH1 NH1 HH11 SING N N 20 ARG_LFZW_RNH1 NH1 HH12 SING N N 21 ARG_LFZW_RNH1 NH2 HH21 SING N N 22 ARG_LFZW_RNH1 NH2 HH22 SING N N 23 ARG_LFZW_RNH1 H1 N SING N N 24 ARG_LFZW_RNH1 H2 N SING N N 25 ARG_LFZW_RNH1 H3 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFZW_RNH1 SMILES ACDLabs 10.04 [O-]C(=O)C(CCCNC(\N)=[NH2+])[NH3+] ARG_LFZW_RNH1 InChI InChI 1.01 InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1 ARG_LFZW_RNH1 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH3+])C([O-])=O ARG_LFZW_RNH1 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH3+])C([O-])=O ARG_LFZW_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)[O-])[NH3+])CNC(=[NH2+])N ARG_LFZW_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)[O-])[NH3+])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFZW_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-ammoniopentanoate ARG_LFZW_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-[(amino-azaniumylidene-methyl)amino]-2-azaniumyl-pentanoate # # data_ARG_LL # _chem_comp.id ARG_LL _chem_comp.name "L-ARGININE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 157.194 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LL N N N -1 1 N N N 69.812 14.685 89.810 2.816 1.309 -0.741 1 ARG_LL CA CA C 0 1 N N S 70.052 14.573 91.280 2.684 0.215 0.230 2 ARG_LL C C C -1 1 N N N 71.542 14.389 91.604 3.858 -0.720 0.095 3 ARG_LL O O O 0 1 N N N 72.354 14.342 90.659 4.980 -0.310 0.270 4 ARG_LL CB CB C 0 1 N N N 69.227 13.419 91.854 1.388 -0.552 -0.040 5 ARG_LL CG CG C 0 1 N N N 67.722 13.607 91.686 0.190 0.365 0.218 6 ARG_LL CD CD C 0 1 N N N 66.952 12.344 92.045 -1.106 -0.402 -0.051 7 ARG_LL NE NE N 0 1 N N N 67.307 11.224 91.178 -2.253 0.475 0.196 8 ARG_LL CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.525 0.004 0.019 9 ARG_LL NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -3.721 -1.252 -0.377 10 ARG_LL NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 -4.568 0.802 0.244 11 ARG_LL H H H 0 1 N N N 68.828 14.710 89.633 2.840 0.954 -1.686 12 ARG_LL HA HA H 0 1 N N N 69.733 15.515 91.750 2.660 0.626 1.239 13 ARG_LL HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.372 -0.887 -1.077 14 ARG_LL HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.333 -1.416 0.622 15 ARG_LL HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.205 0.700 1.255 16 ARG_LL HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.245 1.229 -0.444 17 ARG_LL HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.122 -0.737 -1.088 18 ARG_LL HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.161 -1.267 0.611 19 ARG_LL HE HE H 0 1 N N N 67.872 11.418 90.376 -2.110 1.390 0.484 20 ARG_LL HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -2.962 -1.833 -0.540 21 ARG_LL HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.623 -1.586 -0.502 22 ARG_LL HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.425 1.717 0.532 23 ARG_LL HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.470 0.468 0.119 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LL N CA SING N N 1 ARG_LL N H SING N N 2 ARG_LL CA C SING N N 3 ARG_LL CA CB SING N N 4 ARG_LL CA HA SING N N 5 ARG_LL C O DOUB N N 6 ARG_LL CB CG SING N N 7 ARG_LL CB HB2 SING N N 8 ARG_LL CB HB3 SING N N 9 ARG_LL CG CD SING N N 10 ARG_LL CG HG2 SING N N 11 ARG_LL CG HG3 SING N N 12 ARG_LL CD NE SING N N 13 ARG_LL CD HD2 SING N N 14 ARG_LL CD HD3 SING N N 15 ARG_LL NE CZ SING N N 16 ARG_LL NE HE SING N N 17 ARG_LL CZ NH1 SING N N 18 ARG_LL CZ NH2 DOUB N N 19 ARG_LL NH1 HH11 SING N N 20 ARG_LL NH1 HH12 SING N N 21 ARG_LL NH2 HH21 SING N N 22 ARG_LL NH2 HH22 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CCCNC(\N)=[NH2+] ARG_LL InChI InChI 1.01 InChI=1/C6H12N4O/c7-5(4-11)2-1-3-10-6(8)9/h5,7H,1-3H2,(H4,8,9,10)/q-2/p+1/t5-/m0/s1 ARG_LL SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])[C-]=O ARG_LL SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])[C-]=O ARG_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H]([C-]=O)[NH-])CNC(=[NH2+])N ARG_LL SMILES "OpenEye OEToolkits" 1.5.0 C(CC([C-]=O)[NH-])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(3-{[amino(iminio)methyl]amino}propyl)-2-oxoethan-2-idyl]azanide ARG_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-oxo-pentan-2-yl]azanide # # data_ARG_LL_DHH12 # _chem_comp.id ARG_LL_DHH12 _chem_comp.name "L-ARGININE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 156.186 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LL_DHH12 N N N -1 1 N N N 69.812 14.685 89.810 2.797 1.310 -0.732 1 ARG_LL_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.658 0.209 0.230 2 ARG_LL_DHH12 C C C -1 1 N N N 71.542 14.389 91.604 3.824 -0.734 0.086 3 ARG_LL_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.950 -0.334 0.261 4 ARG_LL_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.355 -0.545 -0.042 5 ARG_LL_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 0.165 0.379 0.226 6 ARG_LL_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.138 -0.375 -0.046 7 ARG_LL_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.277 0.510 0.211 8 ARG_LL_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.560 0.048 0.033 9 ARG_LL_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.573 0.835 0.261 10 ARG_LL_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -3.773 -1.244 -0.386 11 ARG_LL_DHH12 H H H 0 1 N N N 68.828 14.710 89.633 2.816 0.962 -1.679 12 ARG_LL_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.640 0.612 1.243 13 ARG_LL_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.334 -0.872 -1.081 14 ARG_LL_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.295 -1.414 0.614 15 ARG_LL_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.186 0.706 1.266 16 ARG_LL_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.226 1.248 -0.429 17 ARG_LL_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.158 -0.702 -1.086 18 ARG_LL_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.198 -1.244 0.609 19 ARG_LL_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.126 1.421 0.506 20 ARG_LL_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -5.478 0.510 0.135 21 ARG_LL_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -3.019 -1.830 -0.555 22 ARG_LL_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -4.678 -1.570 -0.511 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LL_DHH12 N CA SING N N 1 ARG_LL_DHH12 N H SING N N 2 ARG_LL_DHH12 CA C SING N N 3 ARG_LL_DHH12 CA CB SING N N 4 ARG_LL_DHH12 CA HA SING N N 5 ARG_LL_DHH12 C O DOUB N N 6 ARG_LL_DHH12 CB CG SING N N 7 ARG_LL_DHH12 CB HB2 SING N N 8 ARG_LL_DHH12 CB HB3 SING N N 9 ARG_LL_DHH12 CG CD SING N N 10 ARG_LL_DHH12 CG HG2 SING N N 11 ARG_LL_DHH12 CG HG3 SING N N 12 ARG_LL_DHH12 CD NE SING N N 13 ARG_LL_DHH12 CD HD2 SING N N 14 ARG_LL_DHH12 CD HD3 SING N N 15 ARG_LL_DHH12 NE CZ SING N N 16 ARG_LL_DHH12 NE HE SING N N 17 ARG_LL_DHH12 CZ NH1 DOUB N N 18 ARG_LL_DHH12 CZ NH2 SING N N 19 ARG_LL_DHH12 NH1 HH11 SING N N 20 ARG_LL_DHH12 NH2 HH21 SING N N 21 ARG_LL_DHH12 NH2 HH22 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LL_DHH12 SMILES ACDLabs 10.04 O=[C-]C([NH-])CCCNC(=[N@H])N ARG_LL_DHH12 InChI InChI 1.01 InChI=1/C6H12N4O/c7-5(4-11)2-1-3-10-6(8)9/h5,7H,1-3H2,(H4,8,9,10)/q-2/t5-/m0/s1 ARG_LL_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])[C-]=O ARG_LL_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])[C-]=O ARG_LL_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H]([C-]=O)[NH-] ARG_LL_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LL_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(3-carbamimidamidopropyl)-2-oxoethan-2-idyl]azanide ARG_LL_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-oxo-pentan-2-yl]azanide # # data_ARG_LL_DHH22 # _chem_comp.id ARG_LL_DHH22 _chem_comp.name "L-ARGININE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 156.186 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LL_DHH22 N N N -1 1 N N N 69.812 14.685 89.810 2.786 1.302 -0.749 1 ARG_LL_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.650 0.213 0.228 2 ARG_LL_DHH22 C C C -1 1 N N N 71.542 14.389 91.604 3.820 -0.728 0.097 3 ARG_LL_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.944 -0.322 0.268 4 ARG_LL_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.350 -0.549 -0.036 5 ARG_LL_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 0.157 0.374 0.219 6 ARG_LL_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.143 -0.388 -0.045 7 ARG_LL_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.286 0.497 0.199 8 ARG_LL_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.567 0.028 0.026 9 ARG_LL_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -3.776 -1.270 -0.376 10 ARG_LL_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.583 0.815 0.243 11 ARG_LL_DHH22 H H H 0 1 N N N 68.828 14.710 89.633 2.808 0.942 -1.691 12 ARG_LL_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.630 0.629 1.235 13 ARG_LL_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.332 -0.889 -1.071 14 ARG_LL_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.292 -1.410 0.631 15 ARG_LL_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.175 0.715 1.254 16 ARG_LL_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.215 1.235 -0.447 17 ARG_LL_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.162 -0.728 -1.080 18 ARG_LL_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.201 -1.248 0.622 19 ARG_LL_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.138 1.412 0.483 20 ARG_LL_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.019 -1.855 -0.538 21 ARG_LL_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.679 -1.600 -0.498 22 ARG_LL_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.436 1.731 0.526 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LL_DHH22 N CA SING N N 1 ARG_LL_DHH22 N H SING N N 2 ARG_LL_DHH22 CA C SING N N 3 ARG_LL_DHH22 CA CB SING N N 4 ARG_LL_DHH22 CA HA SING N N 5 ARG_LL_DHH22 C O DOUB N N 6 ARG_LL_DHH22 CB CG SING N N 7 ARG_LL_DHH22 CB HB2 SING N N 8 ARG_LL_DHH22 CB HB3 SING N N 9 ARG_LL_DHH22 CG CD SING N N 10 ARG_LL_DHH22 CG HG2 SING N N 11 ARG_LL_DHH22 CG HG3 SING N N 12 ARG_LL_DHH22 CD NE SING N N 13 ARG_LL_DHH22 CD HD2 SING N N 14 ARG_LL_DHH22 CD HD3 SING N N 15 ARG_LL_DHH22 NE CZ SING N N 16 ARG_LL_DHH22 NE HE SING N N 17 ARG_LL_DHH22 CZ NH1 SING N N 18 ARG_LL_DHH22 CZ NH2 DOUB N N 19 ARG_LL_DHH22 NH1 HH11 SING N N 20 ARG_LL_DHH22 NH1 HH12 SING N N 21 ARG_LL_DHH22 NH2 HH21 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LL_DHH22 SMILES ACDLabs 10.04 O=[C-]C([NH-])CCCNC(=[N@H])N ARG_LL_DHH22 InChI InChI 1.01 InChI=1/C6H12N4O/c7-5(4-11)2-1-3-10-6(8)9/h5,7H,1-3H2,(H4,8,9,10)/q-2/t5-/m0/s1 ARG_LL_DHH22 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])[C-]=O ARG_LL_DHH22 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])[C-]=O ARG_LL_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H]([C-]=O)[NH-] ARG_LL_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LL_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(3-carbamimidamidopropyl)-2-oxoethan-2-idyl]azanide ARG_LL_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-oxo-pentan-2-yl]azanide # # data_ARG_LL_RNH1 # _chem_comp.id ARG_LL_RNH1 _chem_comp.name "L-ARGININE-LINKING EMBEDDED FRAGMENT/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 157.194 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LL_RNH1 N N N -1 1 N N N 69.812 14.685 89.810 2.816 1.309 -0.741 1 ARG_LL_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 2.684 0.215 0.230 2 ARG_LL_RNH1 C C C -1 1 N N N 71.542 14.389 91.604 3.858 -0.720 0.095 3 ARG_LL_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 4.980 -0.310 0.270 4 ARG_LL_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 1.388 -0.552 -0.040 5 ARG_LL_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 0.190 0.365 0.218 6 ARG_LL_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.106 -0.402 -0.051 7 ARG_LL_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.253 0.475 0.196 8 ARG_LL_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.525 0.004 0.019 9 ARG_LL_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 -3.721 -1.252 -0.377 10 ARG_LL_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.568 0.802 0.244 11 ARG_LL_RNH1 H H H 0 1 N N N 68.828 14.710 89.633 2.840 0.954 -1.686 12 ARG_LL_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 2.660 0.626 1.239 13 ARG_LL_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.372 -0.887 -1.077 14 ARG_LL_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.333 -1.416 0.622 15 ARG_LL_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.205 0.700 1.255 16 ARG_LL_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.245 1.229 -0.444 17 ARG_LL_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.122 -0.737 -1.088 18 ARG_LL_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.161 -1.267 0.611 19 ARG_LL_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.110 1.390 0.484 20 ARG_LL_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.623 -1.586 -0.502 21 ARG_LL_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -2.962 -1.833 -0.540 22 ARG_LL_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.425 1.717 0.532 23 ARG_LL_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.470 0.468 0.119 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LL_RNH1 N CA SING N N 1 ARG_LL_RNH1 N H SING N N 2 ARG_LL_RNH1 CA C SING N N 3 ARG_LL_RNH1 CA CB SING N N 4 ARG_LL_RNH1 CA HA SING N N 5 ARG_LL_RNH1 C O DOUB N N 6 ARG_LL_RNH1 CB CG SING N N 7 ARG_LL_RNH1 CB HB2 SING N N 8 ARG_LL_RNH1 CB HB3 SING N N 9 ARG_LL_RNH1 CG CD SING N N 10 ARG_LL_RNH1 CG HG2 SING N N 11 ARG_LL_RNH1 CG HG3 SING N N 12 ARG_LL_RNH1 CD NE SING N N 13 ARG_LL_RNH1 CD HD2 SING N N 14 ARG_LL_RNH1 CD HD3 SING N N 15 ARG_LL_RNH1 NE CZ SING N N 16 ARG_LL_RNH1 NE HE SING N N 17 ARG_LL_RNH1 CZ NH1 DOUB N N 18 ARG_LL_RNH1 CZ NH2 SING N N 19 ARG_LL_RNH1 NH1 HH11 SING N N 20 ARG_LL_RNH1 NH1 HH12 SING N N 21 ARG_LL_RNH1 NH2 HH21 SING N N 22 ARG_LL_RNH1 NH2 HH22 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LL_RNH1 SMILES ACDLabs 10.04 O=[C-]C([NH-])CCCNC(\N)=[NH2+] ARG_LL_RNH1 InChI InChI 1.01 InChI=1/C6H12N4O/c7-5(4-11)2-1-3-10-6(8)9/h5,7H,1-3H2,(H4,8,9,10)/q-2/p+1/t5-/m0/s1 ARG_LL_RNH1 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])[C-]=O ARG_LL_RNH1 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])[C-]=O ARG_LL_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H]([C-]=O)[NH-])CNC(=[NH2+])N ARG_LL_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC([C-]=O)[NH-])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LL_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(3-{[amino(iminio)methyl]amino}propyl)-2-oxoethan-2-idyl]azanide ARG_LL_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-oxo-pentan-2-yl]azanide # # data_ARG_LSN3 # _chem_comp.id ARG_LSN3 _chem_comp.name "L-ARGININE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 159.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LSN3 N N N 1 1 N N N 69.812 14.685 89.810 -2.790 1.287 0.692 1 ARG_LSN3 CA CA C 0 1 N N S 70.052 14.573 91.280 -2.648 0.167 -0.248 2 ARG_LSN3 C C C -1 1 N N N 71.542 14.389 91.604 -3.816 -0.773 -0.089 3 ARG_LSN3 O O O 0 1 N N N 72.354 14.342 90.659 -4.941 -0.375 -0.277 4 ARG_LSN3 CB CB C 0 1 N N N 69.227 13.419 91.854 -1.348 -0.584 0.045 5 ARG_LSN3 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.156 0.333 -0.236 6 ARG_LSN3 CD CD C 0 1 N N N 66.952 12.344 92.045 1.145 -0.417 0.057 7 ARG_LSN3 NE NE N 0 1 N N N 67.307 11.224 91.178 2.286 0.461 -0.212 8 ARG_LSN3 CZ CZ C 0 1 N N N 66.932 9.966 91.380 3.561 0.004 -0.020 9 ARG_LSN3 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 3.765 -1.239 0.412 10 ARG_LSN3 NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 4.599 0.803 -0.264 11 ARG_LSN3 HA HA H 0 1 N N N 69.733 15.515 91.750 -2.625 0.549 -1.268 12 ARG_LSN3 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 -1.332 -0.889 1.092 13 ARG_LSN3 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 -1.286 -1.466 -0.592 14 ARG_LSN3 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.171 0.639 -1.282 15 ARG_LSN3 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.218 1.216 0.402 16 ARG_LSN3 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 1.161 -0.722 1.104 17 ARG_LSN3 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 1.207 -1.299 -0.580 18 ARG_LSN3 HE HE H 0 1 N N N 67.872 11.418 90.376 2.138 1.367 -0.526 19 ARG_LSN3 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 3.009 -1.821 0.590 20 ARG_LSN3 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 4.669 -1.563 0.548 21 ARG_LSN3 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 5.503 0.479 -0.128 22 ARG_LSN3 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 4.451 1.708 -0.579 23 ARG_LSN3 H1 H1 H 0 1 N N N 68.828 14.710 89.633 -2.008 1.916 0.586 24 ARG_LSN3 H2 H2 H 0 1 N N N 70.234 15.524 89.467 -3.648 1.781 0.499 25 ARG_LSN3 H3 H3 H 0 1 N N N 70.214 13.896 89.346 -2.811 0.933 1.637 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LSN3 N CA SING N N 1 ARG_LSN3 CA C SING N N 2 ARG_LSN3 CA CB SING N N 3 ARG_LSN3 CA HA SING N N 4 ARG_LSN3 C O DOUB N N 5 ARG_LSN3 CB CG SING N N 6 ARG_LSN3 CB HB2 SING N N 7 ARG_LSN3 CB HB3 SING N N 8 ARG_LSN3 CG CD SING N N 9 ARG_LSN3 CG HG2 SING N N 10 ARG_LSN3 CG HG3 SING N N 11 ARG_LSN3 CD NE SING N N 12 ARG_LSN3 CD HD2 SING N N 13 ARG_LSN3 CD HD3 SING N N 14 ARG_LSN3 NE CZ SING N N 15 ARG_LSN3 NE HE SING N N 16 ARG_LSN3 CZ NH1 SING N N 17 ARG_LSN3 CZ NH2 DOUB N N 18 ARG_LSN3 NH1 HH11 SING N N 19 ARG_LSN3 NH1 HH12 SING N N 20 ARG_LSN3 NH2 HH21 SING N N 21 ARG_LSN3 NH2 HH22 SING N N 22 ARG_LSN3 H1 N SING N N 23 ARG_LSN3 H2 N SING N N 24 ARG_LSN3 H3 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LSN3 SMILES ACDLabs 10.04 O=[C-]C(CCCNC(\N)=[NH2+])[NH3+] ARG_LSN3 InChI InChI 1.01 InChI=1/C6H13N4O/c7-5(4-11)2-1-3-10-6(8)9/h5H,1-3,7H2,(H4,8,9,10)/q-1/p+2/t5-/m0/s1 ARG_LSN3 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH3+])[C-]=O ARG_LSN3 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH3+])[C-]=O ARG_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H]([C-]=O)[NH3+])CNC(=[NH2+])N ARG_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(CC([C-]=O)[NH3+])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-ammonio-1-oxopentan-1-ide ARG_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-oxo-pentan-2-yl]azanium # # data_ARG_LSN3_DHH12 # _chem_comp.id ARG_LSN3_DHH12 _chem_comp.name "L-ARGININE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 158.202 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LSN3_DHH12 N N N 1 1 N N N 69.812 14.685 89.810 2.769 1.299 -0.669 1 ARG_LSN3_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.633 0.161 0.250 2 ARG_LSN3_DHH12 C C C -1 1 N N N 71.542 14.389 91.604 3.806 -0.768 0.077 3 ARG_LSN3_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.928 -0.367 0.274 4 ARG_LSN3_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.337 -0.591 -0.059 5 ARG_LSN3_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 0.139 0.314 0.236 6 ARG_LSN3_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.157 -0.438 -0.073 7 ARG_LSN3_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.304 0.428 0.210 8 ARG_LSN3_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.582 -0.035 0.007 9 ARG_LSN3_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -3.774 -1.245 -0.438 10 ARG_LSN3_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.659 0.778 0.272 11 ARG_LSN3_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.606 0.525 1.277 12 ARG_LSN3_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.325 -0.878 -1.110 13 ARG_LSN3_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.279 -1.485 0.562 14 ARG_LSN3_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.151 0.601 1.288 15 ARG_LSN3_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.197 1.208 -0.385 16 ARG_LSN3_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.169 -0.725 -1.124 17 ARG_LSN3_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.215 -1.332 0.548 18 ARG_LSN3_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.161 1.329 0.541 19 ARG_LSN3_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.675 -1.572 -0.582 20 ARG_LSN3_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.516 1.678 0.603 21 ARG_LSN3_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.560 0.451 0.128 22 ARG_LSN3_DHH12 H1 H1 H 0 1 N N N 68.828 14.710 89.633 3.624 1.796 -0.465 23 ARG_LSN3_DHH12 H2 H2 H 0 1 N N N 70.234 15.524 89.467 2.795 0.963 -1.620 24 ARG_LSN3_DHH12 H3 H3 H 0 1 N N N 70.214 13.896 89.346 1.984 1.921 -0.553 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LSN3_DHH12 N CA SING N N 1 ARG_LSN3_DHH12 CA C SING N N 2 ARG_LSN3_DHH12 CA CB SING N N 3 ARG_LSN3_DHH12 CA HA SING N N 4 ARG_LSN3_DHH12 C O DOUB N N 5 ARG_LSN3_DHH12 CB CG SING N N 6 ARG_LSN3_DHH12 CB HB2 SING N N 7 ARG_LSN3_DHH12 CB HB3 SING N N 8 ARG_LSN3_DHH12 CG CD SING N N 9 ARG_LSN3_DHH12 CG HG2 SING N N 10 ARG_LSN3_DHH12 CG HG3 SING N N 11 ARG_LSN3_DHH12 CD NE SING N N 12 ARG_LSN3_DHH12 CD HD2 SING N N 13 ARG_LSN3_DHH12 CD HD3 SING N N 14 ARG_LSN3_DHH12 NE CZ SING N N 15 ARG_LSN3_DHH12 NE HE SING N N 16 ARG_LSN3_DHH12 CZ NH1 DOUB N N 17 ARG_LSN3_DHH12 CZ NH2 SING N N 18 ARG_LSN3_DHH12 NH1 HH11 SING N N 19 ARG_LSN3_DHH12 NH2 HH21 SING N N 20 ARG_LSN3_DHH12 NH2 HH22 SING N N 21 ARG_LSN3_DHH12 H1 N SING N N 22 ARG_LSN3_DHH12 H2 N SING N N 23 ARG_LSN3_DHH12 H3 N SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LSN3_DHH12 SMILES ACDLabs 10.04 O=[C-]C(CCCNC(=[N@H])N)[NH3+] ARG_LSN3_DHH12 InChI InChI 1.01 InChI=1/C6H13N4O/c7-5(4-11)2-1-3-10-6(8)9/h5H,1-3,7H2,(H4,8,9,10)/q-1/p+1/t5-/m0/s1 ARG_LSN3_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH3+])[C-]=O ARG_LSN3_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH3+])[C-]=O ARG_LSN3_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H]([C-]=O)[NH3+] ARG_LSN3_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LSN3_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-5-carbamimidamido-1-oxopentan-1-ide ARG_LSN3_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-oxo-pentan-2-yl]azanium # # data_ARG_LSN3_DHH22 # _chem_comp.id ARG_LSN3_DHH22 _chem_comp.name "L-ARGININE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 158.202 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LSN3_DHH22 N N N 1 1 N N N 69.812 14.685 89.810 2.757 1.302 -0.671 1 ARG_LSN3_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.622 0.167 0.251 2 ARG_LSN3_DHH22 C C C -1 1 N N N 71.542 14.389 91.604 3.797 -0.761 0.082 3 ARG_LSN3_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.918 -0.358 0.278 4 ARG_LSN3_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.327 -0.588 -0.056 5 ARG_LSN3_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 0.128 0.316 0.236 6 ARG_LSN3_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.167 -0.438 -0.072 7 ARG_LSN3_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.315 0.427 0.208 8 ARG_LSN3_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.593 -0.038 0.005 9 ARG_LSN3_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.670 0.774 0.267 10 ARG_LSN3_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -3.782 -1.250 -0.436 11 ARG_LSN3_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.594 0.534 1.277 12 ARG_LSN3_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.316 -0.878 -1.107 13 ARG_LSN3_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.270 -1.480 0.568 14 ARG_LSN3_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.139 0.606 1.286 15 ARG_LSN3_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.185 1.209 -0.388 16 ARG_LSN3_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.178 -0.728 -1.122 17 ARG_LSN3_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.224 -1.331 0.552 18 ARG_LSN3_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.174 1.329 0.536 19 ARG_LSN3_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.529 1.676 0.596 20 ARG_LSN3_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -5.572 0.446 0.124 21 ARG_LSN3_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -3.022 -1.823 -0.621 22 ARG_LSN3_DHH22 H1 H1 H 0 1 N N N 68.828 14.710 89.633 3.611 1.800 -0.468 23 ARG_LSN3_DHH22 H2 H2 H 0 1 N N N 70.234 15.524 89.467 2.784 0.963 -1.621 24 ARG_LSN3_DHH22 H3 H3 H 0 1 N N N 70.214 13.896 89.346 1.971 1.924 -0.558 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LSN3_DHH22 N CA SING N N 1 ARG_LSN3_DHH22 CA C SING N N 2 ARG_LSN3_DHH22 CA CB SING N N 3 ARG_LSN3_DHH22 CA HA SING N N 4 ARG_LSN3_DHH22 C O DOUB N N 5 ARG_LSN3_DHH22 CB CG SING N N 6 ARG_LSN3_DHH22 CB HB2 SING N N 7 ARG_LSN3_DHH22 CB HB3 SING N N 8 ARG_LSN3_DHH22 CG CD SING N N 9 ARG_LSN3_DHH22 CG HG2 SING N N 10 ARG_LSN3_DHH22 CG HG3 SING N N 11 ARG_LSN3_DHH22 CD NE SING N N 12 ARG_LSN3_DHH22 CD HD2 SING N N 13 ARG_LSN3_DHH22 CD HD3 SING N N 14 ARG_LSN3_DHH22 NE CZ SING N N 15 ARG_LSN3_DHH22 NE HE SING N N 16 ARG_LSN3_DHH22 CZ NH1 SING N N 17 ARG_LSN3_DHH22 CZ NH2 DOUB N N 18 ARG_LSN3_DHH22 NH1 HH11 SING N N 19 ARG_LSN3_DHH22 NH1 HH12 SING N N 20 ARG_LSN3_DHH22 NH2 HH21 SING N N 21 ARG_LSN3_DHH22 H1 N SING N N 22 ARG_LSN3_DHH22 H2 N SING N N 23 ARG_LSN3_DHH22 H3 N SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LSN3_DHH22 SMILES ACDLabs 10.04 O=[C-]C(CCCNC(=[N@H])N)[NH3+] ARG_LSN3_DHH22 InChI InChI 1.01 InChI=1/C6H13N4O/c7-5(4-11)2-1-3-10-6(8)9/h5H,1-3,7H2,(H4,8,9,10)/q-1/p+1/t5-/m0/s1 ARG_LSN3_DHH22 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH3+])[C-]=O ARG_LSN3_DHH22 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH3+])[C-]=O ARG_LSN3_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H]([C-]=O)[NH3+] ARG_LSN3_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LSN3_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-5-carbamimidamido-1-oxopentan-1-ide ARG_LSN3_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-oxo-pentan-2-yl]azanium # # data_ARG_LSN3_RNH1 # _chem_comp.id ARG_LSN3_RNH1 _chem_comp.name "L-ARGININE-N-TERMINAL PROTONATED FRAGMENT/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 159.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LSN3_RNH1 N N N 1 1 N N N 69.812 14.685 89.810 -2.790 1.287 0.692 1 ARG_LSN3_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 -2.648 0.167 -0.248 2 ARG_LSN3_RNH1 C C C -1 1 N N N 71.542 14.389 91.604 -3.816 -0.773 -0.089 3 ARG_LSN3_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 -4.941 -0.375 -0.277 4 ARG_LSN3_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 -1.348 -0.584 0.045 5 ARG_LSN3_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.156 0.333 -0.236 6 ARG_LSN3_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 1.145 -0.417 0.057 7 ARG_LSN3_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 2.286 0.461 -0.212 8 ARG_LSN3_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 3.561 0.004 -0.020 9 ARG_LSN3_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 3.765 -1.239 0.412 10 ARG_LSN3_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 4.599 0.803 -0.264 11 ARG_LSN3_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 -2.625 0.549 -1.268 12 ARG_LSN3_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 -1.332 -0.889 1.092 13 ARG_LSN3_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 -1.286 -1.466 -0.592 14 ARG_LSN3_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.171 0.639 -1.282 15 ARG_LSN3_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.218 1.216 0.402 16 ARG_LSN3_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 1.161 -0.722 1.104 17 ARG_LSN3_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 1.207 -1.299 -0.580 18 ARG_LSN3_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 2.138 1.367 -0.526 19 ARG_LSN3_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 3.009 -1.821 0.590 20 ARG_LSN3_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 4.669 -1.563 0.548 21 ARG_LSN3_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 4.451 1.708 -0.579 22 ARG_LSN3_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 5.503 0.479 -0.128 23 ARG_LSN3_RNH1 H1 H1 H 0 1 N N N 68.828 14.710 89.633 -2.008 1.916 0.586 24 ARG_LSN3_RNH1 H2 H2 H 0 1 N N N 70.234 15.524 89.467 -3.648 1.781 0.499 25 ARG_LSN3_RNH1 H3 H3 H 0 1 N N N 70.214 13.896 89.346 -2.811 0.933 1.637 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LSN3_RNH1 N CA SING N N 1 ARG_LSN3_RNH1 CA C SING N N 2 ARG_LSN3_RNH1 CA CB SING N N 3 ARG_LSN3_RNH1 CA HA SING N N 4 ARG_LSN3_RNH1 C O DOUB N N 5 ARG_LSN3_RNH1 CB CG SING N N 6 ARG_LSN3_RNH1 CB HB2 SING N N 7 ARG_LSN3_RNH1 CB HB3 SING N N 8 ARG_LSN3_RNH1 CG CD SING N N 9 ARG_LSN3_RNH1 CG HG2 SING N N 10 ARG_LSN3_RNH1 CG HG3 SING N N 11 ARG_LSN3_RNH1 CD NE SING N N 12 ARG_LSN3_RNH1 CD HD2 SING N N 13 ARG_LSN3_RNH1 CD HD3 SING N N 14 ARG_LSN3_RNH1 NE CZ SING N N 15 ARG_LSN3_RNH1 NE HE SING N N 16 ARG_LSN3_RNH1 CZ NH1 DOUB N N 17 ARG_LSN3_RNH1 CZ NH2 SING N N 18 ARG_LSN3_RNH1 NH1 HH11 SING N N 19 ARG_LSN3_RNH1 NH1 HH12 SING N N 20 ARG_LSN3_RNH1 NH2 HH21 SING N N 21 ARG_LSN3_RNH1 NH2 HH22 SING N N 22 ARG_LSN3_RNH1 H1 N SING N N 23 ARG_LSN3_RNH1 H2 N SING N N 24 ARG_LSN3_RNH1 H3 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LSN3_RNH1 SMILES ACDLabs 10.04 O=[C-]C(CCCNC(\N)=[NH2+])[NH3+] ARG_LSN3_RNH1 InChI InChI 1.01 InChI=1/C6H13N4O/c7-5(4-11)2-1-3-10-6(8)9/h5H,1-3,7H2,(H4,8,9,10)/q-1/p+2/t5-/m0/s1 ARG_LSN3_RNH1 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH3+])[C-]=O ARG_LSN3_RNH1 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH3+])[C-]=O ARG_LSN3_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H]([C-]=O)[NH3+])CNC(=[NH2+])N ARG_LSN3_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC([C-]=O)[NH3+])CNC(=[NH2+])N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LSN3_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-ammonio-1-oxopentan-1-ide ARG_LSN3_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-oxo-pentan-2-yl]azanium # # data_ASN_LEO2 # _chem_comp.id ASN_LEO2 _chem_comp.name "L-ASPARAGINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N2 O3" _chem_comp.mon_nstd_parent_comp_id ASN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 130.102 _chem_comp.one_letter_code N _chem_comp.three_letter_code ASN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASN_LEO2 N N N -1 1 N N N 15.295 16.641 19.776 0.372 1.665 -0.165 1 ASN_LEO2 CA CA C 0 1 N N S 15.702 17.913 20.397 0.487 0.292 0.345 2 ASN_LEO2 C C C 0 1 N N N 14.630 18.500 21.234 1.877 -0.227 0.081 3 ASN_LEO2 O O O 0 1 N N N 14.949 19.152 22.234 2.242 -1.276 0.583 4 ASN_LEO2 CB CB C 0 1 N N N 16.088 18.882 19.297 -0.534 -0.602 -0.361 5 ASN_LEO2 CG CG C 0 1 N N N 17.262 18.512 18.462 -1.927 -0.157 0.003 6 ASN_LEO2 OD1 OD1 O 0 1 N N N 18.123 17.705 18.780 -2.088 0.782 0.753 7 ASN_LEO2 ND2 ND2 N 0 1 N N N 17.281 19.172 17.284 -2.995 -0.804 -0.505 8 ASN_LEO2 OXT OXT O -1 1 N Y N 13.386 18.353 20.865 2.637 0.403 -0.636 9 ASN_LEO2 H H H 0 1 N N N 15.203 16.766 18.788 0.545 1.697 -1.158 10 ASN_LEO2 HA HA H 0 1 N N N 16.555 17.716 21.063 0.295 0.286 1.418 11 ASN_LEO2 HB2 1HB H 0 1 N N N 15.224 18.966 18.622 -0.398 -0.526 -1.440 12 ASN_LEO2 HB3 2HB H 0 1 N N N 16.375 19.811 19.812 -0.389 -1.636 -0.048 13 ASN_LEO2 HD21 1HD2 H 0 0 N N N 16.497 19.787 17.201 -2.867 -1.555 -1.105 14 ASN_LEO2 HD22 2HD2 H 0 0 N N N 17.988 19.060 16.585 -3.892 -0.518 -0.271 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN_LEO2 N CA SING N N 1 ASN_LEO2 N H SING N N 2 ASN_LEO2 CA C SING N N 3 ASN_LEO2 CA CB SING N N 4 ASN_LEO2 CA HA SING N N 5 ASN_LEO2 C O DOUB N N 6 ASN_LEO2 C OXT SING N N 7 ASN_LEO2 CB CG SING N N 8 ASN_LEO2 CB HB2 SING N N 9 ASN_LEO2 CB HB3 SING N N 10 ASN_LEO2 CG OD1 DOUB N N 11 ASN_LEO2 CG ND2 SING N N 12 ASN_LEO2 ND2 HD21 SING N N 13 ASN_LEO2 ND2 HD22 SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASN_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CC(=O)N ASN_LEO2 InChI InChI 1.01 InChI=1/C4H7N2O3/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H2,6,7)(H,8,9)/q-1/p-1/t2-/m0/s1 ASN_LEO2 SMILES_CANONICAL CACTVS 3.341 NC(=O)C[C@H]([NH-])C([O-])=O ASN_LEO2 SMILES CACTVS 3.341 NC(=O)C[CH]([NH-])C([O-])=O ASN_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH-])C(=O)N ASN_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH-])C(=O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASN_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-4-amino-2-azanidyl-4-oxobutanoate ASN_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-4-amino-2-azanidyl-4-oxo-butanoate # # data_ASN_LEO2H # _chem_comp.id ASN_LEO2H _chem_comp.name "L-ASPARAGINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N2 O3" _chem_comp.mon_nstd_parent_comp_id ASN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.110 _chem_comp.one_letter_code N _chem_comp.three_letter_code ASN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASN_LEO2H N N N -1 1 N N N 15.295 16.641 19.776 0.292 1.707 -0.062 1 ASN_LEO2H CA CA C 0 1 N N S 15.702 17.913 20.397 0.453 0.306 0.349 2 ASN_LEO2H C C C 0 1 N N N 14.630 18.500 21.234 1.854 -0.152 0.033 3 ASN_LEO2H O O O 0 1 N N N 14.949 19.152 22.234 2.516 0.446 -0.781 4 ASN_LEO2H CB CB C 0 1 N N N 16.088 18.882 19.297 -0.551 -0.566 -0.408 5 ASN_LEO2H CG CG C 0 1 N N N 17.262 18.512 18.462 -1.952 -0.189 0.001 6 ASN_LEO2H OD1 OD1 O 0 1 N N N 18.123 17.705 18.780 -2.130 0.690 0.817 7 ASN_LEO2H ND2 ND2 N 0 1 N N N 17.281 19.172 17.284 -3.007 -0.830 -0.540 8 ASN_LEO2H OXT OXT O 0 1 N Y N 13.386 18.353 20.865 2.365 -1.225 0.658 9 ASN_LEO2H H H H 0 1 N N N 15.203 16.766 18.788 0.452 1.814 -1.053 10 ASN_LEO2H HA HA H 0 1 N N N 16.555 17.716 21.063 0.275 0.219 1.420 11 ASN_LEO2H HB2 1HB H 0 1 N N N 15.224 18.966 18.622 -0.432 -0.411 -1.480 12 ASN_LEO2H HB3 2HB H 0 1 N N N 16.375 19.811 19.812 -0.373 -1.615 -0.170 13 ASN_LEO2H HD21 1HD2 H 0 0 N N N 16.497 19.787 17.201 -2.865 -1.533 -1.193 14 ASN_LEO2H HD22 2HD2 H 0 0 N N N 17.988 19.060 16.585 -3.909 -0.587 -0.277 15 ASN_LEO2H HXT HXT H 0 1 N Y N 12.819 18.813 21.473 3.268 -1.481 0.422 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN_LEO2H N CA SING N N 1 ASN_LEO2H N H SING N N 2 ASN_LEO2H CA C SING N N 3 ASN_LEO2H CA CB SING N N 4 ASN_LEO2H CA HA SING N N 5 ASN_LEO2H C O DOUB N N 6 ASN_LEO2H C OXT SING N N 7 ASN_LEO2H CB CG SING N N 8 ASN_LEO2H CB HB2 SING N N 9 ASN_LEO2H CB HB3 SING N N 10 ASN_LEO2H CG OD1 DOUB N N 11 ASN_LEO2H CG ND2 SING N N 12 ASN_LEO2H ND2 HD21 SING N N 13 ASN_LEO2H ND2 HD22 SING N N 14 ASN_LEO2H OXT HXT SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASN_LEO2H SMILES ACDLabs 10.04 O=C(N)CC([NH-])C(=O)O ASN_LEO2H InChI InChI 1.01 InChI=1/C4H7N2O3/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H2,6,7)(H,8,9)/q-1/t2-/m0/s1 ASN_LEO2H SMILES_CANONICAL CACTVS 3.341 NC(=O)C[C@H]([NH-])C(O)=O ASN_LEO2H SMILES CACTVS 3.341 NC(=O)C[CH]([NH-])C(O)=O ASN_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)[NH-])C(=O)N ASN_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)[NH-])C(=O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASN_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-3-amino-1-carboxy-3-oxopropyl]azanide ASN_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-amino-1-hydroxy-1,4-dioxo-butan-2-yl]azanide # # data_ASN_LFOH # _chem_comp.id ASN_LFOH _chem_comp.name "L-ASPARAGINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N2 O3" _chem_comp.mon_nstd_parent_comp_id ASN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.118 _chem_comp.one_letter_code N _chem_comp.three_letter_code ASN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASN_LFOH N N N 0 1 N N N 15.295 16.641 19.776 -0.293 1.686 0.094 1 ASN_LFOH CA CA C 0 1 N N S 15.702 17.913 20.397 -0.448 0.292 -0.340 2 ASN_LFOH C C C 0 1 N N N 14.630 18.500 21.234 -1.846 -0.179 -0.031 3 ASN_LFOH O O O 0 1 N N N 14.949 19.152 22.234 -2.510 0.402 0.794 4 ASN_LFOH CB CB C 0 1 N N N 16.088 18.882 19.297 0.562 -0.588 0.401 5 ASN_LFOH CG CG C 0 1 N N N 17.262 18.512 18.462 1.960 -0.197 -0.002 6 ASN_LFOH OD1 OD1 O 0 1 N N N 18.123 17.705 18.780 2.132 0.697 -0.804 7 ASN_LFOH ND2 ND2 N 0 1 N N N 17.281 19.172 17.284 3.019 -0.841 0.527 8 ASN_LFOH OXT OXT O 0 1 N Y N 13.386 18.353 20.865 -2.353 -1.243 -0.673 9 ASN_LFOH HA HA H 0 1 N N N 16.555 17.716 21.063 -0.270 0.223 -1.413 10 ASN_LFOH HB2 1HB H 0 1 N N N 15.224 18.966 18.622 0.442 -0.451 1.476 11 ASN_LFOH HB3 2HB H 0 1 N N N 16.375 19.811 19.812 0.389 -1.633 0.146 12 ASN_LFOH HD21 1HD2 H 0 0 N N N 16.497 19.787 17.201 2.881 -1.556 1.168 13 ASN_LFOH HD22 2HD2 H 0 0 N N N 17.988 19.060 16.585 3.919 -0.590 0.268 14 ASN_LFOH HXT HXT H 0 1 N Y N 12.819 18.813 21.473 -3.254 -1.508 -0.441 15 ASN_LFOH H1 H1 H 0 1 N N N 15.203 16.766 18.788 -0.904 2.297 -0.427 16 ASN_LFOH H2 H2 H 0 1 N N N 15.988 15.944 19.960 -0.453 1.776 1.086 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN_LFOH N CA SING N N 1 ASN_LFOH CA C SING N N 2 ASN_LFOH CA CB SING N N 3 ASN_LFOH CA HA SING N N 4 ASN_LFOH C O DOUB N N 5 ASN_LFOH C OXT SING N N 6 ASN_LFOH CB CG SING N N 7 ASN_LFOH CB HB2 SING N N 8 ASN_LFOH CB HB3 SING N N 9 ASN_LFOH CG OD1 DOUB N N 10 ASN_LFOH CG ND2 SING N N 11 ASN_LFOH ND2 HD21 SING N N 12 ASN_LFOH ND2 HD22 SING N N 13 ASN_LFOH OXT HXT SING N N 14 ASN_LFOH H1 N SING N N 15 ASN_LFOH H2 N SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASN_LFOH SMILES ACDLabs 10.04 O=C(N)CC(N)C(=O)O ASN_LFOH InChI InChI 1.01 InChI=1/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1 ASN_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CC(N)=O)C(O)=O ASN_LFOH SMILES CACTVS 3.341 N[CH](CC(N)=O)C(O)=O ASN_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)N)C(=O)N ASN_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)N)C(=O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASN_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-asparagine ASN_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2,4-diamino-4-oxo-butanoic acid" # # data_ASN_LFZW # _chem_comp.id ASN_LFZW _chem_comp.name "L-ASPARAGINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N2 O3" _chem_comp.mon_nstd_parent_comp_id ASN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.118 _chem_comp.one_letter_code N _chem_comp.three_letter_code ASN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASN_LFZW N N N 1 1 N N N 15.295 16.641 19.776 -0.373 1.630 0.183 1 ASN_LFZW CA CA C 0 1 N N S 15.702 17.913 20.397 -0.485 0.262 -0.340 2 ASN_LFZW C C C 0 1 N N N 14.630 18.500 21.234 -1.873 -0.264 -0.080 3 ASN_LFZW O O O 0 1 N N N 14.949 19.152 22.234 -2.235 -1.309 -0.592 4 ASN_LFZW CB CB C 0 1 N N N 16.088 18.882 19.297 0.540 -0.636 0.357 5 ASN_LFZW CG CG C 0 1 N N N 17.262 18.512 18.462 1.931 -0.184 -0.004 6 ASN_LFZW OD1 OD1 O 0 1 N N N 18.123 17.705 18.780 2.088 0.763 -0.744 7 ASN_LFZW ND2 ND2 N 0 1 N N N 17.281 19.172 17.284 3.001 -0.832 0.498 8 ASN_LFZW OXT OXT O -1 1 N Y N 13.386 18.353 20.865 -2.634 0.356 0.644 9 ASN_LFZW HA HA H 0 1 N N N 16.555 17.716 21.063 -0.293 0.266 -1.413 10 ASN_LFZW HB2 1HB H 0 1 N N N 15.224 18.966 18.622 0.405 -0.571 1.436 11 ASN_LFZW HB3 2HB H 0 1 N N N 16.375 19.811 19.812 0.398 -1.668 0.034 12 ASN_LFZW HD21 1HD2 H 0 0 N N N 16.497 19.787 17.201 2.876 -1.589 1.091 13 ASN_LFZW HD22 2HD2 H 0 0 N N N 17.988 19.060 16.585 3.897 -0.541 0.266 14 ASN_LFZW H1 H1 H 0 1 N N N 15.203 16.766 18.788 0.557 1.982 0.009 15 ASN_LFZW H2 H2 H 0 1 N N N 15.988 15.944 19.960 -1.048 2.222 -0.276 16 ASN_LFZW H3 H3 H 0 1 N N N 14.418 16.349 20.158 -0.550 1.625 1.177 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN_LFZW N CA SING N N 1 ASN_LFZW CA C SING N N 2 ASN_LFZW CA CB SING N N 3 ASN_LFZW CA HA SING N N 4 ASN_LFZW C O DOUB N N 5 ASN_LFZW C OXT SING N N 6 ASN_LFZW CB CG SING N N 7 ASN_LFZW CB HB2 SING N N 8 ASN_LFZW CB HB3 SING N N 9 ASN_LFZW CG OD1 DOUB N N 10 ASN_LFZW CG ND2 SING N N 11 ASN_LFZW ND2 HD21 SING N N 12 ASN_LFZW ND2 HD22 SING N N 13 ASN_LFZW H1 N SING N N 14 ASN_LFZW H2 N SING N N 15 ASN_LFZW H3 N SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASN_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CC(=O)N ASN_LFZW InChI InChI 1.01 InChI=1/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1 ASN_LFZW SMILES_CANONICAL CACTVS 3.341 NC(=O)C[C@H]([NH3+])C([O-])=O ASN_LFZW SMILES CACTVS 3.341 NC(=O)C[CH]([NH3+])C([O-])=O ASN_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH3+])C(=O)N ASN_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH3+])C(=O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASN_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-4-amino-2-ammonio-4-oxobutanoate ASN_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-4-amino-2-azaniumyl-4-oxo-butanoate # # data_ASN_LL # _chem_comp.id ASN_LL _chem_comp.name "L-ASPARAGINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N2 O2" _chem_comp.mon_nstd_parent_comp_id ASN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 114.103 _chem_comp.one_letter_code N _chem_comp.three_letter_code ASN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASN_LL N N N -1 1 N N N 15.295 16.641 19.776 0.832 1.249 -0.692 1 ASN_LL CA CA C 0 1 N N S 15.702 17.913 20.397 0.803 0.068 0.181 2 ASN_LL C C C -1 1 N N N 14.630 18.500 21.234 2.082 -0.712 0.014 3 ASN_LL O O O 0 1 N N N 14.949 19.152 22.234 3.143 -0.192 0.262 4 ASN_LL CB CB C 0 1 N N N 16.088 18.882 19.297 -0.387 -0.817 -0.197 5 ASN_LL CG CG C 0 1 N N N 17.262 18.512 18.462 -1.671 -0.080 0.086 6 ASN_LL OD1 OD1 O 0 1 N N N 18.123 17.705 18.780 -1.637 1.042 0.546 7 ASN_LL ND2 ND2 N 0 1 N N N 17.281 19.172 17.284 -2.856 -0.668 -0.170 8 ASN_LL H H H 0 1 N N N 15.203 16.766 18.788 0.923 0.980 -1.660 9 ASN_LL HA HA H 0 1 N N N 16.555 17.716 21.063 0.704 0.385 1.219 10 ASN_LL HB2 1HB H 0 1 N N N 15.224 18.966 18.622 -0.335 -1.062 -1.258 11 ASN_LL HB3 2HB H 0 1 N N N 16.375 19.811 19.812 -0.358 -1.735 0.390 12 ASN_LL HD21 1HD2 H 0 0 N N N 16.497 19.787 17.201 -2.883 -1.565 -0.537 13 ASN_LL HD22 2HD2 H 0 0 N N N 17.988 19.060 16.585 -3.682 -0.194 0.012 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN_LL N CA SING N N 1 ASN_LL N H SING N N 2 ASN_LL CA C SING N N 3 ASN_LL CA CB SING N N 4 ASN_LL CA HA SING N N 5 ASN_LL C O DOUB N N 6 ASN_LL CB CG SING N N 7 ASN_LL CB HB2 SING N N 8 ASN_LL CB HB3 SING N N 9 ASN_LL CG OD1 DOUB N N 10 ASN_LL CG ND2 SING N N 11 ASN_LL ND2 HD21 SING N N 12 ASN_LL ND2 HD22 SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASN_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CC(=O)N ASN_LL InChI InChI 1.01 InChI=1/C4H6N2O2/c5-3(2-7)1-4(6)8/h3,5H,1H2,(H2,6,8)/q-2/t3-/m0/s1 ASN_LL SMILES_CANONICAL CACTVS 3.341 NC(=O)C[C@H]([NH-])[C-]=O ASN_LL SMILES CACTVS 3.341 NC(=O)C[CH]([NH-])[C-]=O ASN_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH-])C(=O)N ASN_LL SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH-])C(=O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASN_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(2-amino-2-oxoethyl)-2-oxoethan-2-idyl]azanide ASN_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-amino-1,4-dioxo-butan-2-yl]azanide # # data_ASN_LSN3 # _chem_comp.id ASN_LSN3 _chem_comp.name "L-ASPARAGINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N2 O2" _chem_comp.mon_nstd_parent_comp_id ASN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 116.119 _chem_comp.one_letter_code N _chem_comp.three_letter_code ASN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASN_LSN3 N N N 1 1 N N N 15.295 16.641 19.776 -0.829 1.233 0.642 1 ASN_LSN3 CA CA C 0 1 N N S 15.702 17.913 20.397 -0.789 0.024 -0.192 2 ASN_LSN3 C C C -1 1 N N N 14.630 18.500 21.234 -2.062 -0.760 -0.001 3 ASN_LSN3 O O O 0 1 N N N 14.949 19.152 22.234 -3.127 -0.256 -0.268 4 ASN_LSN3 CB CB C 0 1 N N N 16.088 18.882 19.297 0.407 -0.838 0.216 5 ASN_LSN3 CG CG C 0 1 N N N 17.262 18.512 18.462 1.685 -0.101 -0.089 6 ASN_LSN3 OD1 OD1 O 0 1 N N N 18.123 17.705 18.780 1.644 1.005 -0.585 7 ASN_LSN3 ND2 ND2 N 0 1 N N N 17.281 19.172 17.284 2.875 -0.671 0.188 8 ASN_LSN3 HA HA H 0 1 N N N 16.555 17.716 21.063 -0.691 0.309 -1.240 9 ASN_LSN3 HB2 1HB H 0 1 N N N 15.224 18.966 18.622 0.355 -1.049 1.284 10 ASN_LSN3 HB3 2HB H 0 1 N N N 16.375 19.811 19.812 0.386 -1.775 -0.340 11 ASN_LSN3 HD21 1HD2 H 0 0 N N N 16.497 19.787 17.201 2.908 -1.556 0.584 12 ASN_LSN3 HD22 2HD2 H 0 0 N N N 17.988 19.060 16.585 3.698 -0.197 -0.009 13 ASN_LSN3 H1 H1 H 0 1 N N N 15.203 16.766 18.788 0.023 1.758 0.515 14 ASN_LSN3 H2 H2 H 0 1 N N N 15.988 15.944 19.960 -1.617 1.801 0.373 15 ASN_LSN3 H3 H3 H 0 1 N N N 14.418 16.349 20.158 -0.919 0.969 1.612 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN_LSN3 N CA SING N N 1 ASN_LSN3 CA C SING N N 2 ASN_LSN3 CA CB SING N N 3 ASN_LSN3 CA HA SING N N 4 ASN_LSN3 C O DOUB N N 5 ASN_LSN3 CB CG SING N N 6 ASN_LSN3 CB HB2 SING N N 7 ASN_LSN3 CB HB3 SING N N 8 ASN_LSN3 CG OD1 DOUB N N 9 ASN_LSN3 CG ND2 SING N N 10 ASN_LSN3 ND2 HD21 SING N N 11 ASN_LSN3 ND2 HD22 SING N N 12 ASN_LSN3 H1 N SING N N 13 ASN_LSN3 H2 N SING N N 14 ASN_LSN3 H3 N SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASN_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CC(=O)N ASN_LSN3 InChI InChI 1.01 InChI=1/C4H7N2O2/c5-3(2-7)1-4(6)8/h3H,1,5H2,(H2,6,8)/q-1/p+1/t3-/m0/s1 ASN_LSN3 SMILES_CANONICAL CACTVS 3.341 NC(=O)C[C@H]([NH3+])[C-]=O ASN_LSN3 SMILES CACTVS 3.341 NC(=O)C[CH]([NH3+])[C-]=O ASN_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH3+])C(=O)N ASN_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH3+])C(=O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASN_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-4-amino-2-ammonio-1,4-dioxobutan-1-ide ASN_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-amino-1,4-dioxo-butan-2-yl]azanium # # data_ASP_LEO2 # _chem_comp.id ASP_LEO2 _chem_comp.name "L-ASPARTIC ACID C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H5 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.087 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LEO2 N N N -1 1 N N N 33.487 17.736 39.094 0.404 1.658 -0.208 1 ASP_LEO2 CA CA C 0 1 N N S 34.909 17.506 38.709 0.512 0.298 0.337 2 ASP_LEO2 C C C 0 1 N N N 34.993 16.527 37.537 1.898 -0.235 0.086 3 ASP_LEO2 O O O 0 1 N N N 36.106 16.031 37.261 2.721 0.454 -0.493 4 ASP_LEO2 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.514 -0.608 -0.347 5 ASP_LEO2 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.905 -0.147 0.005 6 ASP_LEO2 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -2.060 0.809 0.728 7 ASP_LEO2 OD2 OD2 O 0 1 N N N 34.327 14.999 39.631 -2.972 -0.797 -0.485 8 ASP_LEO2 OXT OXT O -1 1 N Y N 33.935 16.265 36.913 2.198 -1.355 0.463 9 ASP_LEO2 H H H 0 1 N N N 33.415 17.787 40.090 0.578 1.664 -1.202 10 ASP_LEO2 HA HA H 0 1 N N N 35.356 18.461 38.395 0.319 0.321 1.410 11 ASP_LEO2 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.378 -0.561 -1.427 12 ASP_LEO2 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.376 -1.635 -0.007 13 ASP_LEO2 HD2 HD2 H 0 1 N N N 34.155 14.130 39.974 -3.844 -0.464 -0.232 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LEO2 N CA SING N N 1 ASP_LEO2 N H SING N N 2 ASP_LEO2 CA C SING N N 3 ASP_LEO2 CA CB SING N N 4 ASP_LEO2 CA HA SING N N 5 ASP_LEO2 C O DOUB N N 6 ASP_LEO2 C OXT SING N N 7 ASP_LEO2 CB CG SING N N 8 ASP_LEO2 CB HB2 SING N N 9 ASP_LEO2 CB HB3 SING N N 10 ASP_LEO2 CG OD1 DOUB N N 11 ASP_LEO2 CG OD2 SING N N 12 ASP_LEO2 OD2 HD2 SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CC(=O)O ASP_LEO2 InChI InChI 1.01 InChI=1/C4H6NO4/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/q-1/p-1/t2-/m0/s1 ASP_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CC(O)=O)C([O-])=O ASP_LEO2 SMILES CACTVS 3.341 [NH-][CH](CC(O)=O)C([O-])=O ASP_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH-])C(=O)O ASP_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH-])C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-carboxypropanoate ASP_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-4-hydroxy-4-oxo-butanoate # # data_ASP_LEO2_DHD2 # _chem_comp.id ASP_LEO2_DHD2 _chem_comp.name "L-ASPARTIC ACID-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OD2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H4 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 130.079 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LEO2_DHD2 N N N -1 1 N N N 33.487 17.736 39.094 0.329 1.663 -0.117 1 ASP_LEO2_DHD2 CA CA C 0 1 N N S 34.909 17.506 38.709 0.461 0.276 0.350 2 ASP_LEO2_DHD2 C C C 0 1 N N N 34.993 16.527 37.537 1.861 -0.213 0.082 3 ASP_LEO2_DHD2 O O O 0 1 N N N 36.106 16.031 37.261 2.237 -1.272 0.554 4 ASP_LEO2_DHD2 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.540 -0.610 -0.396 5 ASP_LEO2_DHD2 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.943 -0.199 -0.032 6 ASP_LEO2_DHD2 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -2.126 0.718 0.751 7 ASP_LEO2_DHD2 OD2 OD2 O -1 1 N N N 34.327 14.999 39.631 -2.895 -0.783 -0.520 8 ASP_LEO2_DHD2 OXT OXT O -1 1 N Y N 33.935 16.265 36.913 2.617 0.451 -0.606 9 ASP_LEO2_DHD2 H H H 0 1 N N N 33.415 17.787 40.090 0.512 1.730 -1.107 10 ASP_LEO2_DHD2 HA HA H 0 1 N N N 35.356 18.461 38.395 0.259 0.232 1.420 11 ASP_LEO2_DHD2 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.395 -0.497 -1.470 12 ASP_LEO2_DHD2 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.382 -1.651 -0.115 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LEO2_DHD2 N CA SING N N 1 ASP_LEO2_DHD2 N H SING N N 2 ASP_LEO2_DHD2 CA C SING N N 3 ASP_LEO2_DHD2 CA CB SING N N 4 ASP_LEO2_DHD2 CA HA SING N N 5 ASP_LEO2_DHD2 C O DOUB N N 6 ASP_LEO2_DHD2 C OXT SING N N 7 ASP_LEO2_DHD2 CB CG SING N N 8 ASP_LEO2_DHD2 CB HB2 SING N N 9 ASP_LEO2_DHD2 CB HB3 SING N N 10 ASP_LEO2_DHD2 CG OD1 DOUB N N 11 ASP_LEO2_DHD2 CG OD2 SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LEO2_DHD2 SMILES ACDLabs 10.04 [O-]C(=O)CC([NH-])C([O-])=O ASP_LEO2_DHD2 InChI InChI 1.01 InChI=1/C4H6NO4/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/q-1/p-2/t2-/m0/s1 ASP_LEO2_DHD2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CC([O-])=O)C([O-])=O ASP_LEO2_DHD2 SMILES CACTVS 3.341 [NH-][CH](CC([O-])=O)C([O-])=O ASP_LEO2_DHD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH-])C(=O)[O-] ASP_LEO2_DHD2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH-])C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LEO2_DHD2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidylbutanedioate ASP_LEO2_DHD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidylbutanedioate # # data_ASP_LEO2H # _chem_comp.id ASP_LEO2H _chem_comp.name "L-ASPARTIC ACID C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.095 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LEO2H N N N -1 1 N N N 33.487 17.736 39.094 0.316 1.708 -0.032 1 ASP_LEO2H CA CA C 0 1 N N S 34.909 17.506 38.709 0.475 0.299 0.354 2 ASP_LEO2H C C C 0 1 N N N 34.993 16.527 37.537 1.876 -0.154 0.031 3 ASP_LEO2H O O O 0 1 N N N 36.106 16.031 37.261 2.539 0.459 -0.772 4 ASP_LEO2H CB CB C 0 1 N N N 35.682 16.954 39.915 -0.529 -0.558 -0.420 5 ASP_LEO2H CG CG C 0 1 N N N 35.231 15.544 40.306 -1.929 -0.187 -0.005 6 ASP_LEO2H OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -2.106 0.674 0.824 7 ASP_LEO2H OD2 OD2 O 0 1 N N N 34.327 14.999 39.631 -2.980 -0.814 -0.557 8 ASP_LEO2H OXT OXT O 0 1 N Y N 33.935 16.265 36.913 2.386 -1.238 0.636 9 ASP_LEO2H H H H 0 1 N N N 33.415 17.787 40.090 0.477 1.833 -1.020 10 ASP_LEO2H HA HA H 0 1 N N N 35.356 18.461 38.395 0.296 0.193 1.423 11 ASP_LEO2H HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.408 -0.383 -1.489 12 ASP_LEO2H HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.352 -1.611 -0.202 13 ASP_LEO2H HD2 HD2 H 0 1 N N N 34.155 14.130 39.974 -3.859 -0.542 -0.259 14 ASP_LEO2H HXT HXT H 0 1 N Y N 34.122 15.645 36.218 3.289 -1.490 0.396 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LEO2H N CA SING N N 1 ASP_LEO2H N H SING N N 2 ASP_LEO2H CA C SING N N 3 ASP_LEO2H CA CB SING N N 4 ASP_LEO2H CA HA SING N N 5 ASP_LEO2H C O DOUB N N 6 ASP_LEO2H C OXT SING N N 7 ASP_LEO2H CB CG SING N N 8 ASP_LEO2H CB HB2 SING N N 9 ASP_LEO2H CB HB3 SING N N 10 ASP_LEO2H CG OD1 DOUB N N 11 ASP_LEO2H CG OD2 SING N N 12 ASP_LEO2H OD2 HD2 SING N N 13 ASP_LEO2H OXT HXT SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LEO2H SMILES ACDLabs 10.04 O=C(O)CC([NH-])C(=O)O ASP_LEO2H InChI InChI 1.01 InChI=1/C4H6NO4/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/q-1/t2-/m0/s1 ASP_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CC(O)=O)C(O)=O ASP_LEO2H SMILES CACTVS 3.341 [NH-][CH](CC(O)=O)C(O)=O ASP_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)[NH-])C(=O)O ASP_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)[NH-])C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1,2-dicarboxyethyl]azanide ASP_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1,4-dihydroxy-1,4-dioxo-butan-2-yl]azanide # # data_ASP_LEO2H_DHD2 # _chem_comp.id ASP_LEO2H_DHD2 _chem_comp.name "L-ASPARTIC ACID-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OD2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H5 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.087 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LEO2H_DHD2 N N N -1 1 N N N 33.487 17.736 39.094 0.248 1.700 -0.005 1 ASP_LEO2H_DHD2 CA CA C 0 1 N N S 34.909 17.506 38.709 0.426 0.287 0.354 2 ASP_LEO2H_DHD2 C C C 0 1 N N N 34.993 16.527 37.537 1.837 -0.138 0.037 3 ASP_LEO2H_DHD2 O O O 0 1 N N N 36.106 16.031 37.261 2.498 0.501 -0.747 4 ASP_LEO2H_DHD2 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.557 -0.570 -0.446 5 ASP_LEO2H_DHD2 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.967 -0.230 -0.038 6 ASP_LEO2H_DHD2 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -2.167 0.620 0.814 7 ASP_LEO2H_DHD2 OD2 OD2 O -1 1 N N N 34.327 14.999 39.631 -2.908 -0.804 -0.560 8 ASP_LEO2H_DHD2 OXT OXT O 0 1 N Y N 33.935 16.265 36.913 2.358 -1.226 0.625 9 ASP_LEO2H_DHD2 H H H 0 1 N N N 33.415 17.787 40.090 0.417 1.848 -0.988 10 ASP_LEO2H_DHD2 HA HA H 0 1 N N N 35.356 18.461 38.395 0.238 0.156 1.420 11 ASP_LEO2H_DHD2 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.429 -0.372 -1.510 12 ASP_LEO2H_DHD2 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.365 -1.624 -0.246 13 ASP_LEO2H_DHD2 HXT HXT H 0 1 N Y N 34.122 15.645 36.218 3.267 -1.459 0.390 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LEO2H_DHD2 N CA SING N N 1 ASP_LEO2H_DHD2 N H SING N N 2 ASP_LEO2H_DHD2 CA C SING N N 3 ASP_LEO2H_DHD2 CA CB SING N N 4 ASP_LEO2H_DHD2 CA HA SING N N 5 ASP_LEO2H_DHD2 C O DOUB N N 6 ASP_LEO2H_DHD2 C OXT SING N N 7 ASP_LEO2H_DHD2 CB CG SING N N 8 ASP_LEO2H_DHD2 CB HB2 SING N N 9 ASP_LEO2H_DHD2 CB HB3 SING N N 10 ASP_LEO2H_DHD2 CG OD1 DOUB N N 11 ASP_LEO2H_DHD2 CG OD2 SING N N 12 ASP_LEO2H_DHD2 OXT HXT SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LEO2H_DHD2 SMILES ACDLabs 10.04 [O-]C(=O)CC([NH-])C(=O)O ASP_LEO2H_DHD2 InChI InChI 1.01 InChI=1/C4H6NO4/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/q-1/p-1/t2-/m0/s1 ASP_LEO2H_DHD2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CC([O-])=O)C(O)=O ASP_LEO2H_DHD2 SMILES CACTVS 3.341 [NH-][CH](CC([O-])=O)C(O)=O ASP_LEO2H_DHD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)[NH-])C(=O)[O-] ASP_LEO2H_DHD2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)[NH-])C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LEO2H_DHD2 "SYSTEMATIC NAME" ACDLabs 10.04 (3S)-3-azanidyl-3-carboxypropanoate ASP_LEO2H_DHD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (3S)-3-azanidyl-4-hydroxy-4-oxo-butanoate # # data_ASP_LFOH # _chem_comp.id ASP_LFOH _chem_comp.name "L-ASPARTIC ACID FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 133.103 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LFOH N N N 0 1 N N N 33.487 17.736 39.094 0.315 1.693 -0.046 1 ASP_LFOH CA CA C 0 1 N N S 34.909 17.506 38.709 0.479 0.288 0.350 2 ASP_LFOH C C C 0 1 N N N 34.993 16.527 37.537 1.881 -0.164 0.031 3 ASP_LFOH O O O 0 1 N N N 36.106 16.031 37.261 2.543 0.445 -0.776 4 ASP_LFOH CB CB C 0 1 N N N 35.682 16.954 39.915 -0.522 -0.578 -0.417 5 ASP_LFOH CG CG C 0 1 N N N 35.231 15.544 40.306 -1.924 -0.208 -0.006 6 ASP_LFOH OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -2.104 0.658 0.817 7 ASP_LFOH OD2 OD2 O 0 1 N N N 34.327 14.999 39.631 -2.974 -0.842 -0.553 8 ASP_LFOH OXT OXT O 0 1 N Y N 33.935 16.265 36.913 2.394 -1.242 0.644 9 ASP_LFOH HA HA H 0 1 N N N 35.356 18.461 38.395 0.300 0.189 1.420 10 ASP_LFOH HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.402 -0.411 -1.488 11 ASP_LFOH HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.342 -1.629 -0.191 12 ASP_LFOH HD2 HD2 H 0 1 N N N 34.155 14.130 39.974 -3.853 -0.571 -0.258 13 ASP_LFOH HXT HXT H 0 1 N Y N 34.122 15.645 36.218 3.298 -1.493 0.407 14 ASP_LFOH H1 H1 H 0 1 N N N 33.415 17.787 40.090 0.476 1.811 -1.035 15 ASP_LFOH H2 H2 H 0 1 N N N 33.168 18.594 38.692 -0.596 2.039 0.216 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LFOH N CA SING N N 1 ASP_LFOH CA C SING N N 2 ASP_LFOH CA CB SING N N 3 ASP_LFOH CA HA SING N N 4 ASP_LFOH C O DOUB N N 5 ASP_LFOH C OXT SING N N 6 ASP_LFOH CB CG SING N N 7 ASP_LFOH CB HB2 SING N N 8 ASP_LFOH CB HB3 SING N N 9 ASP_LFOH CG OD1 DOUB N N 10 ASP_LFOH CG OD2 SING N N 11 ASP_LFOH OD2 HD2 SING N N 12 ASP_LFOH OXT HXT SING N N 13 ASP_LFOH H1 N SING N N 14 ASP_LFOH H2 N SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LFOH SMILES ACDLabs 10.04 O=C(O)CC(N)C(=O)O ASP_LFOH InChI InChI 1.01 InChI=1/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/t2-/m0/s1 ASP_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CC(O)=O)C(O)=O ASP_LFOH SMILES CACTVS 3.341 N[CH](CC(O)=O)C(O)=O ASP_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)N)C(=O)O ASP_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)N)C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 "L-aspartic acid" ASP_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-aminobutanedioic acid" # # data_ASP_LFOH_DHD2 # _chem_comp.id ASP_LFOH_DHD2 _chem_comp.name "L-ASPARTIC ACID-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED OD2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.095 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LFOH_DHD2 N N N 0 1 N N N 33.487 17.736 39.094 0.248 1.686 -0.020 1 ASP_LFOH_DHD2 CA CA C 0 1 N N S 34.909 17.506 38.709 0.430 0.276 0.350 2 ASP_LFOH_DHD2 C C C 0 1 N N N 34.993 16.527 37.537 1.842 -0.147 0.037 3 ASP_LFOH_DHD2 O O O 0 1 N N N 36.106 16.031 37.261 2.502 0.487 -0.752 4 ASP_LFOH_DHD2 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.550 -0.591 -0.443 5 ASP_LFOH_DHD2 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.961 -0.252 -0.039 6 ASP_LFOH_DHD2 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -2.165 0.604 0.806 7 ASP_LFOH_DHD2 OD2 OD2 O -1 1 N N N 34.327 14.999 39.631 -2.900 -0.834 -0.556 8 ASP_LFOH_DHD2 OXT OXT O 0 1 N Y N 33.935 16.265 36.913 2.368 -1.228 0.635 9 ASP_LFOH_DHD2 HA HA H 0 1 N N N 35.356 18.461 38.395 0.243 0.154 1.417 10 ASP_LFOH_DHD2 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.422 -0.402 -1.509 11 ASP_LFOH_DHD2 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.355 -1.643 -0.235 12 ASP_LFOH_DHD2 HXT HXT H 0 1 N Y N 34.122 15.645 36.218 3.277 -1.460 0.402 13 ASP_LFOH_DHD2 H1 H1 H 0 1 N N N 33.415 17.787 40.090 0.416 1.825 -1.005 14 ASP_LFOH_DHD2 H2 H2 H 0 1 N N N 33.168 18.594 38.692 -0.671 2.012 0.239 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LFOH_DHD2 N CA SING N N 1 ASP_LFOH_DHD2 CA C SING N N 2 ASP_LFOH_DHD2 CA CB SING N N 3 ASP_LFOH_DHD2 CA HA SING N N 4 ASP_LFOH_DHD2 C O DOUB N N 5 ASP_LFOH_DHD2 C OXT SING N N 6 ASP_LFOH_DHD2 CB CG SING N N 7 ASP_LFOH_DHD2 CB HB2 SING N N 8 ASP_LFOH_DHD2 CB HB3 SING N N 9 ASP_LFOH_DHD2 CG OD1 DOUB N N 10 ASP_LFOH_DHD2 CG OD2 SING N N 11 ASP_LFOH_DHD2 OXT HXT SING N N 12 ASP_LFOH_DHD2 H1 N SING N N 13 ASP_LFOH_DHD2 H2 N SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LFOH_DHD2 SMILES ACDLabs 10.04 [O-]C(=O)CC(N)C(=O)O ASP_LFOH_DHD2 InChI InChI 1.01 InChI=1/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/p-1/t2-/m0/s1 ASP_LFOH_DHD2 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CC([O-])=O)C(O)=O ASP_LFOH_DHD2 SMILES CACTVS 3.341 N[CH](CC([O-])=O)C(O)=O ASP_LFOH_DHD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)N)C(=O)[O-] ASP_LFOH_DHD2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)N)C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LFOH_DHD2 "SYSTEMATIC NAME" ACDLabs 10.04 (3S)-3-amino-3-carboxypropanoate ASP_LFOH_DHD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (3S)-3-amino-4-hydroxy-4-oxo-butanoate # # data_ASP_LFZW # _chem_comp.id ASP_LFZW _chem_comp.name "L-ASPARTIC ACID FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 133.103 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LFZW N N N 1 1 N N N 33.487 17.736 39.094 -0.396 1.632 0.161 1 ASP_LFZW CA CA C 0 1 N N S 34.909 17.506 38.709 -0.507 0.257 -0.343 2 ASP_LFZW C C C 0 1 N N N 34.993 16.527 37.537 -1.895 -0.266 -0.076 3 ASP_LFZW O O O 0 1 N N N 36.106 16.031 37.261 -2.256 -1.318 -0.574 4 ASP_LFZW CB CB C 0 1 N N N 35.682 16.954 39.915 0.517 -0.631 0.367 5 ASP_LFZW CG CG C 0 1 N N N 35.231 15.544 40.306 1.909 -0.183 0.002 6 ASP_LFZW OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 2.066 0.750 -0.750 7 ASP_LFZW OD2 OD2 O 0 1 N N N 34.327 14.999 39.631 2.975 -0.821 0.511 8 ASP_LFZW OXT OXT O -1 1 N Y N 33.935 16.265 36.913 -2.657 0.364 0.638 9 ASP_LFZW HA HA H 0 1 N N N 35.356 18.461 38.395 -0.315 0.246 -1.416 10 ASP_LFZW HB2 1HB H 0 1 N N N 36.751 16.919 39.657 0.382 -0.550 1.446 11 ASP_LFZW HB3 2HB H 0 1 N N N 35.488 17.618 40.770 0.376 -1.666 0.059 12 ASP_LFZW HD2 HD2 H 0 1 N N N 34.155 14.130 39.974 3.847 -0.498 0.247 13 ASP_LFZW H1 H1 H 0 1 N N N 33.415 17.787 40.090 0.534 1.982 -0.018 14 ASP_LFZW H2 H2 H 0 1 N N N 33.168 18.594 38.692 -1.071 2.217 -0.308 15 ASP_LFZW H3 H3 H 0 1 N N N 32.925 16.980 38.758 -0.574 1.642 1.154 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LFZW N CA SING N N 1 ASP_LFZW CA C SING N N 2 ASP_LFZW CA CB SING N N 3 ASP_LFZW CA HA SING N N 4 ASP_LFZW C O DOUB N N 5 ASP_LFZW C OXT SING N N 6 ASP_LFZW CB CG SING N N 7 ASP_LFZW CB HB2 SING N N 8 ASP_LFZW CB HB3 SING N N 9 ASP_LFZW CG OD1 DOUB N N 10 ASP_LFZW CG OD2 SING N N 11 ASP_LFZW OD2 HD2 SING N N 12 ASP_LFZW H1 N SING N N 13 ASP_LFZW H2 N SING N N 14 ASP_LFZW H3 N SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CC(=O)O ASP_LFZW InChI InChI 1.01 InChI=1/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/t2-/m0/s1 ASP_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CC(O)=O)C([O-])=O ASP_LFZW SMILES CACTVS 3.341 [NH3+][CH](CC(O)=O)C([O-])=O ASP_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH3+])C(=O)O ASP_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH3+])C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-carboxypropanoate ASP_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-4-hydroxy-4-oxo-butanoate # # data_ASP_LFZW_DHD2 # _chem_comp.id ASP_LFZW_DHD2 _chem_comp.name "L-ASPARTIC ACID-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED OD2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.095 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LFZW_DHD2 N N N 1 1 N N N 33.487 17.736 39.094 0.339 1.620 -0.205 1 ASP_LFZW_DHD2 CA CA C 0 1 N N S 34.909 17.506 38.709 0.460 0.258 0.333 2 ASP_LFZW_DHD2 C C C 0 1 N N N 34.993 16.527 37.537 1.856 -0.256 0.090 3 ASP_LFZW_DHD2 O O O 0 1 N N N 36.106 16.031 37.261 2.674 0.447 -0.478 4 ASP_LFZW_DHD2 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.548 -0.657 -0.364 5 ASP_LFZW_DHD2 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.948 -0.216 -0.022 6 ASP_LFZW_DHD2 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -2.122 0.742 0.712 7 ASP_LFZW_DHD2 OD2 OD2 O -1 1 N N N 34.327 14.999 39.631 -2.905 -0.817 -0.478 8 ASP_LFZW_DHD2 OXT OXT O -1 1 N Y N 33.935 16.265 36.913 2.167 -1.374 0.462 9 ASP_LFZW_DHD2 HA HA H 0 1 N N N 35.356 18.461 38.395 0.259 0.271 1.404 10 ASP_LFZW_DHD2 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.404 -0.602 -1.444 11 ASP_LFZW_DHD2 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.399 -1.684 -0.030 12 ASP_LFZW_DHD2 H1 H1 H 0 1 N N N 33.415 17.787 40.090 0.525 1.607 -1.197 13 ASP_LFZW_DHD2 H2 H2 H 0 1 N N N 33.168 18.594 38.692 -0.595 1.964 -0.043 14 ASP_LFZW_DHD2 H3 H3 H 0 1 N N N 32.925 16.980 38.758 1.004 2.223 0.254 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LFZW_DHD2 N CA SING N N 1 ASP_LFZW_DHD2 CA C SING N N 2 ASP_LFZW_DHD2 CA CB SING N N 3 ASP_LFZW_DHD2 CA HA SING N N 4 ASP_LFZW_DHD2 C O DOUB N N 5 ASP_LFZW_DHD2 C OXT SING N N 6 ASP_LFZW_DHD2 CB CG SING N N 7 ASP_LFZW_DHD2 CB HB2 SING N N 8 ASP_LFZW_DHD2 CB HB3 SING N N 9 ASP_LFZW_DHD2 CG OD1 DOUB N N 10 ASP_LFZW_DHD2 CG OD2 SING N N 11 ASP_LFZW_DHD2 H1 N SING N N 12 ASP_LFZW_DHD2 H2 N SING N N 13 ASP_LFZW_DHD2 H3 N SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LFZW_DHD2 SMILES ACDLabs 10.04 [O-]C(=O)CC(C([O-])=O)[NH3+] ASP_LFZW_DHD2 InChI InChI 1.01 InChI=1/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/p-1/t2-/m0/s1 ASP_LFZW_DHD2 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CC([O-])=O)C([O-])=O ASP_LFZW_DHD2 SMILES CACTVS 3.341 [NH3+][CH](CC([O-])=O)C([O-])=O ASP_LFZW_DHD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH3+])C(=O)[O-] ASP_LFZW_DHD2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH3+])C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LFZW_DHD2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammoniobutanedioate ASP_LFZW_DHD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumylbutanedioate # # data_ASP_LL # _chem_comp.id ASP_LL _chem_comp.name "L-ASPARTIC ACID - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H5 N O3" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 115.087 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LL N N N -1 1 N N N 33.487 17.736 39.094 0.853 1.259 -0.673 1 ASP_LL CA CA C 0 1 N N S 34.909 17.506 38.709 0.826 0.064 0.182 2 ASP_LL C C C -1 1 N N N 34.993 16.527 37.537 2.106 -0.710 0.004 3 ASP_LL O O O 0 1 N N N 36.106 16.031 37.261 3.166 -0.191 0.262 4 ASP_LL CB CB C 0 1 N N N 35.682 16.954 39.915 -0.361 -0.817 -0.212 5 ASP_LL CG CG C 0 1 N N N 35.231 15.544 40.306 -1.647 -0.088 0.081 6 ASP_LL OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -1.617 1.023 0.555 7 ASP_LL OD2 OD2 O 0 1 N N N 34.327 14.999 39.631 -2.826 -0.672 -0.186 8 ASP_LL H H H 0 1 N N N 33.415 17.787 40.090 0.946 1.006 -1.646 9 ASP_LL HA HA H 0 1 N N N 35.356 18.461 38.395 0.725 0.366 1.224 10 ASP_LL HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.307 -1.045 -1.276 11 ASP_LL HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.331 -1.744 0.361 12 ASP_LL HD2 HD2 H 0 1 N N N 34.155 14.130 39.974 -3.624 -0.165 0.019 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LL N CA SING N N 1 ASP_LL N H SING N N 2 ASP_LL CA C SING N N 3 ASP_LL CA CB SING N N 4 ASP_LL CA HA SING N N 5 ASP_LL C O DOUB N N 6 ASP_LL CB CG SING N N 7 ASP_LL CB HB2 SING N N 8 ASP_LL CB HB3 SING N N 9 ASP_LL CG OD1 DOUB N N 10 ASP_LL CG OD2 SING N N 11 ASP_LL OD2 HD2 SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CC(=O)O ASP_LL InChI InChI 1.01 InChI=1/C4H5NO3/c5-3(2-6)1-4(7)8/h3,5H,1H2,(H,7,8)/q-2/t3-/m0/s1 ASP_LL SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CC(O)=O)[C-]=O ASP_LL SMILES CACTVS 3.341 [NH-][CH](CC(O)=O)[C-]=O ASP_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH-])C(=O)O ASP_LL SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH-])C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(carboxymethyl)-2-oxoethan-2-idyl]azanide ASP_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-hydroxy-1,4-dioxo-butan-2-yl]azanide # # data_ASP_LL_DHD2 # _chem_comp.id ASP_LL_DHD2 _chem_comp.name "L-ASPARTIC ACID-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OD2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H4 N O3" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 114.079 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LL_DHD2 N N N -1 1 N N N 33.487 17.736 39.094 0.793 1.262 -0.667 1 ASP_LL_DHD2 CA CA C 0 1 N N S 34.909 17.506 38.709 0.777 0.063 0.181 2 ASP_LL_DHD2 C C C -1 1 N N N 34.993 16.527 37.537 2.068 -0.695 0.004 3 ASP_LL_DHD2 O O O 0 1 N N N 36.106 16.031 37.261 3.120 -0.165 0.268 4 ASP_LL_DHD2 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.398 -0.831 -0.222 5 ASP_LL_DHD2 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.693 -0.119 0.070 6 ASP_LL_DHD2 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -1.679 0.999 0.555 7 ASP_LL_DHD2 OD2 OD2 O -1 1 N N N 34.327 14.999 39.631 -2.757 -0.661 -0.178 8 ASP_LL_DHD2 H H H 0 1 N N N 33.415 17.787 40.090 0.893 1.015 -1.640 9 ASP_LL_DHD2 HA HA H 0 1 N N N 35.356 18.461 38.395 0.669 0.357 1.225 10 ASP_LL_DHD2 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.337 -1.053 -1.287 11 ASP_LL_DHD2 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.358 -1.761 0.346 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LL_DHD2 N CA SING N N 1 ASP_LL_DHD2 N H SING N N 2 ASP_LL_DHD2 CA C SING N N 3 ASP_LL_DHD2 CA CB SING N N 4 ASP_LL_DHD2 CA HA SING N N 5 ASP_LL_DHD2 C O DOUB N N 6 ASP_LL_DHD2 CB CG SING N N 7 ASP_LL_DHD2 CB HB2 SING N N 8 ASP_LL_DHD2 CB HB3 SING N N 9 ASP_LL_DHD2 CG OD1 DOUB N N 10 ASP_LL_DHD2 CG OD2 SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LL_DHD2 SMILES ACDLabs 10.04 O=[C-]C([NH-])CC([O-])=O ASP_LL_DHD2 InChI InChI 1.01 InChI=1/C4H5NO3/c5-3(2-6)1-4(7)8/h3,5H,1H2,(H,7,8)/q-2/p-1/t3-/m0/s1 ASP_LL_DHD2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CC([O-])=O)[C-]=O ASP_LL_DHD2 SMILES CACTVS 3.341 [NH-][CH](CC([O-])=O)[C-]=O ASP_LL_DHD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH-])C(=O)[O-] ASP_LL_DHD2 SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH-])C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LL_DHD2 "SYSTEMATIC NAME" ACDLabs 10.04 (3S)-3-azanidyl-4-oxobutan-4-idoate ASP_LL_DHD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (3S)-3-azanidyl-4-oxo-butanoate # # data_ASP_LSN3 # _chem_comp.id ASP_LSN3 _chem_comp.name "L-ASPARTIC ACID N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N O3" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 117.103 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LSN3 N N N 1 1 N N N 33.487 17.736 39.094 0.850 1.242 -0.624 1 ASP_LSN3 CA CA C 0 1 N N S 34.909 17.506 38.709 0.812 0.021 0.192 2 ASP_LSN3 C C C -1 1 N N N 34.993 16.527 37.537 2.087 -0.757 -0.008 3 ASP_LSN3 O O O 0 1 N N N 36.106 16.031 37.261 3.150 -0.255 0.267 4 ASP_LSN3 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.382 -0.838 -0.231 5 ASP_LSN3 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.662 -0.108 0.083 6 ASP_LSN3 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -1.625 0.986 0.593 7 ASP_LSN3 OD2 OD2 O 0 1 N N N 34.327 14.999 39.631 -2.845 -0.675 -0.203 8 ASP_LSN3 HA HA H 0 1 N N N 35.356 18.461 38.395 0.711 0.290 1.243 9 ASP_LSN3 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.328 -1.033 -1.302 10 ASP_LSN3 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.359 -1.783 0.312 11 ASP_LSN3 HD2 HD2 H 0 1 N N N 34.155 14.130 39.974 -3.639 -0.168 0.016 12 ASP_LSN3 H1 H1 H 0 1 N N N 33.415 17.787 40.090 1.637 1.809 -0.345 13 ASP_LSN3 H2 H2 H 0 1 N N N 33.168 18.594 38.692 0.942 0.993 -1.598 14 ASP_LSN3 H3 H3 H 0 1 N N N 32.925 16.980 38.758 -0.004 1.763 -0.490 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LSN3 N CA SING N N 1 ASP_LSN3 CA C SING N N 2 ASP_LSN3 CA CB SING N N 3 ASP_LSN3 CA HA SING N N 4 ASP_LSN3 C O DOUB N N 5 ASP_LSN3 CB CG SING N N 6 ASP_LSN3 CB HB2 SING N N 7 ASP_LSN3 CB HB3 SING N N 8 ASP_LSN3 CG OD1 DOUB N N 9 ASP_LSN3 CG OD2 SING N N 10 ASP_LSN3 OD2 HD2 SING N N 11 ASP_LSN3 H1 N SING N N 12 ASP_LSN3 H2 N SING N N 13 ASP_LSN3 H3 N SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CC(=O)O ASP_LSN3 InChI InChI 1.01 InChI=1/C4H6NO3/c5-3(2-6)1-4(7)8/h3H,1,5H2,(H,7,8)/q-1/p+1/t3-/m0/s1 ASP_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CC(O)=O)[C-]=O ASP_LSN3 SMILES CACTVS 3.341 [NH3+][CH](CC(O)=O)[C-]=O ASP_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH3+])C(=O)O ASP_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH3+])C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-carboxy-1-oxopropan-1-ide ASP_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-hydroxy-1,4-dioxo-butan-2-yl]azanium # # data_ASP_LSN3_DHD2 # _chem_comp.id ASP_LSN3_DHD2 _chem_comp.name "L-ASPARTIC ACID-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OD2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N O3" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 116.095 _chem_comp.one_letter_code D _chem_comp.three_letter_code ASP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ASP_LSN3_DHD2 N N N 1 1 N N N 33.487 17.736 39.094 0.790 1.245 -0.618 1 ASP_LSN3_DHD2 CA CA C 0 1 N N S 34.909 17.506 38.709 0.764 0.020 0.191 2 ASP_LSN3_DHD2 C C C -1 1 N N N 34.993 16.527 37.537 2.049 -0.742 -0.009 3 ASP_LSN3_DHD2 O O O 0 1 N N N 36.106 16.031 37.261 3.105 -0.228 0.274 4 ASP_LSN3_DHD2 CB CB C 0 1 N N N 35.682 16.954 39.915 -0.417 -0.852 -0.242 5 ASP_LSN3_DHD2 CG CG C 0 1 N N N 35.231 15.544 40.306 -1.708 -0.140 0.072 6 ASP_LSN3_DHD2 OD1 OD1 O 0 1 N N N 35.793 14.986 41.279 -1.685 0.963 0.592 7 ASP_LSN3_DHD2 OD2 OD2 O -1 1 N N N 34.327 14.999 39.631 -2.775 -0.666 -0.196 8 ASP_LSN3_DHD2 HA HA H 0 1 N N N 35.356 18.461 38.395 0.656 0.281 1.243 9 ASP_LSN3_DHD2 HB2 1HB H 0 1 N N N 36.751 16.919 39.657 -0.357 -1.040 -1.313 10 ASP_LSN3_DHD2 HB3 2HB H 0 1 N N N 35.488 17.618 40.770 -0.385 -1.799 0.296 11 ASP_LSN3_DHD2 H1 H1 H 0 1 N N N 33.415 17.787 40.090 0.890 1.003 -1.593 12 ASP_LSN3_DHD2 H2 H2 H 0 1 N N N 33.168 18.594 38.692 -0.070 1.755 -0.485 13 ASP_LSN3_DHD2 H3 H3 H 0 1 N N N 32.925 16.980 38.758 1.569 1.820 -0.333 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP_LSN3_DHD2 N CA SING N N 1 ASP_LSN3_DHD2 CA C SING N N 2 ASP_LSN3_DHD2 CA CB SING N N 3 ASP_LSN3_DHD2 CA HA SING N N 4 ASP_LSN3_DHD2 C O DOUB N N 5 ASP_LSN3_DHD2 CB CG SING N N 6 ASP_LSN3_DHD2 CB HB2 SING N N 7 ASP_LSN3_DHD2 CB HB3 SING N N 8 ASP_LSN3_DHD2 CG OD1 DOUB N N 9 ASP_LSN3_DHD2 CG OD2 SING N N 10 ASP_LSN3_DHD2 H1 N SING N N 11 ASP_LSN3_DHD2 H2 N SING N N 12 ASP_LSN3_DHD2 H3 N SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ASP_LSN3_DHD2 SMILES ACDLabs 10.04 [O-]C(=O)CC([C-]=O)[NH3+] ASP_LSN3_DHD2 InChI InChI 1.01 InChI=1/C4H6NO3/c5-3(2-6)1-4(7)8/h3H,1,5H2,(H,7,8)/q-1/t3-/m0/s1 ASP_LSN3_DHD2 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CC([O-])=O)[C-]=O ASP_LSN3_DHD2 SMILES CACTVS 3.341 [NH3+][CH](CC([O-])=O)[C-]=O ASP_LSN3_DHD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH3+])C(=O)[O-] ASP_LSN3_DHD2 SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH3+])C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ASP_LSN3_DHD2 "SYSTEMATIC NAME" ACDLabs 10.04 (3S)-3-ammonio-4-oxobutan-4-idoate ASP_LSN3_DHD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (3S)-3-azaniumyl-4-oxo-butanoate # # data_CYS_LEO2 # _chem_comp.id CYS_LEO2 _chem_comp.name "L-CYSTEINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 119.142 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LEO2 N N N -1 1 N N N 22.585 13.716 37.715 0.014 1.625 0.294 1 CYS_LEO2 CA CA C 0 1 N N R 22.372 13.468 39.168 0.215 0.178 0.446 2 CYS_LEO2 C C C 0 1 N N N 21.806 14.686 39.893 1.626 -0.178 0.055 3 CYS_LEO2 O O O 0 1 N N N 22.614 15.553 40.277 2.058 -1.296 0.280 4 CYS_LEO2 CB CB C 0 1 N N N 23.683 13.019 39.828 -0.769 -0.572 -0.455 5 CYS_LEO2 SG SG S 0 1 N N N 25.202 13.440 38.921 -2.467 -0.144 0.016 6 CYS_LEO2 OXT OXT O -1 1 N Y N 20.565 14.747 40.076 2.336 0.653 -0.487 7 CYS_LEO2 H H H 0 1 N N N 22.633 14.701 37.548 0.167 1.912 -0.661 8 CYS_LEO2 HA HA H 0 1 N N N 21.624 12.666 39.252 0.044 -0.105 1.485 9 CYS_LEO2 HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.598 -0.288 -1.494 10 CYS_LEO2 HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.620 -1.645 -0.342 11 CYS_LEO2 HG HG H 0 1 N N N 24.936 13.540 37.652 -3.210 -0.862 -0.845 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LEO2 N CA SING N N 1 CYS_LEO2 N H SING N N 2 CYS_LEO2 CA C SING N N 3 CYS_LEO2 CA CB SING N N 4 CYS_LEO2 CA HA SING N N 5 CYS_LEO2 C O DOUB N N 6 CYS_LEO2 C OXT SING N N 7 CYS_LEO2 CB SG SING N N 8 CYS_LEO2 CB HB2 SING N N 9 CYS_LEO2 CB HB3 SING N N 10 CYS_LEO2 SG HG SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CS CYS_LEO2 InChI InChI 1.01 InChI=1/C3H6NO2S/c4-2(1-7)3(5)6/h2,4,7H,1H2,(H,5,6)/q-1/p-1/t2-/m0/s1 CYS_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CS)C([O-])=O CYS_LEO2 SMILES CACTVS 3.341 [NH-][CH](CS)C([O-])=O CYS_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH-])S CYS_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH-])S # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-azanidyl-3-sulfanylpropanoate CYS_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-azanidyl-3-sulfanyl-propanoate # # data_CYS_LEO2_DHG # _chem_comp.id CYS_LEO2_DHG _chem_comp.name "L-CYSTEINE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED SG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H4 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 118.134 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LEO2_DHG N N N -1 1 N N N 22.585 13.716 37.715 -0.031 1.614 0.305 1 CYS_LEO2_DHG CA CA C 0 1 N N R 22.372 13.468 39.168 0.182 0.167 0.442 2 CYS_LEO2_DHG C C C 0 1 N N N 21.806 14.686 39.893 1.600 -0.171 0.057 3 CYS_LEO2_DHG O O O 0 1 N N N 22.614 15.553 40.277 2.040 -1.288 0.272 4 CYS_LEO2_DHG CB CB C 0 1 N N N 23.683 13.019 39.828 -0.787 -0.581 -0.475 5 CYS_LEO2_DHG SG SG S -1 1 N N N 25.202 13.440 38.921 -2.493 -0.174 -0.011 6 CYS_LEO2_DHG OXT OXT O -1 1 N Y N 20.565 14.747 40.076 2.306 0.672 -0.469 7 CYS_LEO2_DHG H H H 0 1 N N N 22.633 14.701 37.548 0.127 1.914 -0.645 8 CYS_LEO2_DHG HA HA H 0 1 N N N 21.624 12.666 39.252 0.006 -0.130 1.476 9 CYS_LEO2_DHG HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.611 -0.284 -1.509 10 CYS_LEO2_DHG HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.629 -1.654 -0.373 11 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LEO2_DHG N CA SING N N 1 CYS_LEO2_DHG N H SING N N 2 CYS_LEO2_DHG CA C SING N N 3 CYS_LEO2_DHG CA CB SING N N 4 CYS_LEO2_DHG CA HA SING N N 5 CYS_LEO2_DHG C O DOUB N N 6 CYS_LEO2_DHG C OXT SING N N 7 CYS_LEO2_DHG CB SG SING N N 8 CYS_LEO2_DHG CB HB2 SING N N 9 CYS_LEO2_DHG CB HB3 SING N N 10 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LEO2_DHG SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])C[S-] CYS_LEO2_DHG InChI InChI 1.01 InChI=1/C3H6NO2S/c4-2(1-7)3(5)6/h2,4,7H,1H2,(H,5,6)/q-1/p-2/t2-/m0/s1 CYS_LEO2_DHG SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](C[S-])C([O-])=O CYS_LEO2_DHG SMILES CACTVS 3.341 [NH-][CH](C[S-])C([O-])=O CYS_LEO2_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH-])[S-] CYS_LEO2_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH-])[S-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LEO2_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-azanidyl-3-sulfidopropanoate CYS_LEO2_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-azanidyl-3-sulfido-propanoate # # data_CYS_LEO2H # _chem_comp.id CYS_LEO2H _chem_comp.name "L-CYSTEINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 120.150 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LEO2H N N N -1 1 N N N 22.585 13.716 37.715 -0.074 1.621 0.424 1 CYS_LEO2H CA CA C 0 1 N N R 22.372 13.468 39.168 0.179 0.174 0.453 2 CYS_LEO2H C C C 0 1 N N N 21.806 14.686 39.893 1.599 -0.096 0.026 3 CYS_LEO2H O O O 0 1 N N N 22.614 15.553 40.277 2.208 0.735 -0.605 4 CYS_LEO2H CB CB C 0 1 N N N 23.683 13.019 39.828 -0.784 -0.532 -0.503 5 CYS_LEO2H SG SG S 0 1 N N N 25.202 13.440 38.921 -2.493 -0.207 0.011 6 CYS_LEO2H OXT OXT O 0 1 N Y N 20.565 14.747 40.076 2.186 -1.259 0.347 7 CYS_LEO2H H H H 0 1 N N N 22.633 14.701 37.548 0.060 1.993 -0.504 8 CYS_LEO2H HA HA H 0 1 N N N 21.624 12.666 39.252 0.026 -0.201 1.465 9 CYS_LEO2H HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.632 -0.157 -1.515 10 CYS_LEO2H HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.596 -1.605 -0.481 11 CYS_LEO2H HG HG H 0 1 N N N 24.936 13.540 37.652 -3.217 -0.877 -0.903 12 CYS_LEO2H HXT HXT H 0 1 N Y N 20.352 15.546 40.545 3.098 -1.387 0.051 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LEO2H N CA SING N N 1 CYS_LEO2H N H SING N N 2 CYS_LEO2H CA C SING N N 3 CYS_LEO2H CA CB SING N N 4 CYS_LEO2H CA HA SING N N 5 CYS_LEO2H C O DOUB N N 6 CYS_LEO2H C OXT SING N N 7 CYS_LEO2H CB SG SING N N 8 CYS_LEO2H CB HB2 SING N N 9 CYS_LEO2H CB HB3 SING N N 10 CYS_LEO2H SG HG SING N N 11 CYS_LEO2H OXT HXT SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])CS CYS_LEO2H InChI InChI 1.01 InChI=1/C3H6NO2S/c4-2(1-7)3(5)6/h2,4,7H,1H2,(H,5,6)/q-1/t2-/m0/s1 CYS_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CS)C(O)=O CYS_LEO2H SMILES CACTVS 3.341 [NH-][CH](CS)C(O)=O CYS_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)[NH-])S CYS_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)[NH-])S # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1R)-1-carboxy-2-sulfanylethyl]azanide CYS_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2R)-1-hydroxy-1-oxo-3-sulfanyl-propan-2-yl]azanide # # data_CYS_LEO2H_DHG # _chem_comp.id CYS_LEO2H_DHG _chem_comp.name "L-CYSTEINE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED SG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 119.142 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LEO2H_DHG N N N -1 1 N N N 22.585 13.716 37.715 -0.119 1.607 0.436 1 CYS_LEO2H_DHG CA CA C 0 1 N N R 22.372 13.468 39.168 0.147 0.162 0.449 2 CYS_LEO2H_DHG C C C 0 1 N N N 21.806 14.686 39.893 1.572 -0.089 0.030 3 CYS_LEO2H_DHG O O O 0 1 N N N 22.614 15.553 40.277 2.179 0.755 -0.586 4 CYS_LEO2H_DHG CB CB C 0 1 N N N 23.683 13.019 39.828 -0.803 -0.540 -0.524 5 CYS_LEO2H_DHG SG SG S -1 1 N N N 25.202 13.440 38.921 -2.518 -0.237 -0.019 6 CYS_LEO2H_DHG OXT OXT O 0 1 N Y N 20.565 14.747 40.076 2.168 -1.252 0.340 7 CYS_LEO2H_DHG H H H 0 1 N N N 22.633 14.701 37.548 0.019 1.992 -0.486 8 CYS_LEO2H_DHG HA HA H 0 1 N N N 21.624 12.666 39.252 -0.010 -0.227 1.455 9 CYS_LEO2H_DHG HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.646 -0.150 -1.530 10 CYS_LEO2H_DHG HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.605 -1.612 -0.514 11 CYS_LEO2H_DHG HXT HXT H 0 1 N Y N 20.352 15.546 40.545 3.083 -1.367 0.050 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LEO2H_DHG N CA SING N N 1 CYS_LEO2H_DHG N H SING N N 2 CYS_LEO2H_DHG CA C SING N N 3 CYS_LEO2H_DHG CA CB SING N N 4 CYS_LEO2H_DHG CA HA SING N N 5 CYS_LEO2H_DHG C O DOUB N N 6 CYS_LEO2H_DHG C OXT SING N N 7 CYS_LEO2H_DHG CB SG SING N N 8 CYS_LEO2H_DHG CB HB2 SING N N 9 CYS_LEO2H_DHG CB HB3 SING N N 10 CYS_LEO2H_DHG OXT HXT SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LEO2H_DHG SMILES ACDLabs 10.04 [S-]CC([NH-])C(=O)O CYS_LEO2H_DHG InChI InChI 1.01 InChI=1/C3H6NO2S/c4-2(1-7)3(5)6/h2,4,7H,1H2,(H,5,6)/q-1/p-1/t2-/m0/s1 CYS_LEO2H_DHG SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](C[S-])C(O)=O CYS_LEO2H_DHG SMILES CACTVS 3.341 [NH-][CH](C[S-])C(O)=O CYS_LEO2H_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)[NH-])[S-] CYS_LEO2H_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)[NH-])[S-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LEO2H_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-azanidyl-2-carboxyethanethiolate CYS_LEO2H_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-azanidyl-3-hydroxy-3-oxo-propane-1-thiolate # # data_CYS_LFOH # _chem_comp.id CYS_LFOH _chem_comp.name "L-CYSTEINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 121.158 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LFOH N N N 0 1 N N N 22.585 13.716 37.715 0.073 1.617 -0.359 1 CYS_LFOH CA CA C 0 1 N N R 22.372 13.468 39.168 -0.176 0.172 -0.438 2 CYS_LFOH C C C 0 1 N N N 21.806 14.686 39.893 -1.594 -0.118 -0.019 3 CYS_LFOH O O O 0 1 N N N 22.614 15.553 40.277 -2.205 0.688 0.641 4 CYS_LFOH CB CB C 0 1 N N N 23.683 13.019 39.828 0.791 -0.564 0.491 5 CYS_LFOH SG SG S 0 1 N N N 25.202 13.440 38.921 2.498 -0.216 -0.013 6 CYS_LFOH OXT OXT O 0 1 N Y N 20.565 14.747 40.076 -2.178 -1.271 -0.379 7 CYS_LFOH HA HA H 0 1 N N N 21.624 12.666 39.252 -0.024 -0.168 -1.463 8 CYS_LFOH HB2 1HB H 0 1 N N N 23.741 13.505 40.813 0.639 -0.225 1.516 9 CYS_LFOH HB3 2HB H 0 1 N N N 23.645 11.920 39.866 0.606 -1.637 0.433 10 CYS_LFOH HG HG H 0 1 N N N 24.936 13.540 37.652 3.225 -0.915 0.876 11 CYS_LFOH HXT HXT H 0 1 N Y N 20.352 15.546 40.545 -3.089 -1.412 -0.087 12 CYS_LFOH H1 H1 H 0 1 N N N 22.633 14.701 37.548 -0.509 2.121 -1.012 13 CYS_LFOH H2 H2 H 0 1 N N N 23.441 13.287 37.426 -0.062 1.956 0.582 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LFOH N CA SING N N 1 CYS_LFOH CA C SING N N 2 CYS_LFOH CA CB SING N N 3 CYS_LFOH CA HA SING N N 4 CYS_LFOH C O DOUB N N 5 CYS_LFOH C OXT SING N N 6 CYS_LFOH CB SG SING N N 7 CYS_LFOH CB HB2 SING N N 8 CYS_LFOH CB HB3 SING N N 9 CYS_LFOH SG HG SING N N 10 CYS_LFOH OXT HXT SING N N 11 CYS_LFOH H1 N SING N N 12 CYS_LFOH H2 N SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)CS CYS_LFOH InChI InChI 1.01 InChI=1/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m0/s1 CYS_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CS)C(O)=O CYS_LFOH SMILES CACTVS 3.341 N[CH](CS)C(O)=O CYS_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)N)S CYS_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)N)S # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-cysteine CYS_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-amino-3-sulfanyl-propanoic acid" # # data_CYS_LFOH_DHG # _chem_comp.id CYS_LFOH_DHG _chem_comp.name "L-CYSTEINE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED SG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 120.150 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LFOH_DHG N N N 0 1 N N N 22.585 13.716 37.715 0.118 1.604 -0.371 1 CYS_LFOH_DHG CA CA C 0 1 N N R 22.372 13.468 39.168 -0.144 0.160 -0.434 2 CYS_LFOH_DHG C C C 0 1 N N N 21.806 14.686 39.893 -1.568 -0.111 -0.022 3 CYS_LFOH_DHG O O O 0 1 N N N 22.614 15.553 40.277 -2.177 0.710 0.623 4 CYS_LFOH_DHG CB CB C 0 1 N N N 23.683 13.019 39.828 0.809 -0.573 0.512 5 CYS_LFOH_DHG SG SG S -1 1 N N N 25.202 13.440 38.921 2.523 -0.247 0.016 6 CYS_LFOH_DHG OXT OXT O 0 1 N Y N 20.565 14.747 40.076 -2.161 -1.263 -0.372 7 CYS_LFOH_DHG HA HA H 0 1 N N N 21.624 12.666 39.252 0.013 -0.194 -1.453 8 CYS_LFOH_DHG HB2 1HB H 0 1 N N N 23.741 13.505 40.813 0.652 -0.220 1.531 9 CYS_LFOH_DHG HB3 2HB H 0 1 N N N 23.645 11.920 39.866 0.614 -1.645 0.465 10 CYS_LFOH_DHG HXT HXT H 0 1 N Y N 20.352 15.546 40.545 -3.075 -1.392 -0.085 11 CYS_LFOH_DHG H1 H1 H 0 1 N N N 22.633 14.701 37.548 -0.454 2.105 -1.035 12 CYS_LFOH_DHG H2 H2 H 0 1 N N N 23.441 13.287 37.426 -0.021 1.956 0.564 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LFOH_DHG N CA SING N N 1 CYS_LFOH_DHG CA C SING N N 2 CYS_LFOH_DHG CA CB SING N N 3 CYS_LFOH_DHG CA HA SING N N 4 CYS_LFOH_DHG C O DOUB N N 5 CYS_LFOH_DHG C OXT SING N N 6 CYS_LFOH_DHG CB SG SING N N 7 CYS_LFOH_DHG CB HB2 SING N N 8 CYS_LFOH_DHG CB HB3 SING N N 9 CYS_LFOH_DHG OXT HXT SING N N 10 CYS_LFOH_DHG H1 N SING N N 11 CYS_LFOH_DHG H2 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LFOH_DHG SMILES ACDLabs 10.04 [S-]CC(N)C(=O)O CYS_LFOH_DHG InChI InChI 1.01 InChI=1/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-1/t2-/m0/s1 CYS_LFOH_DHG SMILES_CANONICAL CACTVS 3.341 N[C@@H](C[S-])C(O)=O CYS_LFOH_DHG SMILES CACTVS 3.341 N[CH](C[S-])C(O)=O CYS_LFOH_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)N)[S-] CYS_LFOH_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)N)[S-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LFOH_DHG "SYSTEMATIC NAME" ACDLabs 10.04 3-sulfido-L-alanine CYS_LFOH_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-amino-3-hydroxy-3-oxo-propane-1-thiolate # # data_CYS_LFZW # _chem_comp.id CYS_LFZW _chem_comp.name "L-CYSTEINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 121.158 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LFZW N N N 1 1 N N N 22.585 13.716 37.715 -0.014 1.602 -0.219 1 CYS_LFZW CA CA C 0 1 N N R 22.372 13.468 39.168 -0.217 0.162 -0.428 2 CYS_LFZW C C C 0 1 N N N 21.806 14.686 39.893 -1.628 -0.207 -0.051 3 CYS_LFZW O O O 0 1 N N N 22.614 15.553 40.277 -2.061 -1.315 -0.319 4 CYS_LFZW CB CB C 0 1 N N N 23.683 13.019 39.828 0.766 -0.623 0.443 5 CYS_LFZW SG SG S 0 1 N N N 25.202 13.440 38.921 2.465 -0.179 -0.012 6 CYS_LFZW OXT OXT O -1 1 N Y N 20.565 14.747 40.076 -2.337 0.602 0.524 7 CYS_LFZW HA HA H 0 1 N N N 21.624 12.666 39.252 -0.046 -0.080 -1.477 8 CYS_LFZW HB2 1HB H 0 1 N N N 23.741 13.505 40.813 0.595 -0.381 1.492 9 CYS_LFZW HB3 2HB H 0 1 N N N 23.645 11.920 39.866 0.616 -1.692 0.287 10 CYS_LFZW HG HG H 0 1 N N N 24.936 13.540 37.652 3.207 -0.932 0.820 11 CYS_LFZW H1 H1 H 0 1 N N N 22.633 14.701 37.548 0.931 1.849 -0.471 12 CYS_LFZW H2 H2 H 0 1 N N N 23.441 13.287 37.426 -0.663 2.120 -0.793 13 CYS_LFZW H3 H3 H 0 1 N N N 21.824 13.327 37.196 -0.172 1.826 0.752 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LFZW N CA SING N N 1 CYS_LFZW CA C SING N N 2 CYS_LFZW CA CB SING N N 3 CYS_LFZW CA HA SING N N 4 CYS_LFZW C O DOUB N N 5 CYS_LFZW C OXT SING N N 6 CYS_LFZW CB SG SING N N 7 CYS_LFZW CB HB2 SING N N 8 CYS_LFZW CB HB3 SING N N 9 CYS_LFZW SG HG SING N N 10 CYS_LFZW H1 N SING N N 11 CYS_LFZW H2 N SING N N 12 CYS_LFZW H3 N SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CS CYS_LFZW InChI InChI 1.01 InChI=1/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m0/s1 CYS_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CS)C([O-])=O CYS_LFZW SMILES CACTVS 3.341 [NH3+][CH](CS)C([O-])=O CYS_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH3+])S CYS_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH3+])S # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-ammonio-3-sulfanylpropanoate CYS_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-azaniumyl-3-sulfanyl-propanoate # # data_CYS_LFZW_DHG # _chem_comp.id CYS_LFZW_DHG _chem_comp.name "L-CYSTEINE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED SG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 120.150 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LFZW_DHG N N N 1 1 N N N 22.585 13.716 37.715 0.019 1.602 -0.132 1 CYS_LFZW_DHG CA CA C 0 1 N N R 22.372 13.468 39.168 -0.187 0.176 -0.414 2 CYS_LFZW_DHG C C C 0 1 N N N 21.806 14.686 39.893 -1.602 -0.207 -0.064 3 CYS_LFZW_DHG O O O 0 1 N N N 22.614 15.553 40.277 -2.368 0.632 0.379 4 CYS_LFZW_DHG CB CB C 0 1 N N N 23.683 13.019 39.828 0.788 -0.656 0.422 5 CYS_LFZW_DHG SG SG S -1 1 N N N 25.202 13.440 38.921 2.491 -0.195 0.001 6 CYS_LFZW_DHG OXT OXT O -1 1 N Y N 20.565 14.747 40.076 -1.980 -1.354 -0.225 7 CYS_LFZW_DHG HA HA H 0 1 N N N 21.624 12.666 39.252 -0.010 -0.014 -1.473 8 CYS_LFZW_DHG HB2 1HB H 0 1 N N N 23.741 13.505 40.813 0.612 -0.465 1.481 9 CYS_LFZW_DHG HB3 2HB H 0 1 N N N 23.645 11.920 39.866 0.635 -1.714 0.213 10 CYS_LFZW_DHG H1 H1 H 0 1 N N N 22.633 14.701 37.548 0.967 1.858 -0.366 11 CYS_LFZW_DHG H2 H2 H 0 1 N N N 23.441 13.287 37.426 -0.623 2.151 -0.684 12 CYS_LFZW_DHG H3 H3 H 0 1 N N N 21.824 13.327 37.196 -0.144 1.778 0.848 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LFZW_DHG N CA SING N N 1 CYS_LFZW_DHG CA C SING N N 2 CYS_LFZW_DHG CA CB SING N N 3 CYS_LFZW_DHG CA HA SING N N 4 CYS_LFZW_DHG C O DOUB N N 5 CYS_LFZW_DHG C OXT SING N N 6 CYS_LFZW_DHG CB SG SING N N 7 CYS_LFZW_DHG CB HB2 SING N N 8 CYS_LFZW_DHG CB HB3 SING N N 9 CYS_LFZW_DHG H1 N SING N N 10 CYS_LFZW_DHG H2 N SING N N 11 CYS_LFZW_DHG H3 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LFZW_DHG SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])C[S-] CYS_LFZW_DHG InChI InChI 1.01 InChI=1/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-1/t2-/m0/s1 CYS_LFZW_DHG SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](C[S-])C([O-])=O CYS_LFZW_DHG SMILES CACTVS 3.341 [NH3+][CH](C[S-])C([O-])=O CYS_LFZW_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH3+])[S-] CYS_LFZW_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH3+])[S-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LFZW_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-ammonio-3-sulfidopropanoate CYS_LFZW_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-azaniumyl-3-sulfido-propanoate # # data_CYS_LL # _chem_comp.id CYS_LL _chem_comp.name "L-CYSTEINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 103.143 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LL N N N -1 1 N N N 22.585 13.716 37.715 0.491 1.420 -0.195 1 CYS_LL CA CA C 0 1 N N R 22.372 13.468 39.168 0.533 0.022 0.252 2 CYS_LL C C C -1 1 N N N 21.806 14.686 39.893 1.834 -0.604 -0.180 3 CYS_LL O O O 0 1 N N N 22.614 15.553 40.277 2.883 -0.143 0.203 4 CYS_LL CB CB C 0 1 N N N 23.683 13.019 39.828 -0.634 -0.748 -0.368 5 CYS_LL SG SG S 0 1 N N N 25.202 13.440 38.921 -2.200 0.005 0.152 6 CYS_LL H H H 0 1 N N N 22.633 14.701 37.548 0.561 1.481 -1.200 7 CYS_LL HA HA H 0 1 N N N 21.624 12.666 39.252 0.456 -0.014 1.339 8 CYS_LL HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.557 -0.712 -1.455 9 CYS_LL HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.602 -1.786 -0.036 10 CYS_LL HG HG H 0 1 N N N 24.936 13.540 37.652 -3.122 -0.761 -0.458 11 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LL N CA SING N N 1 CYS_LL N H SING N N 2 CYS_LL CA C SING N N 3 CYS_LL CA CB SING N N 4 CYS_LL CA HA SING N N 5 CYS_LL C O DOUB N N 6 CYS_LL CB SG SING N N 7 CYS_LL CB HB2 SING N N 8 CYS_LL CB HB3 SING N N 9 CYS_LL SG HG SING N N 10 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CS CYS_LL InChI InChI 1.01 InChI=1/C3H5NOS/c4-3(1-5)2-6/h3-4,6H,2H2/q-2/t3-/m1/s1 CYS_LL SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CS)[C-]=O CYS_LL SMILES CACTVS 3.341 [NH-][CH](CS)[C-]=O CYS_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH-])S CYS_LL SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH-])S # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1R)-2-oxo-1-(sulfanylmethyl)ethan-2-idyl]azanide CYS_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2R)-1-oxo-3-sulfanyl-propan-2-yl]azanide # # data_CYS_LL_DHG # _chem_comp.id CYS_LL_DHG _chem_comp.name "L-CYSTEINE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED SG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H4 N O S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 102.135 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LL_DHG N N N -1 1 N N N 22.585 13.716 37.715 0.449 1.419 -0.183 1 CYS_LL_DHG CA CA C 0 1 N N R 22.372 13.468 39.168 0.501 0.016 0.250 2 CYS_LL_DHG C C C -1 1 N N N 21.806 14.686 39.893 1.809 -0.595 -0.182 3 CYS_LL_DHG O O O 0 1 N N N 22.614 15.553 40.277 2.852 -0.130 0.210 4 CYS_LL_DHG CB CB C 0 1 N N N 23.683 13.019 39.828 -0.657 -0.757 -0.384 5 CYS_LL_DHG SG SG S -1 1 N N N 25.202 13.440 38.921 -2.231 -0.022 0.137 6 CYS_LL_DHG H H H 0 1 N N N 22.633 14.701 37.548 0.523 1.490 -1.187 7 CYS_LL_DHG HA HA H 0 1 N N N 21.624 12.666 39.252 0.419 -0.032 1.336 8 CYS_LL_DHG HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.575 -0.709 -1.469 9 CYS_LL_DHG HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.618 -1.798 -0.062 10 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LL_DHG N CA SING N N 1 CYS_LL_DHG N H SING N N 2 CYS_LL_DHG CA C SING N N 3 CYS_LL_DHG CA CB SING N N 4 CYS_LL_DHG CA HA SING N N 5 CYS_LL_DHG C O DOUB N N 6 CYS_LL_DHG CB SG SING N N 7 CYS_LL_DHG CB HB2 SING N N 8 CYS_LL_DHG CB HB3 SING N N 9 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LL_DHG SMILES ACDLabs 10.04 [S-]CC([NH-])[C-]=O CYS_LL_DHG InChI InChI 1.01 InChI=1/C3H5NOS/c4-3(1-5)2-6/h3-4,6H,2H2/q-2/p-1/t3-/m1/s1 CYS_LL_DHG SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](C[S-])[C-]=O CYS_LL_DHG SMILES CACTVS 3.341 [NH-][CH](C[S-])[C-]=O CYS_LL_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH-])[S-] CYS_LL_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH-])[S-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LL_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-azanidyl-3-oxopropan-3-ide-1-thiolate CYS_LL_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-azanidyl-3-oxo-propane-1-thiolate # # data_CYS_LSN3 # _chem_comp.id CYS_LSN3 _chem_comp.name "L-CYSTEINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 105.159 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LSN3 N N N 1 1 N N N 22.585 13.716 37.715 0.490 1.379 -0.218 1 CYS_LSN3 CA CA C 0 1 N N R 22.372 13.468 39.168 0.525 -0.013 0.249 2 CYS_LSN3 C C C -1 1 N N N 21.806 14.686 39.893 1.822 -0.653 -0.175 3 CYS_LSN3 O O O 0 1 N N N 22.614 15.553 40.277 2.873 -0.192 0.201 4 CYS_LSN3 CB CB C 0 1 N N N 23.683 13.019 39.828 -0.647 -0.785 -0.360 5 CYS_LSN3 SG SG S 0 1 N N N 25.202 13.440 38.921 -2.208 -0.016 0.150 6 CYS_LSN3 HA HA H 0 1 N N N 21.624 12.666 39.252 0.448 -0.034 1.336 7 CYS_LSN3 HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.570 -0.765 -1.447 8 CYS_LSN3 HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.621 -1.819 -0.013 9 CYS_LSN3 HG HG H 0 1 N N N 24.936 13.540 37.652 -3.135 -0.785 -0.448 10 CYS_LSN3 H1 H1 H 0 1 N N N 22.633 14.701 37.548 1.263 1.888 0.183 11 CYS_LSN3 H2 H2 H 0 1 N N N 23.441 13.287 37.426 0.561 1.398 -1.224 12 CYS_LSN3 H3 H3 H 0 1 N N N 21.824 13.327 37.196 -0.379 1.807 0.066 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LSN3 N CA SING N N 1 CYS_LSN3 CA C SING N N 2 CYS_LSN3 CA CB SING N N 3 CYS_LSN3 CA HA SING N N 4 CYS_LSN3 C O DOUB N N 5 CYS_LSN3 CB SG SING N N 6 CYS_LSN3 CB HB2 SING N N 7 CYS_LSN3 CB HB3 SING N N 8 CYS_LSN3 SG HG SING N N 9 CYS_LSN3 H1 N SING N N 10 CYS_LSN3 H2 N SING N N 11 CYS_LSN3 H3 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CS CYS_LSN3 InChI InChI 1.01 InChI=1/C3H6NOS/c4-3(1-5)2-6/h3,6H,2,4H2/q-1/p+1/t3-/m1/s1 CYS_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CS)[C-]=O CYS_LSN3 SMILES CACTVS 3.341 [NH3+][CH](CS)[C-]=O CYS_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH3+])S CYS_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH3+])S # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-ammonio-1-oxo-3-sulfanylpropan-1-ide CYS_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2R)-1-oxo-3-sulfanyl-propan-2-yl]azanium # # data_CYS_LSN3_DHG # _chem_comp.id CYS_LSN3_DHG _chem_comp.name "L-CYSTEINE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED SG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 104.151 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal CYS_LSN3_DHG N N N 1 1 N N N 22.585 13.716 37.715 0.449 1.377 -0.209 1 CYS_LSN3_DHG CA CA C 0 1 N N R 22.372 13.468 39.168 0.494 -0.019 0.247 2 CYS_LSN3_DHG C C C -1 1 N N N 21.806 14.686 39.893 1.798 -0.643 -0.177 3 CYS_LSN3_DHG O O O 0 1 N N N 22.614 15.553 40.277 2.844 -0.177 0.207 4 CYS_LSN3_DHG CB CB C 0 1 N N N 23.683 13.019 39.828 -0.669 -0.796 -0.374 5 CYS_LSN3_DHG SG SG S -1 1 N N N 25.202 13.440 38.921 -2.239 -0.044 0.136 6 CYS_LSN3_DHG HA HA H 0 1 N N N 21.624 12.666 39.252 0.412 -0.049 1.333 7 CYS_LSN3_DHG HB2 1HB H 0 1 N N N 23.741 13.505 40.813 -0.588 -0.765 -1.460 8 CYS_LSN3_DHG HB3 2HB H 0 1 N N N 23.645 11.920 39.866 -0.636 -1.832 -0.036 9 CYS_LSN3_DHG H1 H1 H 0 1 N N N 22.633 14.701 37.548 1.215 1.889 0.201 10 CYS_LSN3_DHG H2 H2 H 0 1 N N N 23.441 13.287 37.426 0.524 1.405 -1.214 11 CYS_LSN3_DHG H3 H3 H 0 1 N N N 21.824 13.327 37.196 -0.425 1.795 0.075 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYS_LSN3_DHG N CA SING N N 1 CYS_LSN3_DHG CA C SING N N 2 CYS_LSN3_DHG CA CB SING N N 3 CYS_LSN3_DHG CA HA SING N N 4 CYS_LSN3_DHG C O DOUB N N 5 CYS_LSN3_DHG CB SG SING N N 6 CYS_LSN3_DHG CB HB2 SING N N 7 CYS_LSN3_DHG CB HB3 SING N N 8 CYS_LSN3_DHG H1 N SING N N 9 CYS_LSN3_DHG H2 N SING N N 10 CYS_LSN3_DHG H3 N SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYS_LSN3_DHG SMILES ACDLabs 10.04 [S-]CC([C-]=O)[NH3+] CYS_LSN3_DHG InChI InChI 1.01 InChI=1/C3H6NOS/c4-3(1-5)2-6/h3,6H,2,4H2/q-1/t3-/m1/s1 CYS_LSN3_DHG SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](C[S-])[C-]=O CYS_LSN3_DHG SMILES CACTVS 3.341 [NH3+][CH](C[S-])[C-]=O CYS_LSN3_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH3+])[S-] CYS_LSN3_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH3+])[S-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYS_LSN3_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-ammonio-3-oxopropan-3-ide-1-thiolate CYS_LSN3_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-azaniumyl-3-oxo-propane-1-thiolate # # data_GLN_LEO2 # _chem_comp.id GLN_LEO2 _chem_comp.name "L-GLUTAMINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N2 O3" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 144.129 _chem_comp.one_letter_code Q _chem_comp.three_letter_code GLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLN_LEO2 N N N -1 1 N N N -12.869 34.883 120.983 1.237 1.829 -0.192 1 GLN_LEO2 CA CA C 0 1 N N S -12.048 35.305 119.985 1.148 0.510 0.449 2 GLN_LEO2 C C C 0 1 N N N -10.724 35.797 120.549 2.364 -0.305 0.092 3 GLN_LEO2 O O O 0 1 N N N -9.691 35.852 119.806 2.580 -1.360 0.663 4 GLN_LEO2 CB CB C 0 1 N N N -12.660 36.476 119.161 -0.110 -0.211 -0.041 5 GLN_LEO2 CG CG C 0 1 N N N -13.110 37.658 120.071 -1.351 0.551 0.428 6 GLN_LEO2 CD CD C 0 1 N N N -13.701 38.830 119.321 -2.589 -0.159 -0.054 7 GLN_LEO2 OE1 OE1 O 0 1 N N N -14.715 38.686 118.658 -2.489 -1.175 -0.709 8 GLN_LEO2 NE2 NE2 N 0 1 N N N -13.069 39.999 119.445 -3.808 0.335 0.242 9 GLN_LEO2 OXT OXT O -1 1 N Y N -10.665 36.169 121.753 3.133 0.092 -0.767 10 GLN_LEO2 H H H 0 1 N N N -12.343 34.779 121.827 1.285 1.741 -1.196 11 GLN_LEO2 HA HA H 0 1 N N N -11.904 34.434 119.329 1.097 0.634 1.530 12 GLN_LEO2 HB2 1HB H 0 1 N N N -11.900 36.845 118.456 -0.102 -0.256 -1.130 13 GLN_LEO2 HB3 2HB H 0 1 N N N -13.547 36.095 118.634 -0.130 -1.223 0.364 14 GLN_LEO2 HG2 1HG H 0 1 N N N -13.876 37.279 120.763 -1.359 0.597 1.517 15 GLN_LEO2 HG3 2HG H 0 1 N N N -12.208 38.029 120.580 -1.331 1.563 0.023 16 GLN_LEO2 HE21 1HE2 H 0 0 N N N -12.270 39.893 120.037 -3.887 1.148 0.766 17 GLN_LEO2 HE22 2HE2 H 0 0 N N N -13.352 40.854 119.011 -4.605 -0.122 -0.069 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN_LEO2 N CA SING N N 1 GLN_LEO2 N H SING N N 2 GLN_LEO2 CA C SING N N 3 GLN_LEO2 CA CB SING N N 4 GLN_LEO2 CA HA SING N N 5 GLN_LEO2 C O DOUB N N 6 GLN_LEO2 C OXT SING N N 7 GLN_LEO2 CB CG SING N N 8 GLN_LEO2 CB HB2 SING N N 9 GLN_LEO2 CB HB3 SING N N 10 GLN_LEO2 CG CD SING N N 11 GLN_LEO2 CG HG2 SING N N 12 GLN_LEO2 CG HG3 SING N N 13 GLN_LEO2 CD OE1 DOUB N N 14 GLN_LEO2 CD NE2 SING N N 15 GLN_LEO2 NE2 HE21 SING N N 16 GLN_LEO2 NE2 HE22 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLN_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCC(=O)N GLN_LEO2 InChI InChI 1.01 InChI=1/C5H9N2O3/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H2,7,8)(H,9,10)/q-1/p-1/t3-/m0/s1 GLN_LEO2 SMILES_CANONICAL CACTVS 3.341 NC(=O)CC[C@H]([NH-])C([O-])=O GLN_LEO2 SMILES CACTVS 3.341 NC(=O)CC[CH]([NH-])C([O-])=O GLN_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)[C@@H](C(=O)[O-])[NH-] GLN_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)C(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLN_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-amino-2-azanidyl-5-oxopentanoate GLN_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-amino-2-azanidyl-5-oxo-pentanoate # # data_GLN_LEO2H # _chem_comp.id GLN_LEO2H _chem_comp.name "L-GLUTAMINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N2 O3" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 145.137 _chem_comp.one_letter_code Q _chem_comp.three_letter_code GLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLN_LEO2H N N N -1 1 N N N -12.869 34.883 120.983 1.169 1.885 -0.125 1 GLN_LEO2H CA CA C 0 1 N N S -12.048 35.305 119.985 1.113 0.535 0.451 2 GLN_LEO2H C C C 0 1 N N N -10.724 35.797 120.549 2.343 -0.236 0.045 3 GLN_LEO2H O O O 0 1 N N N -9.691 35.852 119.806 2.989 0.118 -0.912 4 GLN_LEO2H CB CB C 0 1 N N N -12.660 36.476 119.161 -0.134 -0.187 -0.062 5 GLN_LEO2H CG CG C 0 1 N N N -13.110 37.658 120.071 -1.385 0.526 0.455 6 GLN_LEO2H CD CD C 0 1 N N N -13.701 38.830 119.321 -2.614 -0.186 -0.051 7 GLN_LEO2H OE1 OE1 O 0 1 N N N -14.715 38.686 118.658 -2.500 -1.166 -0.755 8 GLN_LEO2H NE2 NE2 N 0 1 N N N -13.069 39.999 119.445 -3.839 0.268 0.280 9 GLN_LEO2H OXT OXT O 0 1 N Y N -10.665 36.169 121.753 2.720 -1.316 0.748 10 GLN_LEO2H H H H 0 1 N N N -12.343 34.779 121.827 1.209 1.847 -1.133 11 GLN_LEO2H HA HA H 0 1 N N N -11.904 34.434 119.329 1.071 0.606 1.538 12 GLN_LEO2H HB2 1HB H 0 1 N N N -11.900 36.845 118.456 -0.135 -0.180 -1.152 13 GLN_LEO2H HB3 2HB H 0 1 N N N -13.547 36.095 118.634 -0.130 -1.217 0.294 14 GLN_LEO2H HG2 1HG H 0 1 N N N -13.876 37.279 120.763 -1.383 0.518 1.545 15 GLN_LEO2H HG3 2HG H 0 1 N N N -12.208 38.029 120.580 -1.389 1.556 0.099 16 GLN_LEO2H HE21 1HE2 H 0 0 N N N -12.270 39.893 120.037 -3.930 1.053 0.843 17 GLN_LEO2H HE22 2HE2 H 0 0 N N N -13.352 40.854 119.011 -4.630 -0.190 -0.045 18 GLN_LEO2H HXT HXT H 0 1 N Y N -9.783 36.462 121.951 3.516 -1.778 0.449 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN_LEO2H N CA SING N N 1 GLN_LEO2H N H SING N N 2 GLN_LEO2H CA C SING N N 3 GLN_LEO2H CA CB SING N N 4 GLN_LEO2H CA HA SING N N 5 GLN_LEO2H C O DOUB N N 6 GLN_LEO2H C OXT SING N N 7 GLN_LEO2H CB CG SING N N 8 GLN_LEO2H CB HB2 SING N N 9 GLN_LEO2H CB HB3 SING N N 10 GLN_LEO2H CG CD SING N N 11 GLN_LEO2H CG HG2 SING N N 12 GLN_LEO2H CG HG3 SING N N 13 GLN_LEO2H CD OE1 DOUB N N 14 GLN_LEO2H CD NE2 SING N N 15 GLN_LEO2H NE2 HE21 SING N N 16 GLN_LEO2H NE2 HE22 SING N N 17 GLN_LEO2H OXT HXT SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLN_LEO2H SMILES ACDLabs 10.04 O=C(N)CCC([NH-])C(=O)O GLN_LEO2H InChI InChI 1.01 InChI=1/C5H9N2O3/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H2,7,8)(H,9,10)/q-1/t3-/m0/s1 GLN_LEO2H SMILES_CANONICAL CACTVS 3.341 NC(=O)CC[C@H]([NH-])C(O)=O GLN_LEO2H SMILES CACTVS 3.341 NC(=O)CC[CH]([NH-])C(O)=O GLN_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)[C@@H](C(=O)O)[NH-] GLN_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)C(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLN_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-amino-1-carboxy-4-oxobutyl]azanide GLN_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-amino-1-hydroxy-1,5-dioxo-pentan-2-yl]azanide # # data_GLN_LFOH # _chem_comp.id GLN_LFOH _chem_comp.name "L-GLUTAMINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H10 N2 O3" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.144 _chem_comp.one_letter_code Q _chem_comp.three_letter_code GLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLN_LFOH N N N 0 1 N N N -12.869 34.883 120.983 1.169 1.866 -0.137 1 GLN_LFOH CA CA C 0 1 N N S -12.048 35.305 119.985 1.112 0.519 0.447 2 GLN_LFOH C C C 0 1 N N N -10.724 35.797 120.549 2.340 -0.256 0.045 3 GLN_LFOH O O O 0 1 N N N -9.691 35.852 119.806 2.987 0.092 -0.914 4 GLN_LFOH CB CB C 0 1 N N N -12.660 36.476 119.161 -0.137 -0.204 -0.062 5 GLN_LFOH CG CG C 0 1 N N N -13.110 37.658 120.071 -1.387 0.513 0.451 6 GLN_LFOH CD CD C 0 1 N N N -13.701 38.830 119.321 -2.616 -0.199 -0.051 7 GLN_LFOH OE1 OE1 O 0 1 N N N -14.715 38.686 118.658 -2.504 -1.184 -0.749 8 GLN_LFOH NE2 NE2 N 0 1 N N N -13.069 39.999 119.445 -3.841 0.258 0.278 9 GLN_LFOH OXT OXT O 0 1 N Y N -10.665 36.169 121.753 2.716 -1.332 0.754 10 GLN_LFOH HA HA H 0 1 N N N -11.904 34.434 119.329 1.069 0.596 1.533 11 GLN_LFOH HB2 1HB H 0 1 N N N -11.900 36.845 118.456 -0.139 -0.203 -1.152 12 GLN_LFOH HB3 2HB H 0 1 N N N -13.547 36.095 118.634 -0.134 -1.232 0.300 13 GLN_LFOH HG2 1HG H 0 1 N N N -13.876 37.279 120.763 -1.385 0.512 1.541 14 GLN_LFOH HG3 2HG H 0 1 N N N -12.208 38.029 120.580 -1.390 1.541 0.089 15 GLN_LFOH HE21 1HE2 H 0 0 N N N -12.270 39.893 120.037 -3.931 1.046 0.836 16 GLN_LFOH HE22 2HE2 H 0 0 N N N -13.352 40.854 119.011 -4.633 -0.201 -0.045 17 GLN_LFOH HXT HXT H 0 1 N Y N -9.783 36.462 121.951 3.511 -1.797 0.458 18 GLN_LFOH H1 H1 H 0 1 N N N -12.343 34.779 121.827 1.209 1.822 -1.144 19 GLN_LFOH H2 H2 H 0 1 N N N -13.595 35.556 121.124 0.389 2.427 0.170 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN_LFOH N CA SING N N 1 GLN_LFOH CA C SING N N 2 GLN_LFOH CA CB SING N N 3 GLN_LFOH CA HA SING N N 4 GLN_LFOH C O DOUB N N 5 GLN_LFOH C OXT SING N N 6 GLN_LFOH CB CG SING N N 7 GLN_LFOH CB HB2 SING N N 8 GLN_LFOH CB HB3 SING N N 9 GLN_LFOH CG CD SING N N 10 GLN_LFOH CG HG2 SING N N 11 GLN_LFOH CG HG3 SING N N 12 GLN_LFOH CD OE1 DOUB N N 13 GLN_LFOH CD NE2 SING N N 14 GLN_LFOH NE2 HE21 SING N N 15 GLN_LFOH NE2 HE22 SING N N 16 GLN_LFOH OXT HXT SING N N 17 GLN_LFOH H1 N SING N N 18 GLN_LFOH H2 N SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLN_LFOH SMILES ACDLabs 10.04 O=C(N)CCC(N)C(=O)O GLN_LFOH InChI InChI 1.01 InChI=1/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/t3-/m0/s1 GLN_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCC(N)=O)C(O)=O GLN_LFOH SMILES CACTVS 3.341 N[CH](CCC(N)=O)C(O)=O GLN_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)[C@@H](C(=O)O)N GLN_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)C(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLN_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-glutamine GLN_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2,5-diamino-5-oxo-pentanoic acid" # # data_GLN_LFZW # _chem_comp.id GLN_LFZW _chem_comp.name "L-GLUTAMINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H10 N2 O3" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.144 _chem_comp.one_letter_code Q _chem_comp.three_letter_code GLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLN_LFZW N N N 1 1 N N N -12.869 34.883 120.983 -1.234 1.786 0.203 1 GLN_LFZW CA CA C 0 1 N N S -12.048 35.305 119.985 -1.134 0.471 -0.444 2 GLN_LFZW C C C 0 1 N N N -10.724 35.797 120.549 -2.344 -0.356 -0.092 3 GLN_LFZW O O O 0 1 N N N -9.691 35.852 119.806 -2.552 -1.410 -0.668 4 GLN_LFZW CB CB C 0 1 N N N -12.660 36.476 119.161 0.129 -0.242 0.041 5 GLN_LFZW CG CG C 0 1 N N N -13.110 37.658 120.071 1.363 0.533 -0.425 6 GLN_LFZW CD CD C 0 1 N N N -13.701 38.830 119.321 2.608 -0.170 0.054 7 GLN_LFZW OE1 OE1 O 0 1 N N N -14.715 38.686 118.658 2.517 -1.189 0.704 8 GLN_LFZW NE2 NE2 N 0 1 N N N -13.069 39.999 119.445 3.822 0.336 -0.241 9 GLN_LFZW OXT OXT O -1 1 N Y N -10.665 36.169 121.753 -3.116 0.030 0.769 10 GLN_LFZW HA HA H 0 1 N N N -11.904 34.434 119.329 -1.086 0.600 -1.526 11 GLN_LFZW HB2 1HB H 0 1 N N N -11.900 36.845 118.456 0.122 -0.293 1.130 12 GLN_LFZW HB3 2HB H 0 1 N N N -13.547 36.095 118.634 0.157 -1.252 -0.369 13 GLN_LFZW HG2 1HG H 0 1 N N N -13.876 37.279 120.763 1.370 0.584 -1.513 14 GLN_LFZW HG3 2HG H 0 1 N N N -12.208 38.029 120.580 1.335 1.542 -0.014 15 GLN_LFZW HE21 1HE2 H 0 0 N N N -12.270 39.893 120.037 3.895 1.151 -0.760 16 GLN_LFZW HE22 2HE2 H 0 0 N N N -13.352 40.854 119.011 4.623 -0.116 0.068 17 GLN_LFZW H1 H1 H 0 1 N N N -12.343 34.779 121.827 -0.424 2.339 -0.033 18 GLN_LFZW H2 H2 H 0 1 N N N -13.595 35.556 121.124 -2.067 2.256 -0.118 19 GLN_LFZW H3 H3 H 0 1 N N N -13.273 34.003 120.732 -1.279 1.666 1.203 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN_LFZW N CA SING N N 1 GLN_LFZW CA C SING N N 2 GLN_LFZW CA CB SING N N 3 GLN_LFZW CA HA SING N N 4 GLN_LFZW C O DOUB N N 5 GLN_LFZW C OXT SING N N 6 GLN_LFZW CB CG SING N N 7 GLN_LFZW CB HB2 SING N N 8 GLN_LFZW CB HB3 SING N N 9 GLN_LFZW CG CD SING N N 10 GLN_LFZW CG HG2 SING N N 11 GLN_LFZW CG HG3 SING N N 12 GLN_LFZW CD OE1 DOUB N N 13 GLN_LFZW CD NE2 SING N N 14 GLN_LFZW NE2 HE21 SING N N 15 GLN_LFZW NE2 HE22 SING N N 16 GLN_LFZW H1 N SING N N 17 GLN_LFZW H2 N SING N N 18 GLN_LFZW H3 N SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLN_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CCC(=O)N GLN_LFZW InChI InChI 1.01 InChI=1/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/t3-/m0/s1 GLN_LFZW SMILES_CANONICAL CACTVS 3.341 NC(=O)CC[C@H]([NH3+])C([O-])=O GLN_LFZW SMILES CACTVS 3.341 NC(=O)CC[CH]([NH3+])C([O-])=O GLN_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)[C@@H](C(=O)[O-])[NH3+] GLN_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)C(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLN_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-amino-2-ammonio-5-oxopentanoate GLN_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-amino-2-azaniumyl-5-oxo-pentanoate # # data_GLN_LL # _chem_comp.id GLN_LL _chem_comp.name "L-GLUTAMINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N2 O2" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 128.129 _chem_comp.one_letter_code Q _chem_comp.three_letter_code GLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLN_LL N N N -1 1 N N N -12.869 34.883 120.983 1.655 1.414 -0.618 1 GLN_LL CA CA C 0 1 N N S -12.048 35.305 119.985 1.472 0.257 0.269 2 GLN_LL C C C -1 1 N N N -10.724 35.797 120.549 2.586 -0.732 0.040 3 GLN_LL O O O 0 1 N N N -9.691 35.852 119.806 3.733 -0.403 0.223 4 GLN_LL CB CB C 0 1 N N N -12.660 36.476 119.161 0.128 -0.409 -0.033 5 GLN_LL CG CG C 0 1 N N N -13.110 37.658 120.071 -1.008 0.553 0.318 6 GLN_LL CD CD C 0 1 N N N -13.701 38.830 119.321 -2.332 -0.103 0.021 7 GLN_LL OE1 OE1 O 0 1 N N N -14.715 38.686 118.658 -2.364 -1.230 -0.426 8 GLN_LL NE2 NE2 N 0 1 N N N -13.069 39.999 119.445 -3.481 0.562 0.254 9 GLN_LL H H H 0 1 N N N -12.343 34.779 121.827 1.643 1.132 -1.587 10 GLN_LL HA HA H 0 1 N N N -11.904 34.434 119.329 1.488 0.589 1.307 11 GLN_LL HB2 1HB H 0 1 N N N -11.900 36.845 118.456 0.077 -0.661 -1.092 12 GLN_LL HB3 2HB H 0 1 N N N -13.547 36.095 118.634 0.031 -1.317 0.562 13 GLN_LL HG2 1HG H 0 1 N N N -13.876 37.279 120.763 -0.957 0.805 1.377 14 GLN_LL HG3 2HG H 0 1 N N N -12.208 38.029 120.580 -0.912 1.462 -0.277 15 GLN_LL HE21 1HE2 H 0 0 N N N -12.270 39.893 120.037 -3.456 1.463 0.612 16 GLN_LL HE22 2HE2 H 0 0 N N N -13.352 40.854 119.011 -4.333 0.140 0.063 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN_LL N CA SING N N 1 GLN_LL N H SING N N 2 GLN_LL CA C SING N N 3 GLN_LL CA CB SING N N 4 GLN_LL CA HA SING N N 5 GLN_LL C O DOUB N N 6 GLN_LL CB CG SING N N 7 GLN_LL CB HB2 SING N N 8 GLN_LL CB HB3 SING N N 9 GLN_LL CG CD SING N N 10 GLN_LL CG HG2 SING N N 11 GLN_LL CG HG3 SING N N 12 GLN_LL CD OE1 DOUB N N 13 GLN_LL CD NE2 SING N N 14 GLN_LL NE2 HE21 SING N N 15 GLN_LL NE2 HE22 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLN_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CCC(=O)N GLN_LL InChI InChI 1.01 InChI=1/C5H8N2O2/c6-4(3-8)1-2-5(7)9/h4,6H,1-2H2,(H2,7,9)/q-2/t4-/m0/s1 GLN_LL SMILES_CANONICAL CACTVS 3.341 NC(=O)CC[C@H]([NH-])[C-]=O GLN_LL SMILES CACTVS 3.341 NC(=O)CC[CH]([NH-])[C-]=O GLN_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)[C@@H]([C-]=O)[NH-] GLN_LL SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)C([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLN_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(3-amino-3-oxopropyl)-2-oxoethan-2-idyl]azanide GLN_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-amino-1,5-dioxo-pentan-2-yl]azanide # # data_GLN_LSN3 # _chem_comp.id GLN_LSN3 _chem_comp.name "L-GLUTAMINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H10 N2 O2" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 130.145 _chem_comp.one_letter_code Q _chem_comp.three_letter_code GLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLN_LSN3 N N N 1 1 N N N -12.869 34.883 120.983 -1.643 1.382 0.575 1 GLN_LSN3 CA CA C 0 1 N N S -12.048 35.305 119.985 -1.447 0.206 -0.283 2 GLN_LSN3 C C C -1 1 N N N -10.724 35.797 120.549 -2.551 -0.789 -0.033 3 GLN_LSN3 O O O 0 1 N N N -9.691 35.852 119.806 -3.701 -0.475 -0.226 4 GLN_LSN3 CB CB C 0 1 N N N -12.660 36.476 119.161 -0.097 -0.440 0.036 5 GLN_LSN3 CG CG C 0 1 N N N -13.110 37.658 120.071 1.031 0.525 -0.336 6 GLN_LSN3 CD CD C 0 1 N N N -13.701 38.830 119.321 2.360 -0.111 -0.021 7 GLN_LSN3 OE1 OE1 O 0 1 N N N -14.715 38.686 118.658 2.402 -1.226 0.454 8 GLN_LSN3 NE2 NE2 N 0 1 N N N -13.069 39.999 119.445 3.503 0.560 -0.267 9 GLN_LSN3 HA HA H 0 1 N N N -11.904 34.434 119.329 -1.464 0.513 -1.329 10 GLN_LSN3 HB2 1HB H 0 1 N N N -11.900 36.845 118.456 -0.045 -0.666 1.101 11 GLN_LSN3 HB3 2HB H 0 1 N N N -13.547 36.095 118.634 0.010 -1.361 -0.536 12 GLN_LSN3 HG2 1HG H 0 1 N N N -13.876 37.279 120.763 0.979 0.752 -1.401 13 GLN_LSN3 HG3 2HG H 0 1 N N N -12.208 38.029 120.580 0.924 1.447 0.237 14 GLN_LSN3 HE21 1HE2 H 0 0 N N N -12.270 39.893 120.037 3.470 1.452 -0.647 15 GLN_LSN3 HE22 2HE2 H 0 0 N N N -13.352 40.854 119.011 4.359 0.151 -0.064 16 GLN_LSN3 H1 H1 H 0 1 N N N -12.343 34.779 121.827 -0.903 2.047 0.408 17 GLN_LSN3 H2 H2 H 0 1 N N N -13.595 35.556 121.124 -2.533 1.807 0.364 18 GLN_LSN3 H3 H3 H 0 1 N N N -13.273 34.003 120.732 -1.627 1.098 1.543 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN_LSN3 N CA SING N N 1 GLN_LSN3 CA C SING N N 2 GLN_LSN3 CA CB SING N N 3 GLN_LSN3 CA HA SING N N 4 GLN_LSN3 C O DOUB N N 5 GLN_LSN3 CB CG SING N N 6 GLN_LSN3 CB HB2 SING N N 7 GLN_LSN3 CB HB3 SING N N 8 GLN_LSN3 CG CD SING N N 9 GLN_LSN3 CG HG2 SING N N 10 GLN_LSN3 CG HG3 SING N N 11 GLN_LSN3 CD OE1 DOUB N N 12 GLN_LSN3 CD NE2 SING N N 13 GLN_LSN3 NE2 HE21 SING N N 14 GLN_LSN3 NE2 HE22 SING N N 15 GLN_LSN3 H1 N SING N N 16 GLN_LSN3 H2 N SING N N 17 GLN_LSN3 H3 N SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLN_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CCC(=O)N GLN_LSN3 InChI InChI 1.01 InChI=1/C5H9N2O2/c6-4(3-8)1-2-5(7)9/h4H,1-2,6H2,(H2,7,9)/q-1/p+1/t4-/m0/s1 GLN_LSN3 SMILES_CANONICAL CACTVS 3.341 NC(=O)CC[C@H]([NH3+])[C-]=O GLN_LSN3 SMILES CACTVS 3.341 NC(=O)CC[CH]([NH3+])[C-]=O GLN_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)[C@@H]([C-]=O)[NH3+] GLN_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)N)C([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLN_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-amino-2-ammonio-1,5-dioxopentan-1-ide GLN_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-amino-1,5-dioxo-pentan-2-yl]azanium # # data_GLU_LEO2 # _chem_comp.id GLU_LEO2 _chem_comp.name "L-GLUTAMIC ACID C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H7 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 145.113 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LEO2 N N N -1 1 N N N 88.261 -7.660 -9.990 1.274 1.821 -0.211 1 GLU_LEO2 CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.176 0.510 0.444 2 GLU_LEO2 C C C 0 1 N N N 88.474 -6.030 -11.811 2.387 -0.317 0.095 3 GLU_LEO2 O O O 0 1 N N N 88.969 -5.292 -10.943 3.251 0.143 -0.631 4 GLU_LEO2 CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.087 -0.207 -0.037 5 GLU_LEO2 CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.322 0.569 0.425 6 GLU_LEO2 CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.566 -0.137 -0.048 7 GLU_LEO2 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.474 -1.157 -0.690 8 GLU_LEO2 OE2 OE2 O 0 1 N N N 83.260 -8.567 -9.862 -3.775 0.367 0.242 9 GLU_LEO2 OXT OXT O -1 1 N Y N 88.543 -5.801 -13.033 2.502 -1.447 0.540 10 GLU_LEO2 H H H 0 1 N N N 89.257 -7.746 -10.027 1.320 1.722 -1.214 11 GLU_LEO2 HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.128 0.646 1.524 12 GLU_LEO2 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.080 -0.264 -1.125 13 GLU_LEO2 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.114 -1.214 0.379 14 GLU_LEO2 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -1.328 0.626 1.514 15 GLU_LEO2 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -1.294 1.576 0.009 16 GLU_LEO2 HE2 HE2 H 0 1 N N N 82.345 -8.328 -9.951 -4.544 -0.121 -0.083 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LEO2 N CA SING N N 1 GLU_LEO2 N H SING N N 2 GLU_LEO2 CA C SING N N 3 GLU_LEO2 CA CB SING N N 4 GLU_LEO2 CA HA SING N N 5 GLU_LEO2 C O DOUB N N 6 GLU_LEO2 C OXT SING N N 7 GLU_LEO2 CB CG SING N N 8 GLU_LEO2 CB HB2 SING N N 9 GLU_LEO2 CB HB3 SING N N 10 GLU_LEO2 CG CD SING N N 11 GLU_LEO2 CG HG2 SING N N 12 GLU_LEO2 CG HG3 SING N N 13 GLU_LEO2 CD OE1 DOUB N N 14 GLU_LEO2 CD OE2 SING N N 15 GLU_LEO2 OE2 HE2 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LEO2 SMILES ACDLabs 10.04 O=C([O-])C([NH-])CCC(=O)O GLU_LEO2 InChI InChI 1.01 InChI=1/C5H8NO4/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/q-1/p-1/t3-/m0/s1 GLU_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CCC(O)=O)C([O-])=O GLU_LEO2 SMILES CACTVS 3.341 [NH-][CH](CCC(O)=O)C([O-])=O GLU_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)[C@@H](C(=O)[O-])[NH-] GLU_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)C(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-4-carboxybutanoate GLU_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-5-hydroxy-5-oxo-pentanoate # # data_GLU_LEO2_DHE2 # _chem_comp.id GLU_LEO2_DHE2 _chem_comp.name "L-GLUTAMIC ACID-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H6 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 144.105 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LEO2_DHE2 N N N -1 1 N N N 88.261 -7.660 -9.990 1.238 1.821 -0.208 1 GLU_LEO2_DHE2 CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.135 0.509 0.445 2 GLU_LEO2_DHE2 C C C 0 1 N N N 88.474 -6.030 -11.811 2.341 -0.323 0.092 3 GLU_LEO2_DHE2 O O O 0 1 N N N 88.969 -5.292 -10.943 3.206 0.134 -0.636 4 GLU_LEO2_DHE2 CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.132 -0.201 -0.034 5 GLU_LEO2_DHE2 CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.362 0.580 0.432 6 GLU_LEO2_DHE2 CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.611 -0.119 -0.039 7 GLU_LEO2_DHE2 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.525 -1.148 -0.688 8 GLU_LEO2_DHE2 OE2 OE2 O -1 1 N N N 83.260 -8.567 -9.862 -3.707 0.343 0.228 9 GLU_LEO2_DHE2 OXT OXT O -1 1 N Y N 88.543 -5.801 -13.033 2.452 -1.454 0.535 10 GLU_LEO2_DHE2 H H H 0 1 N N N 89.257 -7.746 -10.027 1.281 1.723 -1.212 11 GLU_LEO2_DHE2 HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.090 0.644 1.526 12 GLU_LEO2_DHE2 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.128 -0.257 -1.123 13 GLU_LEO2_DHE2 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.163 -1.209 0.381 14 GLU_LEO2_DHE2 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -1.366 0.636 1.521 15 GLU_LEO2_DHE2 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -1.331 1.588 0.017 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LEO2_DHE2 N CA SING N N 1 GLU_LEO2_DHE2 N H SING N N 2 GLU_LEO2_DHE2 CA C SING N N 3 GLU_LEO2_DHE2 CA CB SING N N 4 GLU_LEO2_DHE2 CA HA SING N N 5 GLU_LEO2_DHE2 C O DOUB N N 6 GLU_LEO2_DHE2 C OXT SING N N 7 GLU_LEO2_DHE2 CB CG SING N N 8 GLU_LEO2_DHE2 CB HB2 SING N N 9 GLU_LEO2_DHE2 CB HB3 SING N N 10 GLU_LEO2_DHE2 CG CD SING N N 11 GLU_LEO2_DHE2 CG HG2 SING N N 12 GLU_LEO2_DHE2 CG HG3 SING N N 13 GLU_LEO2_DHE2 CD OE1 DOUB N N 14 GLU_LEO2_DHE2 CD OE2 SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LEO2_DHE2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCC(=O)[O-] GLU_LEO2_DHE2 InChI InChI 1.01 InChI=1/C5H8NO4/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/q-1/p-2/t3-/m0/s1 GLU_LEO2_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CCC([O-])=O)C([O-])=O GLU_LEO2_DHE2 SMILES CACTVS 3.341 [NH-][CH](CCC([O-])=O)C([O-])=O GLU_LEO2_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])[C@@H](C(=O)[O-])[NH-] GLU_LEO2_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])C(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LEO2_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidylpentanedioate GLU_LEO2_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidylpentanedioate # # data_GLU_LEO2H # _chem_comp.id GLU_LEO2H _chem_comp.name "L-GLUTAMIC ACID C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.121 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LEO2H N N N -1 1 N N N 88.261 -7.660 -9.990 1.200 1.886 -0.104 1 GLU_LEO2H CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.140 0.530 0.458 2 GLU_LEO2H C C C 0 1 N N N 88.474 -6.030 -11.811 2.367 -0.240 0.041 3 GLU_LEO2H O O O 0 1 N N N 88.969 -5.292 -10.943 3.013 0.123 -0.914 4 GLU_LEO2H CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.110 -0.183 -0.062 5 GLU_LEO2H CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.358 0.528 0.465 6 GLU_LEO2H CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.590 -0.173 -0.046 7 GLU_LEO2H OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.480 -1.143 -0.759 8 GLU_LEO2H OE2 OE2 O 0 1 N N N 83.260 -8.567 -9.862 -3.808 0.278 0.290 9 GLU_LEO2H OXT OXT O 0 1 N Y N 88.543 -5.801 -13.033 2.742 -1.329 0.730 10 GLU_LEO2H H H H 0 1 N N N 89.257 -7.746 -10.027 1.238 1.859 -1.112 11 GLU_LEO2H HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.100 0.588 1.545 12 GLU_LEO2H HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.113 -0.163 -1.152 13 GLU_LEO2H HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.108 -1.217 0.283 14 GLU_LEO2H HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -1.355 0.508 1.555 15 GLU_LEO2H HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -1.360 1.563 0.121 16 GLU_LEO2H HE2 HE2 H 0 1 N N N 82.345 -8.328 -9.951 -4.568 -0.205 -0.062 17 GLU_LEO2H HXT HXT H 0 1 N Y N 89.022 -4.994 -13.178 3.535 -1.790 0.425 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LEO2H N CA SING N N 1 GLU_LEO2H N H SING N N 2 GLU_LEO2H CA C SING N N 3 GLU_LEO2H CA CB SING N N 4 GLU_LEO2H CA HA SING N N 5 GLU_LEO2H C O DOUB N N 6 GLU_LEO2H C OXT SING N N 7 GLU_LEO2H CB CG SING N N 8 GLU_LEO2H CB HB2 SING N N 9 GLU_LEO2H CB HB3 SING N N 10 GLU_LEO2H CG CD SING N N 11 GLU_LEO2H CG HG2 SING N N 12 GLU_LEO2H CG HG3 SING N N 13 GLU_LEO2H CD OE1 DOUB N N 14 GLU_LEO2H CD OE2 SING N N 15 GLU_LEO2H OE2 HE2 SING N N 16 GLU_LEO2H OXT HXT SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LEO2H SMILES ACDLabs 10.04 O=C(O)CCC([NH-])C(=O)O GLU_LEO2H InChI InChI 1.01 InChI=1/C5H8NO4/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/q-1/t3-/m0/s1 GLU_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CCC(O)=O)C(O)=O GLU_LEO2H SMILES CACTVS 3.341 [NH-][CH](CCC(O)=O)C(O)=O GLU_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)[C@@H](C(=O)O)[NH-] GLU_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)C(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1,3-dicarboxypropyl]azanide GLU_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1,5-dihydroxy-1,5-dioxo-pentan-2-yl]azanide # # data_GLU_LEO2H_DHE2 # _chem_comp.id GLU_LEO2H_DHE2 _chem_comp.name "L-GLUTAMIC ACID-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H7 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 145.113 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LEO2H_DHE2 N N N -1 1 N N N 88.261 -7.660 -9.990 1.162 1.887 -0.101 1 GLU_LEO2H_DHE2 CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.099 0.530 0.459 2 GLU_LEO2H_DHE2 C C C 0 1 N N N 88.474 -6.030 -11.811 2.322 -0.244 0.037 3 GLU_LEO2H_DHE2 O O O 0 1 N N N 88.969 -5.292 -10.943 2.966 0.118 -0.919 4 GLU_LEO2H_DHE2 CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.155 -0.178 -0.058 5 GLU_LEO2H_DHE2 CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.399 0.537 0.474 6 GLU_LEO2H_DHE2 CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.635 -0.160 -0.035 7 GLU_LEO2H_DHE2 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.530 -1.138 -0.756 8 GLU_LEO2H_DHE2 OE2 OE2 O -1 1 N N N 83.260 -8.567 -9.862 -3.739 0.254 0.275 9 GLU_LEO2H_DHE2 OXT OXT O 0 1 N Y N 88.543 -5.801 -13.033 2.695 -1.335 0.724 10 GLU_LEO2H_DHE2 H H H 0 1 N N N 89.257 -7.746 -10.027 1.197 1.861 -1.109 11 GLU_LEO2H_DHE2 HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.063 0.586 1.546 12 GLU_LEO2H_DHE2 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.162 -0.156 -1.148 13 GLU_LEO2H_DHE2 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.156 -1.212 0.285 14 GLU_LEO2H_DHE2 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -1.392 0.515 1.564 15 GLU_LEO2H_DHE2 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -1.398 1.571 0.131 16 GLU_LEO2H_DHE2 HXT HXT H 0 1 N Y N 89.022 -4.994 -13.178 3.486 -1.798 0.416 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LEO2H_DHE2 N CA SING N N 1 GLU_LEO2H_DHE2 N H SING N N 2 GLU_LEO2H_DHE2 CA C SING N N 3 GLU_LEO2H_DHE2 CA CB SING N N 4 GLU_LEO2H_DHE2 CA HA SING N N 5 GLU_LEO2H_DHE2 C O DOUB N N 6 GLU_LEO2H_DHE2 C OXT SING N N 7 GLU_LEO2H_DHE2 CB CG SING N N 8 GLU_LEO2H_DHE2 CB HB2 SING N N 9 GLU_LEO2H_DHE2 CB HB3 SING N N 10 GLU_LEO2H_DHE2 CG CD SING N N 11 GLU_LEO2H_DHE2 CG HG2 SING N N 12 GLU_LEO2H_DHE2 CG HG3 SING N N 13 GLU_LEO2H_DHE2 CD OE1 DOUB N N 14 GLU_LEO2H_DHE2 CD OE2 SING N N 15 GLU_LEO2H_DHE2 OXT HXT SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LEO2H_DHE2 SMILES ACDLabs 10.04 O=C([O-])CCC([NH-])C(=O)O GLU_LEO2H_DHE2 InChI InChI 1.01 InChI=1/C5H8NO4/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/q-1/p-1/t3-/m0/s1 GLU_LEO2H_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CCC([O-])=O)C(O)=O GLU_LEO2H_DHE2 SMILES CACTVS 3.341 [NH-][CH](CCC([O-])=O)C(O)=O GLU_LEO2H_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])[C@@H](C(=O)O)[NH-] GLU_LEO2H_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])C(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LEO2H_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 (4S)-4-azanidyl-4-carboxybutanoate GLU_LEO2H_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (4S)-4-azanidyl-5-hydroxy-5-oxo-pentanoate # # data_GLU_LFOH # _chem_comp.id GLU_LFOH _chem_comp.name "L-GLUTAMIC ACID FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.129 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LFOH N N N 0 1 N N N 88.261 -7.660 -9.990 1.198 1.861 -0.121 1 GLU_LFOH CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.130 0.510 0.451 2 GLU_LFOH C C C 0 1 N N N 88.474 -6.030 -11.811 2.352 -0.272 0.040 3 GLU_LFOH O O O 0 1 N N N 88.969 -5.292 -10.943 2.999 0.079 -0.918 4 GLU_LFOH CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.125 -0.199 -0.062 5 GLU_LFOH CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.368 0.525 0.460 6 GLU_LFOH CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.605 -0.173 -0.045 7 GLU_LFOH OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.502 -1.149 -0.750 8 GLU_LFOH OE2 OE2 O 0 1 N N N 83.260 -8.567 -9.862 -3.820 0.289 0.289 9 GLU_LFOH OXT OXT O 0 1 N Y N 88.543 -5.801 -13.033 2.720 -1.358 0.737 10 GLU_LFOH HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.091 0.577 1.538 11 GLU_LFOH HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.129 -0.187 -1.152 12 GLU_LFOH HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.130 -1.230 0.291 13 GLU_LFOH HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -1.364 0.513 1.550 14 GLU_LFOH HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -1.363 1.556 0.108 15 GLU_LFOH HE2 HE2 H 0 1 N N N 82.345 -8.328 -9.951 -4.583 -0.191 -0.059 16 GLU_LFOH HXT HXT H 0 1 N Y N 89.022 -4.994 -13.178 3.510 -1.826 0.435 17 GLU_LFOH H1 H1 H 0 1 N N N 89.257 -7.746 -10.027 1.984 2.373 0.252 18 GLU_LFOH H2 H2 H 0 1 N N N 88.012 -6.957 -9.324 1.236 1.826 -1.129 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LFOH N CA SING N N 1 GLU_LFOH CA C SING N N 2 GLU_LFOH CA CB SING N N 3 GLU_LFOH CA HA SING N N 4 GLU_LFOH C O DOUB N N 5 GLU_LFOH C OXT SING N N 6 GLU_LFOH CB CG SING N N 7 GLU_LFOH CB HB2 SING N N 8 GLU_LFOH CB HB3 SING N N 9 GLU_LFOH CG CD SING N N 10 GLU_LFOH CG HG2 SING N N 11 GLU_LFOH CG HG3 SING N N 12 GLU_LFOH CD OE1 DOUB N N 13 GLU_LFOH CD OE2 SING N N 14 GLU_LFOH OE2 HE2 SING N N 15 GLU_LFOH OXT HXT SING N N 16 GLU_LFOH H1 N SING N N 17 GLU_LFOH H2 N SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LFOH SMILES ACDLabs 10.04 O=C(O)CCC(N)C(=O)O GLU_LFOH InChI InChI 1.01 InChI=1/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m0/s1 GLU_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCC(O)=O)C(O)=O GLU_LFOH SMILES CACTVS 3.341 N[CH](CCC(O)=O)C(O)=O GLU_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)[C@@H](C(=O)O)N GLU_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)C(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 "L-glutamic acid" GLU_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-aminopentanedioic acid" # # data_GLU_LFOH_DHE2 # _chem_comp.id GLU_LFOH_DHE2 _chem_comp.name "L-GLUTAMIC ACID-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED OE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.121 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LFOH_DHE2 N N N 0 1 N N N 88.261 -7.660 -9.990 1.161 1.861 -0.118 1 GLU_LFOH_DHE2 CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.090 0.509 0.452 2 GLU_LFOH_DHE2 C C C 0 1 N N N 88.474 -6.030 -11.811 2.307 -0.276 0.036 3 GLU_LFOH_DHE2 O O O 0 1 N N N 88.969 -5.292 -10.943 2.953 0.074 -0.924 4 GLU_LFOH_DHE2 CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.170 -0.194 -0.058 5 GLU_LFOH_DHE2 CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.409 0.534 0.469 6 GLU_LFOH_DHE2 CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.649 -0.159 -0.034 7 GLU_LFOH_DHE2 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.552 -1.143 -0.747 8 GLU_LFOH_DHE2 OE2 OE2 O -1 1 N N N 83.260 -8.567 -9.862 -3.750 0.265 0.273 9 GLU_LFOH_DHE2 OXT OXT O 0 1 N Y N 88.543 -5.801 -13.033 2.673 -1.364 0.731 10 GLU_LFOH_DHE2 HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.054 0.575 1.539 11 GLU_LFOH_DHE2 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.177 -0.181 -1.148 12 GLU_LFOH_DHE2 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.177 -1.226 0.293 13 GLU_LFOH_DHE2 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -1.401 0.521 1.559 14 GLU_LFOH_DHE2 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -1.401 1.565 0.118 15 GLU_LFOH_DHE2 HXT HXT H 0 1 N Y N 89.022 -4.994 -13.178 3.461 -1.835 0.426 16 GLU_LFOH_DHE2 H1 H1 H 0 1 N N N 89.257 -7.746 -10.027 1.949 2.369 0.253 17 GLU_LFOH_DHE2 H2 H2 H 0 1 N N N 88.012 -6.957 -9.324 1.195 1.827 -1.126 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LFOH_DHE2 N CA SING N N 1 GLU_LFOH_DHE2 CA C SING N N 2 GLU_LFOH_DHE2 CA CB SING N N 3 GLU_LFOH_DHE2 CA HA SING N N 4 GLU_LFOH_DHE2 C O DOUB N N 5 GLU_LFOH_DHE2 C OXT SING N N 6 GLU_LFOH_DHE2 CB CG SING N N 7 GLU_LFOH_DHE2 CB HB2 SING N N 8 GLU_LFOH_DHE2 CB HB3 SING N N 9 GLU_LFOH_DHE2 CG CD SING N N 10 GLU_LFOH_DHE2 CG HG2 SING N N 11 GLU_LFOH_DHE2 CG HG3 SING N N 12 GLU_LFOH_DHE2 CD OE1 DOUB N N 13 GLU_LFOH_DHE2 CD OE2 SING N N 14 GLU_LFOH_DHE2 OXT HXT SING N N 15 GLU_LFOH_DHE2 H1 N SING N N 16 GLU_LFOH_DHE2 H2 N SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LFOH_DHE2 SMILES ACDLabs 10.04 O=C([O-])CCC(N)C(=O)O GLU_LFOH_DHE2 InChI InChI 1.01 InChI=1/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/p-1/t3-/m0/s1 GLU_LFOH_DHE2 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCC([O-])=O)C(O)=O GLU_LFOH_DHE2 SMILES CACTVS 3.341 N[CH](CCC([O-])=O)C(O)=O GLU_LFOH_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])[C@@H](C(=O)O)N GLU_LFOH_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])C(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LFOH_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 5-oxido-5-oxo-L-norvaline GLU_LFOH_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (4S)-4-amino-5-hydroxy-5-oxo-pentanoate # # data_GLU_LFZW # _chem_comp.id GLU_LFZW _chem_comp.name "L-GLUTAMIC ACID FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.129 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LFZW N N N 1 1 N N N 88.261 -7.660 -9.990 1.263 1.787 -0.186 1 GLU_LFZW CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.161 0.467 0.449 2 GLU_LFZW C C C 0 1 N N N 88.474 -6.030 -11.811 2.368 -0.360 0.087 3 GLU_LFZW O O O 0 1 N N N 88.969 -5.292 -10.943 2.573 -1.420 0.653 4 GLU_LFZW CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.106 -0.238 -0.041 5 GLU_LFZW CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.337 0.536 0.434 6 GLU_LFZW CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.584 -0.158 -0.049 7 GLU_LFZW OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.497 -1.168 -0.706 8 GLU_LFZW OE2 OE2 O 0 1 N N N 83.260 -8.567 -9.862 -3.792 0.346 0.250 9 GLU_LFZW OXT OXT O -1 1 N Y N 88.543 -5.801 -13.033 3.139 0.032 -0.772 10 GLU_LFZW HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.114 0.586 1.531 11 GLU_LFZW HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.100 -0.279 -1.131 12 GLU_LFZW HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.136 -1.251 0.360 13 GLU_LFZW HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -1.342 0.577 1.523 14 GLU_LFZW HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -1.306 1.549 0.032 15 GLU_LFZW HE2 HE2 H 0 1 N N N 82.345 -8.328 -9.951 -4.562 -0.134 -0.082 16 GLU_LFZW H1 H1 H 0 1 N N N 89.257 -7.746 -10.027 1.307 1.676 -1.188 17 GLU_LFZW H2 H2 H 0 1 N N N 88.012 -6.957 -9.324 0.455 2.341 0.056 18 GLU_LFZW H3 H3 H 0 1 N N N 87.861 -8.535 -9.717 2.099 2.252 0.137 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LFZW N CA SING N N 1 GLU_LFZW CA C SING N N 2 GLU_LFZW CA CB SING N N 3 GLU_LFZW CA HA SING N N 4 GLU_LFZW C O DOUB N N 5 GLU_LFZW C OXT SING N N 6 GLU_LFZW CB CG SING N N 7 GLU_LFZW CB HB2 SING N N 8 GLU_LFZW CB HB3 SING N N 9 GLU_LFZW CG CD SING N N 10 GLU_LFZW CG HG2 SING N N 11 GLU_LFZW CG HG3 SING N N 12 GLU_LFZW CD OE1 DOUB N N 13 GLU_LFZW CD OE2 SING N N 14 GLU_LFZW OE2 HE2 SING N N 15 GLU_LFZW H1 N SING N N 16 GLU_LFZW H2 N SING N N 17 GLU_LFZW H3 N SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LFZW SMILES ACDLabs 10.04 O=C([O-])C([NH3+])CCC(=O)O GLU_LFZW InChI InChI 1.01 InChI=1/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m0/s1 GLU_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CCC(O)=O)C([O-])=O GLU_LFZW SMILES CACTVS 3.341 [NH3+][CH](CCC(O)=O)C([O-])=O GLU_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)[C@@H](C(=O)[O-])[NH3+] GLU_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)C(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-4-carboxybutanoate GLU_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-5-hydroxy-5-oxo-pentanoate # # data_GLU_LFZW_DHE2 # _chem_comp.id GLU_LFZW_DHE2 _chem_comp.name "L-GLUTAMIC ACID-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED OE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.121 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LFZW_DHE2 N N N 1 1 N N N 88.261 -7.660 -9.990 -1.227 1.787 0.184 1 GLU_LFZW_DHE2 CA CA C 0 1 N N S 87.744 -7.276 -11.334 -1.120 0.466 -0.450 2 GLU_LFZW_DHE2 C C C 0 1 N N N 88.474 -6.030 -11.811 -2.323 -0.366 -0.084 3 GLU_LFZW_DHE2 O O O 0 1 N N N 88.969 -5.292 -10.943 -2.524 -1.428 -0.648 4 GLU_LFZW_DHE2 CB CB C 0 1 N N N 86.234 -7.012 -11.267 0.150 -0.232 0.038 5 GLU_LFZW_DHE2 CG CG C 0 1 N N N 85.437 -8.194 -10.746 1.377 0.547 -0.441 6 GLU_LFZW_DHE2 CD CD C 0 1 N N N 83.937 -7.944 -10.707 2.628 -0.141 0.040 7 GLU_LFZW_DHE2 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 2.547 -1.160 0.704 8 GLU_LFZW_DHE2 OE2 OE2 O -1 1 N N N 83.260 -8.567 -9.862 3.722 0.322 -0.236 9 GLU_LFZW_DHE2 OXT OXT O -1 1 N Y N 88.543 -5.801 -13.033 -3.094 0.023 0.777 10 GLU_LFZW_DHE2 HA HA H 0 1 N N N 87.920 -8.099 -12.043 -1.077 0.585 -1.533 11 GLU_LFZW_DHE2 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 0.148 -0.272 1.128 12 GLU_LFZW_DHE2 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 0.185 -1.246 -0.362 13 GLU_LFZW_DHE2 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 1.379 0.586 -1.530 14 GLU_LFZW_DHE2 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 1.342 1.560 -0.041 15 GLU_LFZW_DHE2 H1 H1 H 0 1 N N N 89.257 -7.746 -10.027 -0.423 2.344 -0.062 16 GLU_LFZW_DHE2 H2 H2 H 0 1 N N N 88.012 -6.957 -9.324 -2.066 2.247 -0.138 17 GLU_LFZW_DHE2 H3 H3 H 0 1 N N N 87.861 -8.535 -9.717 -1.268 1.677 1.186 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LFZW_DHE2 N CA SING N N 1 GLU_LFZW_DHE2 CA C SING N N 2 GLU_LFZW_DHE2 CA CB SING N N 3 GLU_LFZW_DHE2 CA HA SING N N 4 GLU_LFZW_DHE2 C O DOUB N N 5 GLU_LFZW_DHE2 C OXT SING N N 6 GLU_LFZW_DHE2 CB CG SING N N 7 GLU_LFZW_DHE2 CB HB2 SING N N 8 GLU_LFZW_DHE2 CB HB3 SING N N 9 GLU_LFZW_DHE2 CG CD SING N N 10 GLU_LFZW_DHE2 CG HG2 SING N N 11 GLU_LFZW_DHE2 CG HG3 SING N N 12 GLU_LFZW_DHE2 CD OE1 DOUB N N 13 GLU_LFZW_DHE2 CD OE2 SING N N 14 GLU_LFZW_DHE2 H1 N SING N N 15 GLU_LFZW_DHE2 H2 N SING N N 16 GLU_LFZW_DHE2 H3 N SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LFZW_DHE2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CCC(=O)[O-] GLU_LFZW_DHE2 InChI InChI 1.01 InChI=1/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/p-1/t3-/m0/s1 GLU_LFZW_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CCC([O-])=O)C([O-])=O GLU_LFZW_DHE2 SMILES CACTVS 3.341 [NH3+][CH](CCC([O-])=O)C([O-])=O GLU_LFZW_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])[C@@H](C(=O)[O-])[NH3+] GLU_LFZW_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])C(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LFZW_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammoniopentanedioate GLU_LFZW_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumylpentanedioate # # data_GLU_LL # _chem_comp.id GLU_LL _chem_comp.name "L-GLUTAMIC ACID - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H7 N O3" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.114 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LL N N N -1 1 N N N 88.261 -7.660 -9.990 1.683 1.420 -0.602 1 GLU_LL CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.498 0.254 0.272 2 GLU_LL C C C -1 1 N N N 88.474 -6.030 -11.811 2.610 -0.735 0.031 3 GLU_LL O O O 0 1 N N N 88.969 -5.292 -10.943 3.758 -0.410 0.217 4 GLU_LL CB CB C 0 1 N N N 86.234 -7.012 -11.267 0.153 -0.406 -0.037 5 GLU_LL CG CG C 0 1 N N N 85.437 -8.194 -10.746 -0.981 0.554 0.326 6 GLU_LL CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.306 -0.095 0.023 7 GLU_LL OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.340 -1.212 -0.437 8 GLU_LL OE2 OE2 O 0 1 N N N 83.260 -8.567 -9.862 -3.449 0.567 0.263 9 GLU_LL H H H 0 1 N N N 89.257 -7.746 -10.027 1.671 1.150 -1.574 10 GLU_LL HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.516 0.573 1.314 11 GLU_LL HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 0.101 -0.646 -1.099 12 GLU_LL HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 0.055 -1.321 0.547 13 GLU_LL HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -0.929 0.794 1.388 14 GLU_LL HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -0.883 1.470 -0.258 15 GLU_LL HE2 HE2 H 0 1 N N N 82.345 -8.328 -9.951 -4.274 0.109 0.052 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LL N CA SING N N 1 GLU_LL N H SING N N 2 GLU_LL CA C SING N N 3 GLU_LL CA CB SING N N 4 GLU_LL CA HA SING N N 5 GLU_LL C O DOUB N N 6 GLU_LL CB CG SING N N 7 GLU_LL CB HB2 SING N N 8 GLU_LL CB HB3 SING N N 9 GLU_LL CG CD SING N N 10 GLU_LL CG HG2 SING N N 11 GLU_LL CG HG3 SING N N 12 GLU_LL CD OE1 DOUB N N 13 GLU_LL CD OE2 SING N N 14 GLU_LL OE2 HE2 SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CCC(=O)O GLU_LL InChI InChI 1.01 InChI=1/C5H7NO3/c6-4(3-7)1-2-5(8)9/h4,6H,1-2H2,(H,8,9)/q-2/t4-/m0/s1 GLU_LL SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CCC(O)=O)[C-]=O GLU_LL SMILES CACTVS 3.341 [NH-][CH](CCC(O)=O)[C-]=O GLU_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)[C@@H]([C-]=O)[NH-] GLU_LL SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)C([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(2-carboxyethyl)-2-oxoethan-2-idyl]azanide GLU_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-hydroxy-1,5-dioxo-pentan-2-yl]azanide # # data_GLU_LL_DHE2 # _chem_comp.id GLU_LL_DHE2 _chem_comp.name "L-GLUTAMIC ACID-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H6 N O3" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 128.106 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LL_DHE2 N N N -1 1 N N N 88.261 -7.660 -9.990 1.646 1.420 -0.595 1 GLU_LL_DHE2 CA CA C 0 1 N N S 87.744 -7.276 -11.334 1.455 0.250 0.273 2 GLU_LL_DHE2 C C C -1 1 N N N 88.474 -6.030 -11.811 2.557 -0.746 0.023 3 GLU_LL_DHE2 O O O 0 1 N N N 88.969 -5.292 -10.943 3.709 -0.431 0.207 4 GLU_LL_DHE2 CB CB C 0 1 N N N 86.234 -7.012 -11.267 0.103 -0.397 -0.035 5 GLU_LL_DHE2 CG CG C 0 1 N N N 85.437 -8.194 -10.746 -1.022 0.571 0.336 6 GLU_LL_DHE2 CD CD C 0 1 N N N 83.937 -7.944 -10.707 -2.354 -0.067 0.033 7 GLU_LL_DHE2 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 -2.398 -1.192 -0.437 8 GLU_LL_DHE2 OE2 OE2 O -1 1 N N N 83.260 -8.567 -9.862 -3.386 0.541 0.257 9 GLU_LL_DHE2 H H H 0 1 N N N 89.257 -7.746 -10.027 1.628 1.155 -1.569 10 GLU_LL_DHE2 HA HA H 0 1 N N N 87.920 -8.099 -12.043 1.478 0.564 1.316 11 GLU_LL_DHE2 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 0.046 -0.631 -1.099 12 GLU_LL_DHE2 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.001 -1.314 0.544 13 GLU_LL_DHE2 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 -0.965 0.804 1.399 14 GLU_LL_DHE2 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 -0.919 1.488 -0.244 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LL_DHE2 N CA SING N N 1 GLU_LL_DHE2 N H SING N N 2 GLU_LL_DHE2 CA C SING N N 3 GLU_LL_DHE2 CA CB SING N N 4 GLU_LL_DHE2 CA HA SING N N 5 GLU_LL_DHE2 C O DOUB N N 6 GLU_LL_DHE2 CB CG SING N N 7 GLU_LL_DHE2 CB HB2 SING N N 8 GLU_LL_DHE2 CB HB3 SING N N 9 GLU_LL_DHE2 CG CD SING N N 10 GLU_LL_DHE2 CG HG2 SING N N 11 GLU_LL_DHE2 CG HG3 SING N N 12 GLU_LL_DHE2 CD OE1 DOUB N N 13 GLU_LL_DHE2 CD OE2 SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LL_DHE2 SMILES ACDLabs 10.04 O=[C-]C([NH-])CCC([O-])=O GLU_LL_DHE2 InChI InChI 1.01 InChI=1/C5H7NO3/c6-4(3-7)1-2-5(8)9/h4,6H,1-2H2,(H,8,9)/q-2/p-1/t4-/m0/s1 GLU_LL_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CCC([O-])=O)[C-]=O GLU_LL_DHE2 SMILES CACTVS 3.341 [NH-][CH](CCC([O-])=O)[C-]=O GLU_LL_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])[C@@H]([C-]=O)[NH-] GLU_LL_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])C([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LL_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 (4S)-4-azanidyl-5-oxopentan-5-idoate GLU_LL_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (4S)-4-azanidyl-5-oxo-pentanoate # # data_GLU_LSN3 # _chem_comp.id GLU_LSN3 _chem_comp.name "L-GLUTAMIC ACID N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O3" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.130 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LSN3 N N N 1 1 N N N 88.261 -7.660 -9.990 -1.671 1.387 0.560 1 GLU_LSN3 CA CA C 0 1 N N S 87.744 -7.276 -11.334 -1.473 0.203 -0.286 2 GLU_LSN3 C C C -1 1 N N N 88.474 -6.030 -11.811 -2.575 -0.791 -0.023 3 GLU_LSN3 O O O 0 1 N N N 88.969 -5.292 -10.943 -3.726 -0.482 -0.219 4 GLU_LSN3 CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.122 -0.437 0.040 5 GLU_LSN3 CG CG C 0 1 N N N 85.437 -8.194 -10.746 1.004 0.526 -0.343 6 GLU_LSN3 CD CD C 0 1 N N N 83.937 -7.944 -10.707 2.335 -0.103 -0.022 7 GLU_LSN3 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 2.379 -1.209 0.463 8 GLU_LSN3 OE2 OE2 O 0 1 N N N 83.260 -8.567 -9.862 3.471 0.564 -0.275 9 GLU_LSN3 HA HA H 0 1 N N N 87.920 -8.099 -12.043 -1.492 0.498 -1.335 10 GLU_LSN3 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.069 -0.651 1.108 11 GLU_LSN3 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 -0.014 -1.364 -0.522 12 GLU_LSN3 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 0.951 0.741 -1.410 13 GLU_LSN3 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 0.895 1.454 0.219 14 GLU_LSN3 HE2 HE2 H 0 1 N N N 82.345 -8.328 -9.951 4.301 0.120 -0.053 15 GLU_LSN3 H1 H1 H 0 1 N N N 89.257 -7.746 -10.027 -0.933 2.053 0.384 16 GLU_LSN3 H2 H2 H 0 1 N N N 88.012 -6.957 -9.324 -2.562 1.809 0.345 17 GLU_LSN3 H3 H3 H 0 1 N N N 87.861 -8.535 -9.717 -1.653 1.114 1.531 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LSN3 N CA SING N N 1 GLU_LSN3 CA C SING N N 2 GLU_LSN3 CA CB SING N N 3 GLU_LSN3 CA HA SING N N 4 GLU_LSN3 C O DOUB N N 5 GLU_LSN3 CB CG SING N N 6 GLU_LSN3 CB HB2 SING N N 7 GLU_LSN3 CB HB3 SING N N 8 GLU_LSN3 CG CD SING N N 9 GLU_LSN3 CG HG2 SING N N 10 GLU_LSN3 CG HG3 SING N N 11 GLU_LSN3 CD OE1 DOUB N N 12 GLU_LSN3 CD OE2 SING N N 13 GLU_LSN3 OE2 HE2 SING N N 14 GLU_LSN3 H1 N SING N N 15 GLU_LSN3 H2 N SING N N 16 GLU_LSN3 H3 N SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CCC(=O)O GLU_LSN3 InChI InChI 1.01 InChI=1/C5H8NO3/c6-4(3-7)1-2-5(8)9/h4H,1-2,6H2,(H,8,9)/q-1/p+1/t4-/m0/s1 GLU_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CCC(O)=O)[C-]=O GLU_LSN3 SMILES CACTVS 3.341 [NH3+][CH](CCC(O)=O)[C-]=O GLU_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)[C@@H]([C-]=O)[NH3+] GLU_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)O)C([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-4-carboxy-1-oxobutan-1-ide GLU_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-hydroxy-1,5-dioxo-pentan-2-yl]azanium # # data_GLU_LSN3_DHE2 # _chem_comp.id GLU_LSN3_DHE2 _chem_comp.name "L-GLUTAMIC ACID-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N O3" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 130.122 _chem_comp.one_letter_code E _chem_comp.three_letter_code GLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLU_LSN3_DHE2 N N N 1 1 N N N 88.261 -7.660 -9.990 -1.634 1.387 0.554 1 GLU_LSN3_DHE2 CA CA C 0 1 N N S 87.744 -7.276 -11.334 -1.430 0.199 -0.286 2 GLU_LSN3_DHE2 C C C -1 1 N N N 88.474 -6.030 -11.811 -2.523 -0.802 -0.016 3 GLU_LSN3_DHE2 O O O 0 1 N N N 88.969 -5.292 -10.943 -3.677 -0.503 -0.209 4 GLU_LSN3_DHE2 CB CB C 0 1 N N N 86.234 -7.012 -11.267 -0.072 -0.427 0.039 5 GLU_LSN3_DHE2 CG CG C 0 1 N N N 85.437 -8.194 -10.746 1.044 0.543 -0.353 6 GLU_LSN3_DHE2 CD CD C 0 1 N N N 83.937 -7.944 -10.707 2.381 -0.074 -0.033 7 GLU_LSN3_DHE2 OE1 OE1 O 0 1 N N N 83.425 -7.140 -11.520 2.436 -1.187 0.462 8 GLU_LSN3_DHE2 OE2 OE2 O -1 1 N N N 83.260 -8.567 -9.862 3.408 0.539 -0.269 9 GLU_LSN3_DHE2 HA HA H 0 1 N N N 87.920 -8.099 -12.043 -1.454 0.489 -1.337 10 GLU_LSN3_DHE2 HB2 1HB H 0 1 N N N 86.064 -6.160 -10.592 -0.014 -0.636 1.107 11 GLU_LSN3_DHE2 HB3 2HB H 0 1 N N N 85.891 -6.814 -12.293 0.042 -1.357 -0.520 12 GLU_LSN3_DHE2 HG2 1HG H 0 1 N N N 85.624 -9.052 -11.408 0.987 0.751 -1.421 13 GLU_LSN3_DHE2 HG3 2HG H 0 1 N N N 85.764 -8.377 -9.712 0.930 1.472 0.206 14 GLU_LSN3_DHE2 H1 H1 H 0 1 N N N 89.257 -7.746 -10.027 -0.902 2.057 0.373 15 GLU_LSN3_DHE2 H2 H2 H 0 1 N N N 88.012 -6.957 -9.324 -2.530 1.800 0.340 16 GLU_LSN3_DHE2 H3 H3 H 0 1 N N N 87.861 -8.535 -9.717 -1.612 1.118 1.527 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU_LSN3_DHE2 N CA SING N N 1 GLU_LSN3_DHE2 CA C SING N N 2 GLU_LSN3_DHE2 CA CB SING N N 3 GLU_LSN3_DHE2 CA HA SING N N 4 GLU_LSN3_DHE2 C O DOUB N N 5 GLU_LSN3_DHE2 CB CG SING N N 6 GLU_LSN3_DHE2 CB HB2 SING N N 7 GLU_LSN3_DHE2 CB HB3 SING N N 8 GLU_LSN3_DHE2 CG CD SING N N 9 GLU_LSN3_DHE2 CG HG2 SING N N 10 GLU_LSN3_DHE2 CG HG3 SING N N 11 GLU_LSN3_DHE2 CD OE1 DOUB N N 12 GLU_LSN3_DHE2 CD OE2 SING N N 13 GLU_LSN3_DHE2 H1 N SING N N 14 GLU_LSN3_DHE2 H2 N SING N N 15 GLU_LSN3_DHE2 H3 N SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLU_LSN3_DHE2 SMILES ACDLabs 10.04 [O-]C(=O)CCC([C-]=O)[NH3+] GLU_LSN3_DHE2 InChI InChI 1.01 InChI=1/C5H8NO3/c6-4(3-7)1-2-5(8)9/h4H,1-2,6H2,(H,8,9)/q-1/t4-/m0/s1 GLU_LSN3_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CCC([O-])=O)[C-]=O GLU_LSN3_DHE2 SMILES CACTVS 3.341 [NH3+][CH](CCC([O-])=O)[C-]=O GLU_LSN3_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])[C@@H]([C-]=O)[NH3+] GLU_LSN3_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(=O)[O-])C([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLU_LSN3_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 (4S)-4-ammonio-5-oxopentan-5-idoate GLU_LSN3_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (4S)-4-azaniumyl-5-oxo-pentanoate # # data_GLY_LEO2 # _chem_comp.id GLY_LEO2 _chem_comp.name "L-GLYCINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C2 H3 N O2" _chem_comp.mon_nstd_parent_comp_id GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 73.051 _chem_comp.one_letter_code G _chem_comp.three_letter_code GLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLY_LEO2 N N N -1 1 N N N 25.463 35.609 47.047 1.892 -0.186 0.000 1 GLY_LEO2 CA CA C 0 1 N N N 25.329 37.024 46.850 0.771 0.763 -0.000 2 GLY_LEO2 C C C 0 1 N N N 26.081 37.335 45.572 -0.531 0.004 0.000 3 GLY_LEO2 O O O 0 1 N N N 27.024 36.627 45.222 -0.525 -1.215 0.000 4 GLY_LEO2 OXT OXT O -1 1 N Y N 25.702 38.256 44.874 -1.590 0.609 -0.000 5 GLY_LEO2 H H H 0 1 N N N 25.494 35.150 46.159 2.776 0.299 -0.000 6 GLY_LEO2 HA2 1HA H 0 1 N N N 24.270 37.305 46.757 0.825 1.390 0.890 7 GLY_LEO2 HA3 2HA H 0 1 N N N 25.731 37.590 47.703 0.825 1.390 -0.890 8 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY_LEO2 N CA SING N N 1 GLY_LEO2 N H SING N N 2 GLY_LEO2 CA C SING N N 3 GLY_LEO2 CA HA2 SING N N 4 GLY_LEO2 CA HA3 SING N N 5 GLY_LEO2 C O DOUB N N 6 GLY_LEO2 C OXT SING N N 7 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLY_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C[NH-] GLY_LEO2 InChI InChI 1.01 InChI=1/C2H4NO2/c3-1-2(4)5/h3H,1H2,(H,4,5)/q-1/p-1 GLY_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-]CC([O-])=O GLY_LEO2 SMILES CACTVS 3.341 [NH-]CC([O-])=O GLY_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C(=O)[O-])[NH-] GLY_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLY_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 azanidylacetate GLY_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-azanidylethanoate # # data_GLY_LEO2H # _chem_comp.id GLY_LEO2H _chem_comp.name "L-GLYCINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C2 H4 N O2" _chem_comp.mon_nstd_parent_comp_id GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 74.059 _chem_comp.one_letter_code G _chem_comp.three_letter_code GLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLY_LEO2H N N N -1 1 N N N 25.463 35.609 47.047 1.955 -0.133 0.000 1 GLY_LEO2H CA CA C 0 1 N N N 25.329 37.024 46.850 0.800 0.775 -0.000 2 GLY_LEO2H C C C 0 1 N N N 26.081 37.335 45.572 -0.473 -0.031 0.000 3 GLY_LEO2H O O O 0 1 N N N 27.024 36.627 45.222 -0.424 -1.238 0.000 4 GLY_LEO2H OXT OXT O 0 1 N Y N 25.702 38.256 44.874 -1.662 0.592 -0.000 5 GLY_LEO2H H H H 0 1 N N N 25.494 35.150 46.159 2.821 0.384 -0.000 6 GLY_LEO2H HA2 1HA H 0 1 N N N 24.270 37.305 46.757 0.832 1.404 0.890 7 GLY_LEO2H HA3 2HA H 0 1 N N N 25.731 37.590 47.703 0.832 1.404 -0.890 8 GLY_LEO2H HXT HXT H 0 1 N Y N 26.236 38.300 44.090 -2.451 0.033 0.000 9 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY_LEO2H N CA SING N N 1 GLY_LEO2H N H SING N N 2 GLY_LEO2H CA C SING N N 3 GLY_LEO2H CA HA2 SING N N 4 GLY_LEO2H CA HA3 SING N N 5 GLY_LEO2H C O DOUB N N 6 GLY_LEO2H C OXT SING N N 7 GLY_LEO2H OXT HXT SING N N 8 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLY_LEO2H SMILES ACDLabs 10.04 O=C(O)C[NH-] GLY_LEO2H InChI InChI 1.01 InChI=1/C2H4NO2/c3-1-2(4)5/h3H,1H2,(H,4,5)/q-1 GLY_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-]CC(O)=O GLY_LEO2H SMILES CACTVS 3.341 [NH-]CC(O)=O GLY_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C(=O)O)[NH-] GLY_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLY_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 (carboxymethyl)azanide GLY_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 carboxymethylazanide # # data_GLY_LFOH # _chem_comp.id GLY_LFOH _chem_comp.name "L-GLYCINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C2 H5 N O2" _chem_comp.mon_nstd_parent_comp_id GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 75.067 _chem_comp.one_letter_code G _chem_comp.three_letter_code GLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLY_LFOH N N N 0 1 N N N 25.463 35.609 47.047 1.931 0.090 -0.034 1 GLY_LFOH CA CA C 0 1 N N N 25.329 37.024 46.850 0.761 -0.799 -0.008 2 GLY_LFOH C C C 0 1 N N N 26.081 37.335 45.572 -0.498 0.029 -0.005 3 GLY_LFOH O O O 0 1 N N N 27.024 36.627 45.222 -0.429 1.235 -0.023 4 GLY_LFOH OXT OXT O 0 1 N Y N 25.702 38.256 44.874 -1.697 -0.574 0.018 5 GLY_LFOH HA2 1HA H 0 1 N N N 24.270 37.305 46.757 0.772 -1.440 -0.889 6 GLY_LFOH HA3 2HA H 0 1 N N N 25.731 37.590 47.703 0.793 -1.415 0.891 7 GLY_LFOH HXT HXT H 0 1 N Y N 26.236 38.300 44.090 -2.477 -0.002 0.019 8 GLY_LFOH H1 H1 H 0 1 N N N 25.494 35.150 46.159 1.910 0.738 0.738 9 GLY_LFOH H2 H2 H 0 1 N N N 26.307 35.421 47.549 2.788 -0.442 -0.037 10 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY_LFOH N CA SING N N 1 GLY_LFOH CA C SING N N 2 GLY_LFOH CA HA2 SING N N 3 GLY_LFOH CA HA3 SING N N 4 GLY_LFOH C O DOUB N N 5 GLY_LFOH C OXT SING N N 6 GLY_LFOH OXT HXT SING N N 7 GLY_LFOH H1 N SING N N 8 GLY_LFOH H2 N SING N N 9 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLY_LFOH SMILES ACDLabs 10.04 O=C(O)CN GLY_LFOH InChI InChI 1.01 InChI=1/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5) GLY_LFOH SMILES_CANONICAL CACTVS 3.341 NCC(O)=O GLY_LFOH SMILES CACTVS 3.341 NCC(O)=O GLY_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C(=O)O)N GLY_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLY_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 glycine GLY_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-aminoethanoic acid" # # data_GLY_LFZW # _chem_comp.id GLY_LFZW _chem_comp.name "L-GLYCINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C2 H5 N O2" _chem_comp.mon_nstd_parent_comp_id GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 75.067 _chem_comp.one_letter_code G _chem_comp.three_letter_code GLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLY_LFZW N N N 1 1 N N N 25.463 35.609 47.047 1.847 -0.103 0.000 1 GLY_LFZW CA CA C 0 1 N N N 25.329 37.024 46.850 0.694 0.808 -0.000 2 GLY_LFZW C C C 0 1 N N N 26.081 37.335 45.572 -0.581 0.004 -0.000 3 GLY_LFZW O O O 0 1 N N N 27.024 36.627 45.222 -0.533 -1.214 0.000 4 GLY_LFZW OXT OXT O -1 1 N Y N 25.702 38.256 44.874 -1.660 0.572 -0.000 5 GLY_LFZW HA2 1HA H 0 1 N N N 24.270 37.305 46.757 0.727 1.436 0.890 6 GLY_LFZW HA3 2HA H 0 1 N N N 25.731 37.590 47.703 0.727 1.436 -0.890 7 GLY_LFZW H1 H1 H 0 1 N N N 25.494 35.150 46.159 1.816 -0.684 0.824 8 GLY_LFZW H2 H2 H 0 1 N N N 26.307 35.421 47.549 1.816 -0.684 -0.824 9 GLY_LFZW H3 H3 H 0 1 N N N 24.681 35.270 47.570 2.700 0.435 -0.000 10 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY_LFZW N CA SING N N 1 GLY_LFZW CA C SING N N 2 GLY_LFZW CA HA2 SING N N 3 GLY_LFZW CA HA3 SING N N 4 GLY_LFZW C O DOUB N N 5 GLY_LFZW C OXT SING N N 6 GLY_LFZW H1 N SING N N 7 GLY_LFZW H2 N SING N N 8 GLY_LFZW H3 N SING N N 9 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLY_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C[NH3+] GLY_LFZW InChI InChI 1.01 InChI=1/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5) GLY_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+]CC([O-])=O GLY_LFZW SMILES CACTVS 3.341 [NH3+]CC([O-])=O GLY_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C(=O)[O-])[NH3+] GLY_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLY_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 ammonioacetate GLY_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-azaniumylethanoate # # data_GLY_LL # _chem_comp.id GLY_LL _chem_comp.name "L-GLYCINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C2 H3 N O" _chem_comp.mon_nstd_parent_comp_id GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 57.051 _chem_comp.one_letter_code G _chem_comp.three_letter_code GLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLY_LL N N N -1 1 N N N 25.463 35.609 47.047 1.794 -0.297 0.000 1 GLY_LL CA CA C 0 1 N N N 25.329 37.024 46.850 0.561 0.500 -0.000 2 GLY_LL C C C -1 1 N N N 26.081 37.335 45.572 -0.632 -0.420 0.000 3 GLY_LL O O O 0 1 N N N 27.024 36.627 45.222 -1.749 0.039 -0.000 4 GLY_LL H H H 0 1 N N N 25.494 35.150 46.159 2.609 0.298 -0.000 5 GLY_LL HA2 1HA H 0 1 N N N 24.270 37.305 46.757 0.535 1.129 0.890 6 GLY_LL HA3 2HA H 0 1 N N N 25.731 37.590 47.703 0.535 1.129 -0.890 7 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY_LL N CA SING N N 1 GLY_LL N H SING N N 2 GLY_LL CA C SING N N 3 GLY_LL CA HA2 SING N N 4 GLY_LL CA HA3 SING N N 5 GLY_LL C O DOUB N N 6 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLY_LL SMILES ACDLabs 10.04 O=[C-]C[NH-] GLY_LL InChI InChI 1.01 InChI=1/C2H3NO/c3-1-2-4/h3H,1H2/q-2 GLY_LL SMILES_CANONICAL CACTVS 3.341 [NH-]C[C-]=O GLY_LL SMILES CACTVS 3.341 [NH-]C[C-]=O GLY_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C-]=O)[NH-] GLY_LL SMILES "OpenEye OEToolkits" 1.5.0 C([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLY_LL "SYSTEMATIC NAME" ACDLabs 10.04 (2-oxoethan-2-idyl)azanide GLY_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-oxoethylazanide # # data_GLY_LSN3 # _chem_comp.id GLY_LSN3 _chem_comp.name "L-GLYCINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C2 H5 N O" _chem_comp.mon_nstd_parent_comp_id GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 59.067 _chem_comp.one_letter_code G _chem_comp.three_letter_code GLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal GLY_LSN3 N N N 1 1 N N N 25.463 35.609 47.047 1.740 -0.217 0.000 1 GLY_LSN3 CA CA C 0 1 N N N 25.329 37.024 46.850 0.484 0.544 -0.000 2 GLY_LSN3 C C C -1 1 N N N 26.081 37.335 45.572 -0.683 -0.410 0.000 3 GLY_LSN3 O O O 0 1 N N N 27.024 36.627 45.222 -1.812 0.016 -0.000 4 GLY_LSN3 HA2 1HA H 0 1 N N N 24.270 37.305 46.757 0.439 1.172 0.890 5 GLY_LSN3 HA3 2HA H 0 1 N N N 25.731 37.590 47.703 0.439 1.172 -0.890 6 GLY_LSN3 H1 H1 H 0 1 N N N 25.494 35.150 46.159 2.520 0.422 -0.000 7 GLY_LSN3 H2 H2 H 0 1 N N N 26.307 35.421 47.549 1.781 -0.798 0.824 8 GLY_LSN3 H3 H3 H 0 1 N N N 24.681 35.270 47.570 1.781 -0.798 -0.824 9 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY_LSN3 N CA SING N N 1 GLY_LSN3 CA C SING N N 2 GLY_LSN3 CA HA2 SING N N 3 GLY_LSN3 CA HA3 SING N N 4 GLY_LSN3 C O DOUB N N 5 GLY_LSN3 H1 N SING N N 6 GLY_LSN3 H2 N SING N N 7 GLY_LSN3 H3 N SING N N 8 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLY_LSN3 SMILES ACDLabs 10.04 O=[C-]C[NH3+] GLY_LSN3 InChI InChI 1.01 InChI=1/C2H4NO/c3-1-2-4/h1,3H2/q-1/p+1 GLY_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+]C[C-]=O GLY_LSN3 SMILES CACTVS 3.341 [NH3+]C[C-]=O GLY_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C-]=O)[NH3+] GLY_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLY_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 2-ammonio-1-oxoethanide GLY_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-oxoethylazanium # # data_HIS_LEO2 # _chem_comp.id HIS_LEO2 _chem_comp.name "L-HISTIDINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H8 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 154.147 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LEO2 N N N -1 1 N N N 33.472 42.685 -4.610 0.914 1.472 0.737 1 HIS_LEO2 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.104 0.049 0.423 2 HIS_LEO2 C C C 0 1 N N N 33.773 42.279 -7.040 2.546 -0.196 0.058 3 HIS_LEO2 O O O 0 1 N N N 33.497 43.444 -7.337 2.959 -1.337 -0.060 4 HIS_LEO2 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.207 -0.338 -0.755 5 HIS_LEO2 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.238 -0.209 -0.349 6 HIS_LEO2 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -2.024 0.857 -0.558 7 HIS_LEO2 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.969 -1.148 0.283 8 HIS_LEO2 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.213 0.617 -0.076 9 HIS_LEO2 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.221 -0.623 0.458 10 HIS_LEO2 OXT OXT O -1 1 N Y N 34.382 41.455 -7.879 3.299 0.747 -0.119 11 HIS_LEO2 H H H 0 1 N N N 33.485 42.227 -3.721 1.150 2.051 -0.055 12 HIS_LEO2 HA HA H 0 1 N N N 34.155 40.908 -5.439 0.842 -0.553 1.292 13 HIS_LEO2 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.408 0.324 -1.598 14 HIS_LEO2 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.413 -1.368 -1.045 15 HIS_LEO2 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.752 1.678 -0.998 16 HIS_LEO2 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.632 -2.126 0.591 17 HIS_LEO2 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -4.051 1.297 -0.102 18 HIS_LEO2 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -3.974 -1.061 0.884 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LEO2 N CA SING N N 1 HIS_LEO2 N H SING N N 2 HIS_LEO2 CA C SING N N 3 HIS_LEO2 CA CB SING N N 4 HIS_LEO2 CA HA SING N N 5 HIS_LEO2 C O DOUB N N 6 HIS_LEO2 C OXT SING N N 7 HIS_LEO2 CB CG SING N N 8 HIS_LEO2 CB HB2 SING N N 9 HIS_LEO2 CB HB3 SING N N 10 HIS_LEO2 CG ND1 SING Y N 11 HIS_LEO2 CG CD2 DOUB Y N 12 HIS_LEO2 ND1 CE1 DOUB Y N 13 HIS_LEO2 ND1 HD1 SING N N 14 HIS_LEO2 CD2 NE2 SING Y N 15 HIS_LEO2 CD2 HD2 SING N N 16 HIS_LEO2 CE1 NE2 SING Y N 17 HIS_LEO2 CE1 HE1 SING N N 18 HIS_LEO2 NE2 HE2 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LEO2 SMILES ACDLabs 10.04 O=C([O-])C([NH-])Cc1cnc[nH+]1 HIS_LEO2 InChI InChI 1.01 InChI=1/C6H8N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5,7H,1H2,(H,8,9)(H,10,11)/q-1/t5-/m0/s1 HIS_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]c[nH+]1)C([O-])=O HIS_LEO2 SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]c[nH+]1)C([O-])=O HIS_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)C[C@@H](C(=O)[O-])[NH-] HIS_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-(1H-imidazol-3-ium-4-yl)propanoate HIS_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-(1H-imidazol-3-ium-4-yl)propanoate # # data_HIS_LEO2_DHD1 # _chem_comp.id HIS_LEO2_DHD1 _chem_comp.name "L-HISTIDINE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED ND1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H7 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 153.139 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LEO2_DHD1 N N N -1 1 N N N 33.472 42.685 -4.610 0.902 1.398 0.876 1 HIS_LEO2_DHD1 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.095 0.016 0.415 2 HIS_LEO2_DHD1 C C C 0 1 N N N 33.773 42.279 -7.040 2.535 -0.185 0.020 3 HIS_LEO2_DHD1 O O O 0 1 N N N 33.497 43.444 -7.337 2.951 -1.306 -0.219 4 HIS_LEO2_DHD1 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.193 -0.249 -0.792 5 HIS_LEO2_DHD1 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.251 -0.169 -0.368 6 HIS_LEO2_DHD1 ND1 ND1 N 0 1 Y N N 32.539 38.710 -6.414 -1.821 -0.869 0.624 7 HIS_LEO2_DHD1 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -2.193 0.624 -0.914 8 HIS_LEO2_DHD1 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.083 -0.545 0.710 9 HIS_LEO2_DHD1 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.356 0.384 -0.232 10 HIS_LEO2_DHD1 OXT OXT O -1 1 N Y N 34.382 41.455 -7.879 3.284 0.774 -0.062 11 HIS_LEO2_DHD1 H H H 0 1 N N N 33.485 42.227 -3.721 1.133 2.057 0.149 12 HIS_LEO2_DHD1 HA HA H 0 1 N N N 34.155 40.908 -5.439 0.839 -0.674 1.219 13 HIS_LEO2_DHD1 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.387 0.498 -1.562 14 HIS_LEO2_DHD1 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.400 -1.243 -1.189 15 HIS_LEO2_DHD1 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -2.058 1.316 -1.732 16 HIS_LEO2_DHD1 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.790 -0.950 1.418 17 HIS_LEO2_DHD1 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -4.215 0.805 -0.393 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LEO2_DHD1 N CA SING N N 1 HIS_LEO2_DHD1 N H SING N N 2 HIS_LEO2_DHD1 CA C SING N N 3 HIS_LEO2_DHD1 CA CB SING N N 4 HIS_LEO2_DHD1 CA HA SING N N 5 HIS_LEO2_DHD1 C O DOUB N N 6 HIS_LEO2_DHD1 C OXT SING N N 7 HIS_LEO2_DHD1 CB CG SING N N 8 HIS_LEO2_DHD1 CB HB2 SING N N 9 HIS_LEO2_DHD1 CB HB3 SING N N 10 HIS_LEO2_DHD1 CG ND1 SING Y N 11 HIS_LEO2_DHD1 CG CD2 DOUB Y N 12 HIS_LEO2_DHD1 ND1 CE1 DOUB Y N 13 HIS_LEO2_DHD1 CD2 NE2 SING Y N 14 HIS_LEO2_DHD1 CD2 HD2 SING N N 15 HIS_LEO2_DHD1 CE1 NE2 SING Y N 16 HIS_LEO2_DHD1 CE1 HE1 SING N N 17 HIS_LEO2_DHD1 NE2 HE2 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LEO2_DHD1 SMILES ACDLabs 10.04 O=C([O-])C([NH-])Cc1ncnc1 HIS_LEO2_DHD1 InChI InChI 1.01 InChI=1/C6H8N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5,7H,1H2,(H,8,9)(H,10,11)/q-1/p-1/t5-/m0/s1 HIS_LEO2_DHD1 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]cn1)C([O-])=O HIS_LEO2_DHD1 SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]cn1)C([O-])=O HIS_LEO2_DHD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)C[C@@H](C(=O)[O-])[NH-] HIS_LEO2_DHD1 SMILES "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LEO2_DHD1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-(1H-imidazol-4-yl)propanoate HIS_LEO2_DHD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-(1H-imidazol-4-yl)propanoate # # data_HIS_LEO2_DHE2 # _chem_comp.id HIS_LEO2_DHE2 _chem_comp.name "L-HISTIDINE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H7 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 153.139 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LEO2_DHE2 N N N -1 1 N N N 33.472 42.685 -4.610 0.894 1.524 0.614 1 HIS_LEO2_DHE2 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.087 0.082 0.415 2 HIS_LEO2_DHE2 C C C 0 1 N N N 33.773 42.279 -7.040 2.527 -0.189 0.066 3 HIS_LEO2_DHE2 O O O 0 1 N N N 33.497 43.444 -7.337 3.320 0.734 -0.011 4 HIS_LEO2_DHE2 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.186 -0.400 -0.724 5 HIS_LEO2_DHE2 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.258 -0.243 -0.324 6 HIS_LEO2_DHE2 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -2.074 0.818 -0.614 7 HIS_LEO2_DHE2 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.996 -1.120 0.384 8 HIS_LEO2_DHE2 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.281 0.553 -0.069 9 HIS_LEO2_DHE2 NE2 NE2 N -1 1 Y N N 31.439 38.453 -8.237 -3.227 -0.607 0.526 10 HIS_LEO2_DHE2 OXT OXT O -1 1 N Y N 34.382 41.455 -7.879 2.900 -1.332 -0.141 11 HIS_LEO2_DHE2 H H H 0 1 N N N 33.485 42.227 -3.721 1.127 2.039 -0.222 12 HIS_LEO2_DHE2 HA HA H 0 1 N N N 34.155 40.908 -5.439 0.829 -0.449 1.332 13 HIS_LEO2_DHE2 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.382 0.192 -1.618 14 HIS_LEO2_DHE2 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.393 -1.450 -0.931 15 HIS_LEO2_DHE2 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.831 1.610 -1.117 16 HIS_LEO2_DHE2 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.656 -2.070 0.769 17 HIS_LEO2_DHE2 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -4.148 1.195 -0.119 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LEO2_DHE2 N CA SING N N 1 HIS_LEO2_DHE2 N H SING N N 2 HIS_LEO2_DHE2 CA C SING N N 3 HIS_LEO2_DHE2 CA CB SING N N 4 HIS_LEO2_DHE2 CA HA SING N N 5 HIS_LEO2_DHE2 C O DOUB N N 6 HIS_LEO2_DHE2 C OXT SING N N 7 HIS_LEO2_DHE2 CB CG SING N N 8 HIS_LEO2_DHE2 CB HB2 SING N N 9 HIS_LEO2_DHE2 CB HB3 SING N N 10 HIS_LEO2_DHE2 CG ND1 SING Y N 11 HIS_LEO2_DHE2 CG CD2 DOUB Y N 12 HIS_LEO2_DHE2 ND1 CE1 DOUB Y N 13 HIS_LEO2_DHE2 ND1 HD1 SING N N 14 HIS_LEO2_DHE2 CD2 NE2 SING Y N 15 HIS_LEO2_DHE2 CD2 HD2 SING N N 16 HIS_LEO2_DHE2 CE1 NE2 SING Y N 17 HIS_LEO2_DHE2 CE1 HE1 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LEO2_DHE2 SMILES ACDLabs 10.04 O=C([O-])C([NH-])Cc1[nH+]c[n-]c1 HIS_LEO2_DHE2 InChI InChI 1.01 InChI=1/C6H8N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5,7H,1H2,(H2,8,9,10,11)/q-1/p-1/t5-/m0/s1 HIS_LEO2_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[n-]c[nH+]1)C([O-])=O HIS_LEO2_DHE2 SMILES CACTVS 3.341 [NH-][CH](Cc1c[n-]c[nH+]1)C([O-])=O HIS_LEO2_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)C[C@@H](C(=O)[O-])[NH-] HIS_LEO2_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LEO2_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-imidazol-3-ium-1-id-4-ylpropanoate HIS_LEO2_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-imidazol-3-ium-1-id-4-yl-propanoate # # data_HIS_LEO2H # _chem_comp.id HIS_LEO2H _chem_comp.name "L-HISTIDINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H9 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 155.155 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LEO2H N N N -1 1 N N N 33.472 42.685 -4.610 0.853 1.462 0.830 1 HIS_LEO2H CA CA C 0 1 N N S 33.414 41.686 -5.673 1.072 0.067 0.428 2 HIS_LEO2H C C C 0 1 N N N 33.773 42.279 -7.040 2.519 -0.126 0.051 3 HIS_LEO2H O O O 0 1 N N N 33.497 43.444 -7.337 3.200 0.828 -0.240 4 HIS_LEO2H CB CB C 0 1 N N N 32.005 41.080 -5.734 0.184 -0.264 -0.773 5 HIS_LEO2H CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.264 -0.190 -0.362 6 HIS_LEO2H ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -2.071 0.872 -0.506 7 HIS_LEO2H CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.976 -1.180 0.208 8 HIS_LEO2H CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.255 0.579 -0.041 9 HIS_LEO2H NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.239 -0.692 0.414 10 HIS_LEO2H OXT OXT O 0 1 N Y N 34.382 41.455 -7.879 3.050 -1.359 0.039 11 HIS_LEO2H H H H 0 1 N N N 33.485 42.227 -3.721 1.079 2.095 0.077 12 HIS_LEO2H HA HA H 0 1 N N N 34.155 40.908 -5.439 0.822 -0.594 1.258 13 HIS_LEO2H HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.372 0.454 -1.572 14 HIS_LEO2H HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.410 -1.269 -1.127 15 HIS_LEO2H HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.815 1.724 -0.893 16 HIS_LEO2H HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.620 -2.169 0.455 17 HIS_LEO2H HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -4.107 1.242 -0.026 18 HIS_LEO2H HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -3.983 -1.171 0.810 19 HIS_LEO2H HXT HXT H 0 1 N Y N 34.553 41.905 -8.698 3.982 -1.433 -0.209 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LEO2H N CA SING N N 1 HIS_LEO2H N H SING N N 2 HIS_LEO2H CA C SING N N 3 HIS_LEO2H CA CB SING N N 4 HIS_LEO2H CA HA SING N N 5 HIS_LEO2H C O DOUB N N 6 HIS_LEO2H C OXT SING N N 7 HIS_LEO2H CB CG SING N N 8 HIS_LEO2H CB HB2 SING N N 9 HIS_LEO2H CB HB3 SING N N 10 HIS_LEO2H CG ND1 SING Y N 11 HIS_LEO2H CG CD2 DOUB Y N 12 HIS_LEO2H ND1 CE1 DOUB Y N 13 HIS_LEO2H ND1 HD1 SING N N 14 HIS_LEO2H CD2 NE2 SING Y N 15 HIS_LEO2H CD2 HD2 SING N N 16 HIS_LEO2H CE1 NE2 SING Y N 17 HIS_LEO2H CE1 HE1 SING N N 18 HIS_LEO2H NE2 HE2 SING N N 19 HIS_LEO2H OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])Cc1cnc[nH+]1 HIS_LEO2H InChI InChI 1.01 InChI=1/C6H8N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5,7H,1H2,(H,8,9)(H,10,11)/q-1/p+1/t5-/m0/s1 HIS_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]c[nH+]1)C(O)=O HIS_LEO2H SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]c[nH+]1)C(O)=O HIS_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)C[C@@H](C(=O)O)[NH-] HIS_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-2-(1H-imidazol-3-ium-4-yl)ethyl]azanide HIS_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-(1H-imidazol-3-ium-4-yl)-1-oxo-propan-2-yl]azanide # # data_HIS_LEO2H_DHD1 # _chem_comp.id HIS_LEO2H_DHD1 _chem_comp.name "L-HISTIDINE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED ND1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H8 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 154.147 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LEO2H_DHD1 N N N -1 1 N N N 33.472 42.685 -4.610 0.842 1.333 1.031 1 HIS_LEO2H_DHD1 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.062 0.013 0.424 2 HIS_LEO2H_DHD1 C C C 0 1 N N N 33.773 42.279 -7.040 2.507 -0.117 0.016 3 HIS_LEO2H_DHD1 O O O 0 1 N N N 33.497 43.444 -7.337 3.184 0.872 -0.133 4 HIS_LEO2H_DHD1 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.169 -0.137 -0.809 5 HIS_LEO2H_DHD1 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.277 -0.129 -0.385 6 HIS_LEO2H_DHD1 ND1 ND1 N 0 1 Y N N 32.539 38.710 -6.414 -1.837 -0.943 0.522 7 HIS_LEO2H_DHD1 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -2.233 0.700 -0.846 8 HIS_LEO2H_DHD1 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.104 -0.654 0.637 9 HIS_LEO2H_DHD1 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.393 0.366 -0.200 10 HIS_LEO2H_DHD1 OXT OXT O 0 1 N Y N 34.382 41.455 -7.879 3.042 -1.332 -0.182 11 HIS_LEO2H_DHD1 H H H 0 1 N N N 33.485 42.227 -3.721 1.062 2.071 0.380 12 HIS_LEO2H_DHD1 HA HA H 0 1 N N N 34.155 40.908 -5.439 0.817 -0.765 1.147 13 HIS_LEO2H_DHD1 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.351 0.692 -1.493 14 HIS_LEO2H_DHD1 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.396 -1.078 -1.310 15 HIS_LEO2H_DHD1 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -2.109 1.478 -1.584 16 HIS_LEO2H_DHD1 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.806 -1.147 1.294 17 HIS_LEO2H_DHD1 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -4.259 0.785 -0.319 18 HIS_LEO2H_DHD1 HXT HXT H 0 1 N Y N 34.553 41.905 -8.698 3.972 -1.365 -0.443 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LEO2H_DHD1 N CA SING N N 1 HIS_LEO2H_DHD1 N H SING N N 2 HIS_LEO2H_DHD1 CA C SING N N 3 HIS_LEO2H_DHD1 CA CB SING N N 4 HIS_LEO2H_DHD1 CA HA SING N N 5 HIS_LEO2H_DHD1 C O DOUB N N 6 HIS_LEO2H_DHD1 C OXT SING N N 7 HIS_LEO2H_DHD1 CB CG SING N N 8 HIS_LEO2H_DHD1 CB HB2 SING N N 9 HIS_LEO2H_DHD1 CB HB3 SING N N 10 HIS_LEO2H_DHD1 CG ND1 SING Y N 11 HIS_LEO2H_DHD1 CG CD2 DOUB Y N 12 HIS_LEO2H_DHD1 ND1 CE1 DOUB Y N 13 HIS_LEO2H_DHD1 CD2 NE2 SING Y N 14 HIS_LEO2H_DHD1 CD2 HD2 SING N N 15 HIS_LEO2H_DHD1 CE1 NE2 SING Y N 16 HIS_LEO2H_DHD1 CE1 HE1 SING N N 17 HIS_LEO2H_DHD1 NE2 HE2 SING N N 18 HIS_LEO2H_DHD1 OXT HXT SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LEO2H_DHD1 SMILES ACDLabs 10.04 O=C(O)C([NH-])Cc1ncnc1 HIS_LEO2H_DHD1 InChI InChI 1.01 InChI=1/C6H8N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5,7H,1H2,(H,8,9)(H,10,11)/q-1/t5-/m0/s1 HIS_LEO2H_DHD1 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]cn1)C(O)=O HIS_LEO2H_DHD1 SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]cn1)C(O)=O HIS_LEO2H_DHD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)C[C@@H](C(=O)O)[NH-] HIS_LEO2H_DHD1 SMILES "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LEO2H_DHD1 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]azanide HIS_LEO2H_DHD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-(1H-imidazol-4-yl)-1-oxo-propan-2-yl]azanide # # data_HIS_LEO2H_DHE2 # _chem_comp.id HIS_LEO2H_DHE2 _chem_comp.name "L-HISTIDINE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H8 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 154.147 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LEO2H_DHE2 N N N -1 1 N N N 33.472 42.685 -4.610 0.830 1.472 0.813 1 HIS_LEO2H_DHE2 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.054 0.072 0.427 2 HIS_LEO2H_DHE2 C C C 0 1 N N N 33.773 42.279 -7.040 2.500 -0.119 0.049 3 HIS_LEO2H_DHE2 O O O 0 1 N N N 33.497 43.444 -7.337 3.177 0.835 -0.255 4 HIS_LEO2H_DHE2 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.164 -0.276 -0.769 5 HIS_LEO2H_DHE2 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.283 -0.203 -0.356 6 HIS_LEO2H_DHE2 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -2.122 0.868 -0.507 7 HIS_LEO2H_DHE2 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -2.001 -1.181 0.228 8 HIS_LEO2H_DHE2 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.323 0.508 -0.005 9 HIS_LEO2H_DHE2 NE2 NE2 N -1 1 Y N N 31.439 38.453 -8.237 -3.243 -0.719 0.432 10 HIS_LEO2H_DHE2 OXT OXT O 0 1 N Y N 34.382 41.455 -7.879 3.037 -1.350 0.050 11 HIS_LEO2H_DHE2 H H H 0 1 N N N 33.485 42.227 -3.721 1.051 2.096 0.053 12 HIS_LEO2H_DHE2 HA HA H 0 1 N N N 34.155 40.908 -5.439 0.808 -0.580 1.265 13 HIS_LEO2H_DHE2 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.348 0.433 -1.576 14 HIS_LEO2H_DHE2 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.394 -1.285 -1.111 15 HIS_LEO2H_DHE2 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.896 1.725 -0.900 16 HIS_LEO2H_DHE2 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.641 -2.166 0.486 17 HIS_LEO2H_DHE2 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -4.204 1.132 0.027 18 HIS_LEO2H_DHE2 HXT HXT H 0 1 N Y N 34.553 41.905 -8.698 3.968 -1.422 -0.199 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LEO2H_DHE2 N CA SING N N 1 HIS_LEO2H_DHE2 N H SING N N 2 HIS_LEO2H_DHE2 CA C SING N N 3 HIS_LEO2H_DHE2 CA CB SING N N 4 HIS_LEO2H_DHE2 CA HA SING N N 5 HIS_LEO2H_DHE2 C O DOUB N N 6 HIS_LEO2H_DHE2 C OXT SING N N 7 HIS_LEO2H_DHE2 CB CG SING N N 8 HIS_LEO2H_DHE2 CB HB2 SING N N 9 HIS_LEO2H_DHE2 CB HB3 SING N N 10 HIS_LEO2H_DHE2 CG ND1 SING Y N 11 HIS_LEO2H_DHE2 CG CD2 DOUB Y N 12 HIS_LEO2H_DHE2 ND1 CE1 DOUB Y N 13 HIS_LEO2H_DHE2 ND1 HD1 SING N N 14 HIS_LEO2H_DHE2 CD2 NE2 SING Y N 15 HIS_LEO2H_DHE2 CD2 HD2 SING N N 16 HIS_LEO2H_DHE2 CE1 NE2 SING Y N 17 HIS_LEO2H_DHE2 CE1 HE1 SING N N 18 HIS_LEO2H_DHE2 OXT HXT SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LEO2H_DHE2 SMILES ACDLabs 10.04 O=C(O)C([NH-])Cc1[nH+]c[n-]c1 HIS_LEO2H_DHE2 InChI InChI 1.01 InChI=1/C6H8N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5,7H,1H2,(H2,8,9,10,11)/q-1/t5-/m0/s1 HIS_LEO2H_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[n-]c[nH+]1)C(O)=O HIS_LEO2H_DHE2 SMILES CACTVS 3.341 [NH-][CH](Cc1c[n-]c[nH+]1)C(O)=O HIS_LEO2H_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)C[C@@H](C(=O)O)[NH-] HIS_LEO2H_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LEO2H_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 4-[(2S)-2-azanidyl-2-carboxyethyl]imidazol-3-ium-1-ide HIS_LEO2H_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-imidazol-3-ium-1-id-4-yl-1-oxo-propan-2-yl]azanide # # data_HIS_LFOH # _chem_comp.id HIS_LFOH _chem_comp.name "L-HISTIDINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H10 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 156.162 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LFOH N N N 0 1 N N N 33.472 42.685 -4.610 0.853 1.467 0.796 1 HIS_LFOH CA CA C 0 1 N N S 33.414 41.686 -5.673 1.073 0.064 0.420 2 HIS_LFOH C C C 0 1 N N N 33.773 42.279 -7.040 2.519 -0.135 0.047 3 HIS_LFOH O O O 0 1 N N N 33.497 43.444 -7.337 3.200 0.814 -0.262 4 HIS_LFOH CB CB C 0 1 N N N 32.005 41.080 -5.734 0.185 -0.288 -0.775 5 HIS_LFOH CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.263 -0.207 -0.366 6 HIS_LFOH ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -2.070 0.852 -0.530 7 HIS_LFOH CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.976 -1.187 0.222 8 HIS_LFOH CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.254 0.567 -0.060 9 HIS_LFOH NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.238 -0.696 0.419 10 HIS_LFOH OXT OXT O 0 1 N Y N 34.382 41.455 -7.879 3.051 -1.368 0.058 11 HIS_LFOH HA HA H 0 1 N N N 34.155 40.908 -5.439 0.822 -0.581 1.262 12 HIS_LFOH HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.373 0.414 -1.587 13 HIS_LFOH HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.412 -1.301 -1.110 14 HIS_LFOH HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.814 1.696 -0.933 15 HIS_LFOH HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.619 -2.171 0.488 16 HIS_LFOH HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -4.106 1.230 -0.057 17 HIS_LFOH HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -3.983 -1.167 0.823 18 HIS_LFOH HXT HXT H 0 1 N Y N 34.553 41.905 -8.698 3.983 -1.446 -0.189 19 HIS_LFOH H1 H1 H 0 1 N N N 33.485 42.227 -3.721 1.079 2.086 0.031 20 HIS_LFOH H2 H2 H 0 1 N N N 34.301 43.234 -4.714 -0.094 1.613 1.112 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LFOH N CA SING N N 1 HIS_LFOH CA C SING N N 2 HIS_LFOH CA CB SING N N 3 HIS_LFOH CA HA SING N N 4 HIS_LFOH C O DOUB N N 5 HIS_LFOH C OXT SING N N 6 HIS_LFOH CB CG SING N N 7 HIS_LFOH CB HB2 SING N N 8 HIS_LFOH CB HB3 SING N N 9 HIS_LFOH CG ND1 SING Y N 10 HIS_LFOH CG CD2 DOUB Y N 11 HIS_LFOH ND1 CE1 DOUB Y N 12 HIS_LFOH ND1 HD1 SING N N 13 HIS_LFOH CD2 NE2 SING Y N 14 HIS_LFOH CD2 HD2 SING N N 15 HIS_LFOH CE1 NE2 SING Y N 16 HIS_LFOH CE1 HE1 SING N N 17 HIS_LFOH NE2 HE2 SING N N 18 HIS_LFOH OXT HXT SING N N 19 HIS_LFOH H1 N SING N N 20 HIS_LFOH H2 N SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)Cc1cnc[nH+]1 HIS_LFOH InChI InChI 1.01 InChI=1/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/p+1/t5-/m0/s1 HIS_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1c[nH]c[nH+]1)C(O)=O HIS_LFOH SMILES CACTVS 3.341 N[CH](Cc1c[nH]c[nH+]1)C(O)=O HIS_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)C[C@@H](C(=O)O)N HIS_LFOH SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 3-(1H-imidazol-3-ium-4-yl)-L-alanine HIS_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(1H-imidazol-3-ium-4-yl)propanoic acid" # # data_HIS_LFOH_DHD1 # _chem_comp.id HIS_LFOH_DHD1 _chem_comp.name "L-HISTIDINE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED ND1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H9 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 155.155 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LFOH_DHD1 N N N 0 1 N N N 33.472 42.685 -4.610 -0.840 1.377 -0.939 1 HIS_LFOH_DHD1 CA CA C 0 1 N N S 33.414 41.686 -5.673 -1.055 0.024 -0.407 2 HIS_LFOH_DHD1 C C C 0 1 N N N 33.773 42.279 -7.040 -2.498 -0.133 -0.003 3 HIS_LFOH_DHD1 O O O 0 1 N N N 33.497 43.444 -7.337 -3.177 0.845 0.204 4 HIS_LFOH_DHD1 CB CB C 0 1 N N N 32.005 41.080 -5.734 -0.157 -0.193 0.812 5 HIS_LFOH_DHD1 CG CG C 0 1 Y N N 31.888 39.902 -6.651 1.288 -0.158 0.385 6 HIS_LFOH_DHD1 ND1 ND1 N 0 1 Y N N 32.539 38.710 -6.414 1.847 -0.917 -0.569 7 HIS_LFOH_DHD1 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 2.243 0.646 0.890 8 HIS_LFOH_DHD1 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 3.113 -0.618 -0.671 9 HIS_LFOH_DHD1 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 3.401 0.353 0.222 10 HIS_LFOH_DHD1 OXT OXT O 0 1 N Y N 34.382 41.455 -7.879 -3.029 -1.359 0.127 11 HIS_LFOH_DHD1 HA HA H 0 1 N N N 34.155 40.908 -5.439 -0.810 -0.710 -1.175 12 HIS_LFOH_DHD1 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 -0.339 0.595 1.543 13 HIS_LFOH_DHD1 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 -0.380 -1.162 1.259 14 HIS_LFOH_DHD1 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 2.119 1.381 1.671 15 HIS_LFOH_DHD1 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 3.813 -1.070 -1.358 16 HIS_LFOH_DHD1 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 4.267 0.768 0.362 17 HIS_LFOH_DHD1 HXT HXT H 0 1 N Y N 34.553 41.905 -8.698 -3.958 -1.409 0.389 18 HIS_LFOH_DHD1 H1 H1 H 0 1 N N N 33.485 42.227 -3.721 -1.374 1.523 -1.783 19 HIS_LFOH_DHD1 H2 H2 H 0 1 N N N 34.301 43.234 -4.714 -1.060 2.077 -0.246 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LFOH_DHD1 N CA SING N N 1 HIS_LFOH_DHD1 CA C SING N N 2 HIS_LFOH_DHD1 CA CB SING N N 3 HIS_LFOH_DHD1 CA HA SING N N 4 HIS_LFOH_DHD1 C O DOUB N N 5 HIS_LFOH_DHD1 C OXT SING N N 6 HIS_LFOH_DHD1 CB CG SING N N 7 HIS_LFOH_DHD1 CB HB2 SING N N 8 HIS_LFOH_DHD1 CB HB3 SING N N 9 HIS_LFOH_DHD1 CG ND1 SING Y N 10 HIS_LFOH_DHD1 CG CD2 DOUB Y N 11 HIS_LFOH_DHD1 ND1 CE1 DOUB Y N 12 HIS_LFOH_DHD1 CD2 NE2 SING Y N 13 HIS_LFOH_DHD1 CD2 HD2 SING N N 14 HIS_LFOH_DHD1 CE1 NE2 SING Y N 15 HIS_LFOH_DHD1 CE1 HE1 SING N N 16 HIS_LFOH_DHD1 NE2 HE2 SING N N 17 HIS_LFOH_DHD1 OXT HXT SING N N 18 HIS_LFOH_DHD1 H1 N SING N N 19 HIS_LFOH_DHD1 H2 N SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LFOH_DHD1 SMILES ACDLabs 10.04 O=C(O)C(N)Cc1ncnc1 HIS_LFOH_DHD1 InChI InChI 1.01 InChI=1/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/t5-/m0/s1 HIS_LFOH_DHD1 SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1c[nH]cn1)C(O)=O HIS_LFOH_DHD1 SMILES CACTVS 3.341 N[CH](Cc1c[nH]cn1)C(O)=O HIS_LFOH_DHD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)C[C@@H](C(=O)O)N HIS_LFOH_DHD1 SMILES "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LFOH_DHD1 "SYSTEMATIC NAME" ACDLabs 10.04 L-histidine HIS_LFOH_DHD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(1H-imidazol-4-yl)propanoic acid" # # data_HIS_LFOH_DHE2 # _chem_comp.id HIS_LFOH_DHE2 _chem_comp.name "L-HISTIDINE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED NE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H9 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 155.155 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LFOH_DHE2 N N N 0 1 N N N 33.472 42.685 -4.610 -0.828 1.481 -0.756 1 HIS_LFOH_DHE2 CA CA C 0 1 N N S 33.414 41.686 -5.673 -1.046 0.070 -0.411 2 HIS_LFOH_DHE2 C C C 0 1 N N N 33.773 42.279 -7.040 -2.491 -0.137 -0.036 3 HIS_LFOH_DHE2 O O O 0 1 N N N 33.497 43.444 -7.337 -3.170 0.805 0.299 4 HIS_LFOH_DHE2 CB CB C 0 1 N N N 32.005 41.080 -5.734 -0.153 -0.311 0.771 5 HIS_LFOH_DHE2 CG CG C 0 1 Y N N 31.888 39.902 -6.651 1.293 -0.221 0.356 6 HIS_LFOH_DHE2 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 2.129 0.848 0.537 7 HIS_LFOH_DHE2 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 2.013 -1.179 -0.258 8 HIS_LFOH_DHE2 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 3.330 0.508 0.022 9 HIS_LFOH_DHE2 NE2 NE2 N -1 1 Y N N 31.439 38.453 -8.237 3.253 -0.706 -0.452 10 HIS_LFOH_DHE2 OXT OXT O 0 1 N Y N 34.382 41.455 -7.879 -3.024 -1.369 -0.073 11 HIS_LFOH_DHE2 HA HA H 0 1 N N N 34.155 40.908 -5.439 -0.801 -0.556 -1.269 12 HIS_LFOH_DHE2 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 -0.336 0.373 1.600 13 HIS_LFOH_DHE2 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 -0.378 -1.330 1.083 14 HIS_LFOH_DHE2 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 1.902 1.692 0.957 15 HIS_LFOH_DHE2 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 1.655 -2.157 -0.545 16 HIS_LFOH_DHE2 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 4.209 1.135 0.007 17 HIS_LFOH_DHE2 HXT HXT H 0 1 N Y N 34.553 41.905 -8.698 -3.954 -1.452 0.177 18 HIS_LFOH_DHE2 H1 H1 H 0 1 N N N 33.485 42.227 -3.721 -1.359 1.740 -1.574 19 HIS_LFOH_DHE2 H2 H2 H 0 1 N N N 34.301 43.234 -4.714 -1.049 2.082 0.024 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LFOH_DHE2 N CA SING N N 1 HIS_LFOH_DHE2 CA C SING N N 2 HIS_LFOH_DHE2 CA CB SING N N 3 HIS_LFOH_DHE2 CA HA SING N N 4 HIS_LFOH_DHE2 C O DOUB N N 5 HIS_LFOH_DHE2 C OXT SING N N 6 HIS_LFOH_DHE2 CB CG SING N N 7 HIS_LFOH_DHE2 CB HB2 SING N N 8 HIS_LFOH_DHE2 CB HB3 SING N N 9 HIS_LFOH_DHE2 CG ND1 SING Y N 10 HIS_LFOH_DHE2 CG CD2 DOUB Y N 11 HIS_LFOH_DHE2 ND1 CE1 DOUB Y N 12 HIS_LFOH_DHE2 ND1 HD1 SING N N 13 HIS_LFOH_DHE2 CD2 NE2 SING Y N 14 HIS_LFOH_DHE2 CD2 HD2 SING N N 15 HIS_LFOH_DHE2 CE1 NE2 SING Y N 16 HIS_LFOH_DHE2 CE1 HE1 SING N N 17 HIS_LFOH_DHE2 OXT HXT SING N N 18 HIS_LFOH_DHE2 H1 N SING N N 19 HIS_LFOH_DHE2 H2 N SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LFOH_DHE2 SMILES ACDLabs 10.04 O=C(O)C(N)Cc1[nH+]c[n-]c1 HIS_LFOH_DHE2 InChI InChI 1.01 InChI=1/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H2,8,9,10,11)/t5-/m0/s1 HIS_LFOH_DHE2 SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1c[n-]c[nH+]1)C(O)=O HIS_LFOH_DHE2 SMILES CACTVS 3.341 N[CH](Cc1c[n-]c[nH+]1)C(O)=O HIS_LFOH_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)C[C@@H](C(=O)O)N HIS_LFOH_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LFOH_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 3-imidazol-3-ium-1-id-4-yl-L-alanine HIS_LFOH_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-imidazol-3-ium-1-id-4-yl-propanoic acid" # # data_HIS_LFZW # _chem_comp.id HIS_LFZW _chem_comp.name "L-HISTIDINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H10 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 156.162 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LFZW N N N 1 1 N N N 33.472 42.685 -4.610 -0.915 1.515 -0.553 1 HIS_LFZW CA CA C 0 1 N N S 33.414 41.686 -5.673 -1.097 0.066 -0.397 2 HIS_LFZW C C C 0 1 N N N 33.773 42.279 -7.040 -2.535 -0.226 -0.056 3 HIS_LFZW O O O 0 1 N N N 33.497 43.444 -7.337 -3.335 0.689 0.047 4 HIS_LFZW CB CB C 0 1 N N N 32.005 41.080 -5.734 -0.193 -0.443 0.728 5 HIS_LFZW CG CG C 0 1 Y N N 31.888 39.902 -6.651 1.250 -0.263 0.333 6 HIS_LFZW ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 2.031 0.779 0.655 7 HIS_LFZW CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 1.984 -1.122 -0.401 8 HIS_LFZW CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 3.219 0.600 0.145 9 HIS_LFZW NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 3.232 -0.574 -0.522 10 HIS_LFZW OXT OXT O -1 1 N Y N 34.382 41.455 -7.879 -2.900 -1.377 0.116 11 HIS_LFZW HA HA H 0 1 N N N 34.155 40.908 -5.439 -0.835 -0.435 -1.329 12 HIS_LFZW HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 -0.394 0.121 1.638 13 HIS_LFZW HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 -0.392 -1.500 0.903 14 HIS_LFZW HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 1.757 1.544 1.184 15 HIS_LFZW HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 1.651 -2.062 -0.814 16 HIS_LFZW HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 4.055 1.278 0.243 17 HIS_LFZW HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 3.986 -0.958 -0.996 18 HIS_LFZW H1 H1 H 0 1 N N N 33.485 42.227 -3.721 0.049 1.711 -0.781 19 HIS_LFZW H2 H2 H 0 1 N N N 34.301 43.234 -4.714 -1.511 1.851 -1.295 20 HIS_LFZW H3 H3 H 0 1 N N N 32.669 43.279 -4.667 -1.157 1.980 0.309 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LFZW N CA SING N N 1 HIS_LFZW CA C SING N N 2 HIS_LFZW CA CB SING N N 3 HIS_LFZW CA HA SING N N 4 HIS_LFZW C O DOUB N N 5 HIS_LFZW C OXT SING N N 6 HIS_LFZW CB CG SING N N 7 HIS_LFZW CB HB2 SING N N 8 HIS_LFZW CB HB3 SING N N 9 HIS_LFZW CG ND1 SING Y N 10 HIS_LFZW CG CD2 DOUB Y N 11 HIS_LFZW ND1 CE1 DOUB Y N 12 HIS_LFZW ND1 HD1 SING N N 13 HIS_LFZW CD2 NE2 SING Y N 14 HIS_LFZW CD2 HD2 SING N N 15 HIS_LFZW CE1 NE2 SING Y N 16 HIS_LFZW CE1 HE1 SING N N 17 HIS_LFZW NE2 HE2 SING N N 18 HIS_LFZW H1 N SING N N 19 HIS_LFZW H2 N SING N N 20 HIS_LFZW H3 N SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LFZW SMILES ACDLabs 10.04 O=C([O-])C(Cc1cnc[nH+]1)[NH3+] HIS_LFZW InChI InChI 1.01 InChI=1/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/p+1/t5-/m0/s1 HIS_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[nH]c[nH+]1)C([O-])=O HIS_LFZW SMILES CACTVS 3.341 [NH3+][CH](Cc1c[nH]c[nH+]1)C([O-])=O HIS_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)C[C@@H](C(=O)[O-])[NH3+] HIS_LFZW SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(1H-imidazol-3-ium-4-yl)propanoate HIS_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-(1H-imidazol-3-ium-4-yl)propanoate # # data_HIS_LFZW_DHD1 # _chem_comp.id HIS_LFZW_DHD1 _chem_comp.name "L-HISTIDINE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED ND1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H9 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 155.155 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LFZW_DHD1 N N N 1 1 N N N 33.472 42.685 -4.610 0.899 1.454 0.711 1 HIS_LFZW_DHD1 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.086 0.033 0.392 2 HIS_LFZW_DHD1 C C C 0 1 N N N 33.773 42.279 -7.040 2.525 -0.212 0.015 3 HIS_LFZW_DHD1 O O O 0 1 N N N 33.497 43.444 -7.337 2.937 -1.353 -0.109 4 HIS_LFZW_DHD1 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.180 -0.350 -0.779 5 HIS_LFZW_DHD1 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.262 -0.222 -0.361 6 HIS_LFZW_DHD1 ND1 ND1 N 0 1 Y N N 32.539 38.710 -6.414 -1.832 -0.817 0.698 7 HIS_LFZW_DHD1 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -2.204 0.513 -0.982 8 HIS_LFZW_DHD1 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -3.092 -0.481 0.753 9 HIS_LFZW_DHD1 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.365 0.348 -0.277 10 HIS_LFZW_DHD1 OXT OXT O -1 1 N Y N 34.382 41.455 -7.879 3.277 0.731 -0.165 11 HIS_LFZW_DHD1 HA HA H 0 1 N N N 34.155 40.908 -5.439 0.831 -0.572 1.262 12 HIS_LFZW_DHD1 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.375 0.313 -1.622 13 HIS_LFZW_DHD1 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.383 -1.380 -1.074 14 HIS_LFZW_DHD1 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -2.069 1.118 -1.867 15 HIS_LFZW_DHD1 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.798 -0.810 1.501 16 HIS_LFZW_DHD1 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -4.223 0.753 -0.477 17 HIS_LFZW_DHD1 H1 H1 H 0 1 N N N 33.485 42.227 -3.721 1.136 2.014 -0.094 18 HIS_LFZW_DHD1 H2 H2 H 0 1 N N N 34.301 43.234 -4.714 -0.064 1.618 0.964 19 HIS_LFZW_DHD1 H3 H3 H 0 1 N N N 32.669 43.279 -4.667 1.497 1.707 1.484 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LFZW_DHD1 N CA SING N N 1 HIS_LFZW_DHD1 CA C SING N N 2 HIS_LFZW_DHD1 CA CB SING N N 3 HIS_LFZW_DHD1 CA HA SING N N 4 HIS_LFZW_DHD1 C O DOUB N N 5 HIS_LFZW_DHD1 C OXT SING N N 6 HIS_LFZW_DHD1 CB CG SING N N 7 HIS_LFZW_DHD1 CB HB2 SING N N 8 HIS_LFZW_DHD1 CB HB3 SING N N 9 HIS_LFZW_DHD1 CG ND1 SING Y N 10 HIS_LFZW_DHD1 CG CD2 DOUB Y N 11 HIS_LFZW_DHD1 ND1 CE1 DOUB Y N 12 HIS_LFZW_DHD1 CD2 NE2 SING Y N 13 HIS_LFZW_DHD1 CD2 HD2 SING N N 14 HIS_LFZW_DHD1 CE1 NE2 SING Y N 15 HIS_LFZW_DHD1 CE1 HE1 SING N N 16 HIS_LFZW_DHD1 NE2 HE2 SING N N 17 HIS_LFZW_DHD1 H1 N SING N N 18 HIS_LFZW_DHD1 H2 N SING N N 19 HIS_LFZW_DHD1 H3 N SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LFZW_DHD1 SMILES ACDLabs 10.04 O=C([O-])C(Cc1ncnc1)[NH3+] HIS_LFZW_DHD1 InChI InChI 1.01 InChI=1/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/t5-/m0/s1 HIS_LFZW_DHD1 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[nH]cn1)C([O-])=O HIS_LFZW_DHD1 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[nH]cn1)C([O-])=O HIS_LFZW_DHD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)C[C@@H](C(=O)[O-])[NH3+] HIS_LFZW_DHD1 SMILES "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LFZW_DHD1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(1H-imidazol-4-yl)propanoate HIS_LFZW_DHD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-(1H-imidazol-4-yl)propanoate # # data_HIS_LFZW_DHE2 # _chem_comp.id HIS_LFZW_DHE2 _chem_comp.name "L-HISTIDINE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED NE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H9 N3 O2" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 155.155 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LFZW_DHE2 N N N 1 1 N N N 33.472 42.685 -4.610 -0.888 1.486 -0.632 1 HIS_LFZW_DHE2 CA CA C 0 1 N N S 33.414 41.686 -5.673 -1.078 0.048 -0.401 2 HIS_LFZW_DHE2 C C C 0 1 N N N 33.773 42.279 -7.040 -2.518 -0.218 -0.044 3 HIS_LFZW_DHE2 O O O 0 1 N N N 33.497 43.444 -7.337 -2.931 -1.363 0.010 4 HIS_LFZW_DHE2 CB CB C 0 1 N N N 32.005 41.080 -5.734 -0.175 -0.407 0.748 5 HIS_LFZW_DHE2 CG CG C 0 1 Y N N 31.888 39.902 -6.651 1.268 -0.256 0.342 6 HIS_LFZW_DHE2 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 2.083 0.812 0.608 7 HIS_LFZW_DHE2 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 2.007 -1.147 -0.346 8 HIS_LFZW_DHE2 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 3.289 0.538 0.068 9 HIS_LFZW_DHE2 NE2 NE2 N -1 1 Y N N 31.439 38.453 -8.237 3.237 -0.636 -0.501 10 HIS_LFZW_DHE2 OXT OXT O -1 1 N Y N 34.382 41.455 -7.879 -3.269 0.713 0.192 11 HIS_LFZW_DHE2 HA HA H 0 1 N N N 34.155 40.908 -5.439 -0.821 -0.502 -1.306 12 HIS_LFZW_DHE2 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 -0.371 0.204 1.628 13 HIS_LFZW_DHE2 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 -0.380 -1.453 0.978 14 HIS_LFZW_DHE2 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 1.838 1.615 1.094 15 HIS_LFZW_DHE2 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 1.668 -2.106 -0.710 16 HIS_LFZW_DHE2 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 4.156 1.182 0.103 17 HIS_LFZW_DHE2 H1 H1 H 0 1 N N N 33.485 42.227 -3.721 0.076 1.664 -0.871 18 HIS_LFZW_DHE2 H2 H2 H 0 1 N N N 34.301 43.234 -4.714 -1.484 1.787 -1.389 19 HIS_LFZW_DHE2 H3 H3 H 0 1 N N N 32.669 43.279 -4.667 -1.127 1.996 0.206 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LFZW_DHE2 N CA SING N N 1 HIS_LFZW_DHE2 CA C SING N N 2 HIS_LFZW_DHE2 CA CB SING N N 3 HIS_LFZW_DHE2 CA HA SING N N 4 HIS_LFZW_DHE2 C O DOUB N N 5 HIS_LFZW_DHE2 C OXT SING N N 6 HIS_LFZW_DHE2 CB CG SING N N 7 HIS_LFZW_DHE2 CB HB2 SING N N 8 HIS_LFZW_DHE2 CB HB3 SING N N 9 HIS_LFZW_DHE2 CG ND1 SING Y N 10 HIS_LFZW_DHE2 CG CD2 DOUB Y N 11 HIS_LFZW_DHE2 ND1 CE1 DOUB Y N 12 HIS_LFZW_DHE2 ND1 HD1 SING N N 13 HIS_LFZW_DHE2 CD2 NE2 SING Y N 14 HIS_LFZW_DHE2 CD2 HD2 SING N N 15 HIS_LFZW_DHE2 CE1 NE2 SING Y N 16 HIS_LFZW_DHE2 CE1 HE1 SING N N 17 HIS_LFZW_DHE2 H1 N SING N N 18 HIS_LFZW_DHE2 H2 N SING N N 19 HIS_LFZW_DHE2 H3 N SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LFZW_DHE2 SMILES ACDLabs 10.04 O=C([O-])C(Cc1[nH+]c[n-]c1)[NH3+] HIS_LFZW_DHE2 InChI InChI 1.01 InChI=1/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H2,8,9,10,11)/t5-/m0/s1 HIS_LFZW_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[n-]c[nH+]1)C([O-])=O HIS_LFZW_DHE2 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[n-]c[nH+]1)C([O-])=O HIS_LFZW_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)C[C@@H](C(=O)[O-])[NH3+] HIS_LFZW_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LFZW_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-imidazol-3-ium-1-id-4-ylpropanoate HIS_LFZW_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-imidazol-3-ium-1-id-4-yl-propanoate # # data_HIS_LL # _chem_comp.id HIS_LL _chem_comp.name "L-HISTIDINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H8 N3 O" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 138.147 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LL N N N -1 1 N N N 33.472 42.685 -4.610 1.357 1.298 0.592 1 HIS_LL CA CA C 0 1 N N S 33.414 41.686 -5.673 1.452 -0.104 0.165 2 HIS_LL C C C -1 1 N N N 33.773 42.279 -7.040 2.841 -0.380 -0.350 3 HIS_LL O O O 0 1 N N N 33.497 43.444 -7.337 3.794 -0.231 0.377 4 HIS_LL CB CB C 0 1 N N N 32.005 41.080 -5.734 0.435 -0.368 -0.947 5 HIS_LL CG CG C 0 1 Y N N 31.888 39.902 -6.651 -0.961 -0.211 -0.400 6 HIS_LL ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -1.711 0.898 -0.461 7 HIS_LL CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.674 -1.163 0.231 8 HIS_LL CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -2.861 0.672 0.114 9 HIS_LL NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -2.879 -0.602 0.559 10 HIS_LL H H H 0 1 N N N 33.485 42.227 -3.721 1.548 1.924 -0.176 11 HIS_LL HA HA H 0 1 N N N 34.155 40.908 -5.439 1.242 -0.757 1.012 12 HIS_LL HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.589 0.345 -1.758 13 HIS_LL HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.565 -1.382 -1.326 14 HIS_LL HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.442 1.737 -0.867 15 HIS_LL HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.357 -2.174 0.439 16 HIS_LL HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.666 1.385 0.213 17 HIS_LL HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -3.611 -1.040 1.023 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LL N CA SING N N 1 HIS_LL N H SING N N 2 HIS_LL CA C SING N N 3 HIS_LL CA CB SING N N 4 HIS_LL CA HA SING N N 5 HIS_LL C O DOUB N N 6 HIS_LL CB CG SING N N 7 HIS_LL CB HB2 SING N N 8 HIS_LL CB HB3 SING N N 9 HIS_LL CG ND1 SING Y N 10 HIS_LL CG CD2 DOUB Y N 11 HIS_LL ND1 CE1 DOUB Y N 12 HIS_LL ND1 HD1 SING N N 13 HIS_LL CD2 NE2 SING Y N 14 HIS_LL CD2 HD2 SING N N 15 HIS_LL CE1 NE2 SING Y N 16 HIS_LL CE1 HE1 SING N N 17 HIS_LL NE2 HE2 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])Cc1cnc[nH+]1 HIS_LL InChI InChI 1.01 InChI=1/C6H7N3O/c7-5(3-10)1-6-2-8-4-9-6/h2,4-5,7H,1H2,(H,8,9)/q-2/p+1/t5-/m0/s1 HIS_LL SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]c[nH+]1)[C-]=O HIS_LL SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]c[nH+]1)[C-]=O HIS_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)C[C@@H]([C-]=O)[NH-] HIS_LL SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(1H-imidazol-3-ium-4-ylmethyl)-2-oxoethan-2-idyl]azanide HIS_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-(1H-imidazol-3-ium-4-yl)-3-oxo-propan-2-yl]azanide # # data_HIS_LL_DHD1 # _chem_comp.id HIS_LL_DHD1 _chem_comp.name "L-HISTIDINE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED ND1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H7 N3 O" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 137.139 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LL_DHD1 N N N -1 1 N N N 33.472 42.685 -4.610 1.342 0.528 1.335 1 HIS_LL_DHD1 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.443 -0.164 0.043 2 HIS_LL_DHD1 C C C -1 1 N N N 33.773 42.279 -7.040 2.830 0.019 -0.518 3 HIS_LL_DHD1 O O O 0 1 N N N 33.497 43.444 -7.337 3.788 -0.377 0.101 4 HIS_LL_DHD1 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.418 0.422 -0.930 5 HIS_LL_DHD1 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -0.974 0.131 -0.430 6 HIS_LL_DHD1 ND1 ND1 N 0 1 Y N N 32.539 38.710 -6.414 -1.466 -1.080 -0.129 7 HIS_LL_DHD1 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.938 1.042 -0.200 8 HIS_LL_DHD1 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -2.701 -0.954 0.273 9 HIS_LL_DHD1 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.035 0.354 0.244 10 HIS_LL_DHD1 H H H 0 1 N N N 33.485 42.227 -3.721 1.522 1.516 1.231 11 HIS_LL_DHD1 HA HA H 0 1 N N N 34.155 40.908 -5.439 1.245 -1.226 0.184 12 HIS_LL_DHD1 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.560 1.500 -1.003 13 HIS_LL_DHD1 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.552 -0.029 -1.913 14 HIS_LL_DHD1 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.861 2.110 -0.339 15 HIS_LL_DHD1 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.348 -1.763 0.581 16 HIS_LL_DHD1 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -3.892 0.735 0.493 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LL_DHD1 N CA SING N N 1 HIS_LL_DHD1 N H SING N N 2 HIS_LL_DHD1 CA C SING N N 3 HIS_LL_DHD1 CA CB SING N N 4 HIS_LL_DHD1 CA HA SING N N 5 HIS_LL_DHD1 C O DOUB N N 6 HIS_LL_DHD1 CB CG SING N N 7 HIS_LL_DHD1 CB HB2 SING N N 8 HIS_LL_DHD1 CB HB3 SING N N 9 HIS_LL_DHD1 CG ND1 SING Y N 10 HIS_LL_DHD1 CG CD2 DOUB Y N 11 HIS_LL_DHD1 ND1 CE1 DOUB Y N 12 HIS_LL_DHD1 CD2 NE2 SING Y N 13 HIS_LL_DHD1 CD2 HD2 SING N N 14 HIS_LL_DHD1 CE1 NE2 SING Y N 15 HIS_LL_DHD1 CE1 HE1 SING N N 16 HIS_LL_DHD1 NE2 HE2 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LL_DHD1 SMILES ACDLabs 10.04 O=[C-]C([NH-])Cc1ncnc1 HIS_LL_DHD1 InChI InChI 1.01 InChI=1/C6H7N3O/c7-5(3-10)1-6-2-8-4-9-6/h2,4-5,7H,1H2,(H,8,9)/q-2/t5-/m0/s1 HIS_LL_DHD1 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]cn1)[C-]=O HIS_LL_DHD1 SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]cn1)[C-]=O HIS_LL_DHD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)C[C@@H]([C-]=O)[NH-] HIS_LL_DHD1 SMILES "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LL_DHD1 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(1H-imidazol-4-ylmethyl)-2-oxoethan-2-idyl]azanide HIS_LL_DHD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-(1H-imidazol-4-yl)-3-oxo-propan-2-yl]azanide # # data_HIS_LL_DHE2 # _chem_comp.id HIS_LL_DHE2 _chem_comp.name "L-HISTIDINE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H7 N3 O" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 137.139 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LL_DHE2 N N N -1 1 N N N 33.472 42.685 -4.610 1.335 1.315 0.556 1 HIS_LL_DHE2 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.434 -0.098 0.166 2 HIS_LL_DHE2 C C C -1 1 N N N 33.773 42.279 -7.040 2.823 -0.382 -0.346 3 HIS_LL_DHE2 O O O 0 1 N N N 33.497 43.444 -7.337 3.778 -0.210 0.373 4 HIS_LL_DHE2 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.414 -0.395 -0.936 5 HIS_LL_DHE2 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -0.980 -0.230 -0.388 6 HIS_LL_DHE2 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -1.761 0.891 -0.470 7 HIS_LL_DHE2 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.698 -1.158 0.272 8 HIS_LL_DHE2 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -2.929 0.610 0.147 9 HIS_LL_DHE2 NE2 NE2 N -1 1 Y N N 31.439 38.453 -8.237 -2.884 -0.617 0.589 10 HIS_LL_DHE2 H H H 0 1 N N N 33.485 42.227 -3.721 1.521 1.921 -0.229 11 HIS_LL_DHE2 HA HA H 0 1 N N N 34.155 40.908 -5.439 1.229 -0.729 1.030 12 HIS_LL_DHE2 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.563 0.297 -1.765 13 HIS_LL_DHE2 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.547 -1.418 -1.288 14 HIS_LL_DHE2 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.521 1.730 -0.893 15 HIS_LL_DHE2 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.376 -2.162 0.505 16 HIS_LL_DHE2 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.762 1.288 0.256 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LL_DHE2 N CA SING N N 1 HIS_LL_DHE2 N H SING N N 2 HIS_LL_DHE2 CA C SING N N 3 HIS_LL_DHE2 CA CB SING N N 4 HIS_LL_DHE2 CA HA SING N N 5 HIS_LL_DHE2 C O DOUB N N 6 HIS_LL_DHE2 CB CG SING N N 7 HIS_LL_DHE2 CB HB2 SING N N 8 HIS_LL_DHE2 CB HB3 SING N N 9 HIS_LL_DHE2 CG ND1 SING Y N 10 HIS_LL_DHE2 CG CD2 DOUB Y N 11 HIS_LL_DHE2 ND1 CE1 DOUB Y N 12 HIS_LL_DHE2 ND1 HD1 SING N N 13 HIS_LL_DHE2 CD2 NE2 SING Y N 14 HIS_LL_DHE2 CD2 HD2 SING N N 15 HIS_LL_DHE2 CE1 NE2 SING Y N 16 HIS_LL_DHE2 CE1 HE1 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LL_DHE2 SMILES ACDLabs 10.04 O=[C-]C([NH-])Cc1[nH+]c[n-]c1 HIS_LL_DHE2 InChI InChI 1.01 InChI=1/C6H6N3O/c7-5(3-10)1-6-2-8-4-9-6/h2,4-5,7H,1H2/q-3/p+1/t5-/m0/s1 HIS_LL_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[n-]c[nH+]1)[C-]=O HIS_LL_DHE2 SMILES CACTVS 3.341 [NH-][CH](Cc1c[n-]c[nH+]1)[C-]=O HIS_LL_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)C[C@@H]([C-]=O)[NH-] HIS_LL_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LL_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 4-[(2S)-2-azanidyl-3-oxopropan-3-idyl]imidazol-3-ium-1-ide HIS_LL_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-imidazol-3-ium-1-id-4-yl-3-oxo-propan-2-yl]azanide # # data_HIS_LSN3 # _chem_comp.id HIS_LSN3 _chem_comp.name "L-HISTIDINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H10 N3 O" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 140.163 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LSN3 N N N 1 1 N N N 33.472 42.685 -4.610 -1.349 1.305 -0.482 1 HIS_LSN3 CA CA C 0 1 N N S 33.414 41.686 -5.673 -1.434 -0.123 -0.151 2 HIS_LSN3 C C C -1 1 N N N 33.773 42.279 -7.040 -2.819 -0.442 0.349 3 HIS_LSN3 O O O 0 1 N N N 33.497 43.444 -7.337 -3.777 -0.250 -0.361 4 HIS_LSN3 CB CB C 0 1 N N N 32.005 41.080 -5.734 -0.410 -0.457 0.936 5 HIS_LSN3 CG CG C 0 1 Y N N 31.888 39.902 -6.651 0.981 -0.255 0.395 6 HIS_LSN3 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 1.726 0.853 0.529 7 HIS_LSN3 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 1.698 -1.157 -0.303 8 HIS_LSN3 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 2.875 0.673 -0.064 9 HIS_LSN3 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 2.898 -0.568 -0.596 10 HIS_LSN3 HA HA H 0 1 N N N 34.155 40.908 -5.439 -1.224 -0.716 -1.041 11 HIS_LSN3 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 -0.565 0.198 1.794 12 HIS_LSN3 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 -0.533 -1.495 1.245 13 HIS_LSN3 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 1.454 1.660 0.992 14 HIS_LSN3 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 1.385 -2.153 -0.578 15 HIS_LSN3 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 3.675 1.397 -0.119 16 HIS_LSN3 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 3.630 -0.968 -1.092 17 HIS_LSN3 H1 H1 H 0 1 N N N 33.485 42.227 -3.721 -0.422 1.519 -0.816 18 HIS_LSN3 H2 H2 H 0 1 N N N 34.301 43.234 -4.714 -2.024 1.525 -1.199 19 HIS_LSN3 H3 H3 H 0 1 N N N 32.669 43.279 -4.667 -1.544 1.854 0.343 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LSN3 N CA SING N N 1 HIS_LSN3 CA C SING N N 2 HIS_LSN3 CA CB SING N N 3 HIS_LSN3 CA HA SING N N 4 HIS_LSN3 C O DOUB N N 5 HIS_LSN3 CB CG SING N N 6 HIS_LSN3 CB HB2 SING N N 7 HIS_LSN3 CB HB3 SING N N 8 HIS_LSN3 CG ND1 SING Y N 9 HIS_LSN3 CG CD2 DOUB Y N 10 HIS_LSN3 ND1 CE1 DOUB Y N 11 HIS_LSN3 ND1 HD1 SING N N 12 HIS_LSN3 CD2 NE2 SING Y N 13 HIS_LSN3 CD2 HD2 SING N N 14 HIS_LSN3 CE1 NE2 SING Y N 15 HIS_LSN3 CE1 HE1 SING N N 16 HIS_LSN3 NE2 HE2 SING N N 17 HIS_LSN3 H1 N SING N N 18 HIS_LSN3 H2 N SING N N 19 HIS_LSN3 H3 N SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LSN3 SMILES ACDLabs 10.04 O=[C-]C(Cc1cnc[nH+]1)[NH3+] HIS_LSN3 InChI InChI 1.01 InChI=1/C6H8N3O/c7-5(3-10)1-6-2-8-4-9-6/h2,4-5H,1,7H2,(H,8,9)/q-1/p+2/t5-/m0/s1 HIS_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[nH]c[nH+]1)[C-]=O HIS_LSN3 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[nH]c[nH+]1)[C-]=O HIS_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)C[C@@H]([C-]=O)[NH3+] HIS_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[nH]1)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(1H-imidazol-3-ium-4-yl)-1-oxopropan-1-ide HIS_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-(1H-imidazol-3-ium-4-yl)-3-oxo-propan-2-yl]azanium # # data_HIS_LSN3_DHD1 # _chem_comp.id HIS_LSN3_DHD1 _chem_comp.name "L-HISTIDINE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED ND1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H9 N3 O" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 139.155 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LSN3_DHD1 N N N 1 1 N N N 33.472 42.685 -4.610 1.334 0.665 1.233 1 HIS_LSN3_DHD1 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.425 -0.167 0.025 2 HIS_LSN3_DHD1 C C C -1 1 N N N 33.773 42.279 -7.040 2.808 -0.050 -0.562 3 HIS_LSN3_DHD1 O O O 0 1 N N N 33.497 43.444 -7.337 3.771 -0.376 0.090 4 HIS_LSN3_DHD1 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.394 0.308 -1.000 5 HIS_LSN3_DHD1 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -0.994 0.077 -0.461 6 HIS_LSN3_DHD1 ND1 ND1 N 0 1 Y N N 32.539 38.710 -6.414 -1.486 -1.092 -0.023 7 HIS_LSN3_DHD1 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.957 1.009 -0.327 8 HIS_LSN3_DHD1 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -2.718 -0.921 0.371 9 HIS_LSN3_DHD1 NE2 NE2 N 0 1 Y N N 31.439 38.453 -8.237 -3.051 0.376 0.198 10 HIS_LSN3_DHD1 HA HA H 0 1 N N N 34.155 40.908 -5.439 1.227 -1.207 0.285 11 HIS_LSN3_DHD1 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.536 1.371 -1.193 12 HIS_LSN3_DHD1 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.520 -0.250 -1.928 13 HIS_LSN3_DHD1 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.880 2.055 -0.585 14 HIS_LSN3_DHD1 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.363 -1.689 0.771 15 HIS_LSN3_DHD1 HE2 HE2 H 0 1 N N N 31.061 38.039 -9.065 -3.905 0.784 0.410 16 HIS_LSN3_DHD1 H1 H1 H 0 1 N N N 33.485 42.227 -3.721 1.517 1.628 0.992 17 HIS_LSN3_DHD1 H2 H2 H 0 1 N N N 34.301 43.234 -4.714 0.408 0.587 1.626 18 HIS_LSN3_DHD1 H3 H3 H 0 1 N N N 32.669 43.279 -4.667 2.014 0.352 1.909 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LSN3_DHD1 N CA SING N N 1 HIS_LSN3_DHD1 CA C SING N N 2 HIS_LSN3_DHD1 CA CB SING N N 3 HIS_LSN3_DHD1 CA HA SING N N 4 HIS_LSN3_DHD1 C O DOUB N N 5 HIS_LSN3_DHD1 CB CG SING N N 6 HIS_LSN3_DHD1 CB HB2 SING N N 7 HIS_LSN3_DHD1 CB HB3 SING N N 8 HIS_LSN3_DHD1 CG ND1 SING Y N 9 HIS_LSN3_DHD1 CG CD2 DOUB Y N 10 HIS_LSN3_DHD1 ND1 CE1 DOUB Y N 11 HIS_LSN3_DHD1 CD2 NE2 SING Y N 12 HIS_LSN3_DHD1 CD2 HD2 SING N N 13 HIS_LSN3_DHD1 CE1 NE2 SING Y N 14 HIS_LSN3_DHD1 CE1 HE1 SING N N 15 HIS_LSN3_DHD1 NE2 HE2 SING N N 16 HIS_LSN3_DHD1 H1 N SING N N 17 HIS_LSN3_DHD1 H2 N SING N N 18 HIS_LSN3_DHD1 H3 N SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LSN3_DHD1 SMILES ACDLabs 10.04 O=[C-]C(Cc1ncnc1)[NH3+] HIS_LSN3_DHD1 InChI InChI 1.01 InChI=1/C6H8N3O/c7-5(3-10)1-6-2-8-4-9-6/h2,4-5H,1,7H2,(H,8,9)/q-1/p+1/t5-/m0/s1 HIS_LSN3_DHD1 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[nH]cn1)[C-]=O HIS_LSN3_DHD1 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[nH]cn1)[C-]=O HIS_LSN3_DHD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)C[C@@H]([C-]=O)[NH3+] HIS_LSN3_DHD1 SMILES "OpenEye OEToolkits" 1.5.0 c1c(nc[nH]1)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LSN3_DHD1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(1H-imidazol-4-yl)-1-oxopropan-1-ide HIS_LSN3_DHD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-(1H-imidazol-4-yl)-3-oxo-propan-2-yl]azanium # # data_HIS_LSN3_DHE2 # _chem_comp.id HIS_LSN3_DHE2 _chem_comp.name "L-HISTIDINE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H9 N3 O" _chem_comp.mon_nstd_parent_comp_id HIS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 139.155 _chem_comp.one_letter_code H _chem_comp.three_letter_code HIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal HIS_LSN3_DHE2 N N N 1 1 N N N 33.472 42.685 -4.610 1.327 1.319 0.446 1 HIS_LSN3_DHE2 CA CA C 0 1 N N S 33.414 41.686 -5.673 1.416 -0.117 0.152 2 HIS_LSN3_DHE2 C C C -1 1 N N N 33.773 42.279 -7.040 2.801 -0.444 -0.344 3 HIS_LSN3_DHE2 O O O 0 1 N N N 33.497 43.444 -7.337 3.760 -0.230 0.358 4 HIS_LSN3_DHE2 CB CB C 0 1 N N N 32.005 41.080 -5.734 0.390 -0.483 -0.922 5 HIS_LSN3_DHE2 CG CG C 0 1 Y N N 31.888 39.902 -6.651 -1.000 -0.272 -0.382 6 HIS_LSN3_DHE2 ND1 ND1 N 1 1 Y N N 32.539 38.710 -6.414 -1.776 0.845 -0.537 7 HIS_LSN3_DHE2 CD2 CD2 C 0 1 Y N N 31.199 39.734 -7.804 -1.722 -1.149 0.343 8 HIS_LSN3_DHE2 CE1 CE1 C 0 1 Y N N 32.251 37.857 -7.382 -2.942 0.614 0.103 9 HIS_LSN3_DHE2 NE2 NE2 N -1 1 Y N N 31.439 38.453 -8.237 -2.903 -0.581 0.627 10 HIS_LSN3_DHE2 HA HA H 0 1 N N N 34.155 40.908 -5.439 1.212 -0.687 1.059 11 HIS_LSN3_DHE2 HB2 1HB H 0 1 N N N 31.733 40.750 -4.721 0.539 0.150 -1.797 12 HIS_LSN3_DHE2 HB3 2HB H 0 1 N N N 31.337 41.860 -6.127 0.516 -1.528 -1.204 13 HIS_LSN3_DHE2 HD1 HD1 H 0 1 N N N 33.135 38.521 -5.633 -1.533 1.652 -1.017 14 HIS_LSN3_DHE2 HD2 HD2 H 0 1 N N N 30.577 40.470 -8.292 -1.404 -2.137 0.643 15 HIS_LSN3_DHE2 HE1 HE1 H 0 1 N N N 32.618 36.844 -7.461 -3.772 1.303 0.168 16 HIS_LSN3_DHE2 H1 H1 H 0 1 N N N 33.485 42.227 -3.721 1.517 1.846 -0.393 17 HIS_LSN3_DHE2 H2 H2 H 0 1 N N N 34.301 43.234 -4.714 0.400 1.537 0.778 18 HIS_LSN3_DHE2 H3 H3 H 0 1 N N N 32.669 43.279 -4.667 2.004 1.560 1.155 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIS_LSN3_DHE2 N CA SING N N 1 HIS_LSN3_DHE2 CA C SING N N 2 HIS_LSN3_DHE2 CA CB SING N N 3 HIS_LSN3_DHE2 CA HA SING N N 4 HIS_LSN3_DHE2 C O DOUB N N 5 HIS_LSN3_DHE2 CB CG SING N N 6 HIS_LSN3_DHE2 CB HB2 SING N N 7 HIS_LSN3_DHE2 CB HB3 SING N N 8 HIS_LSN3_DHE2 CG ND1 SING Y N 9 HIS_LSN3_DHE2 CG CD2 DOUB Y N 10 HIS_LSN3_DHE2 ND1 CE1 DOUB Y N 11 HIS_LSN3_DHE2 ND1 HD1 SING N N 12 HIS_LSN3_DHE2 CD2 NE2 SING Y N 13 HIS_LSN3_DHE2 CD2 HD2 SING N N 14 HIS_LSN3_DHE2 CE1 NE2 SING Y N 15 HIS_LSN3_DHE2 CE1 HE1 SING N N 16 HIS_LSN3_DHE2 H1 N SING N N 17 HIS_LSN3_DHE2 H2 N SING N N 18 HIS_LSN3_DHE2 H3 N SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIS_LSN3_DHE2 SMILES ACDLabs 10.04 O=[C-]C(Cc1[nH+]c[n-]c1)[NH3+] HIS_LSN3_DHE2 InChI InChI 1.01 InChI=1/C6H7N3O/c7-5(3-10)1-6-2-8-4-9-6/h2,4-5H,1,7H2/q-2/p+2/t5-/m0/s1 HIS_LSN3_DHE2 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[n-]c[nH+]1)[C-]=O HIS_LSN3_DHE2 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[n-]c[nH+]1)[C-]=O HIS_LSN3_DHE2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)C[C@@H]([C-]=O)[NH3+] HIS_LSN3_DHE2 SMILES "OpenEye OEToolkits" 1.5.0 c1c([nH+]c[n-]1)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIS_LSN3_DHE2 "SYSTEMATIC NAME" ACDLabs 10.04 4-[(2S)-2-ammonio-3-oxopropan-3-idyl]imidazol-3-ium-1-ide HIS_LSN3_DHE2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-imidazol-3-ium-1-id-4-yl-3-oxo-propan-2-yl]azanium # # data_ILE_LEO2 # _chem_comp.id ILE_LEO2 _chem_comp.name "L-ISOLEUCINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ILE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.157 _chem_comp.one_letter_code I _chem_comp.three_letter_code ILE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ILE_LEO2 N N N -1 1 N N N 52.625 76.235 68.049 0.460 1.927 0.215 1 ILE_LEO2 CA CA C 0 1 N N S 52.964 77.620 67.705 0.415 0.488 0.507 2 ILE_LEO2 C C C 0 1 N N N 51.910 78.234 66.791 1.675 -0.167 0.003 3 ILE_LEO2 O O O 0 1 N N N 51.409 77.508 65.911 2.531 0.503 -0.549 4 ILE_LEO2 CB CB C 0 1 N N S 54.346 77.727 66.970 -0.797 -0.136 -0.188 5 ILE_LEO2 CG1 CG1 C 0 1 N N N 54.852 79.179 66.992 -2.077 0.529 0.325 6 ILE_LEO2 CG2 CG2 C 0 1 N N N 54.218 77.237 65.524 -0.844 -1.635 0.117 7 ILE_LEO2 CD1 CD1 C 0 1 N N N 56.126 79.382 66.170 -3.277 -0.006 -0.458 8 ILE_LEO2 OXT OXT O -1 1 N Y N 51.631 79.444 66.958 1.838 -1.367 0.147 9 ILE_LEO2 H H H 0 1 N N N 52.548 75.693 67.212 0.535 2.092 -0.778 10 ILE_LEO2 HA HA H 0 1 N N N 53.012 78.163 68.661 0.333 0.338 1.584 11 ILE_LEO2 HB HB H 0 1 N N N 55.072 77.091 67.497 -0.716 0.014 -1.264 12 ILE_LEO2 HG12 1HG1 H 0 0 N N N 54.065 79.825 66.575 -2.204 0.304 1.383 13 ILE_LEO2 HG13 2HG1 H 0 0 N N N 55.089 79.430 68.036 -2.005 1.608 0.188 14 ILE_LEO2 HG21 1HG2 H 0 0 N N N 54.187 78.102 64.845 -1.707 -2.079 -0.378 15 ILE_LEO2 HG22 2HG2 H 0 0 N N N 55.082 76.605 65.273 0.068 -2.108 -0.248 16 ILE_LEO2 HG23 3HG2 H 0 0 N N N 53.292 76.653 65.416 -0.925 -1.785 1.194 17 ILE_LEO2 HD11 1HD1 H 0 0 N N N 55.870 79.431 65.101 -3.150 0.219 -1.517 18 ILE_LEO2 HD12 2HD1 H 0 0 N N N 56.612 80.321 66.473 -3.349 -1.085 -0.322 19 ILE_LEO2 HD13 3HD1 H 0 0 N N N 56.812 78.540 66.344 -4.189 0.467 -0.094 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILE_LEO2 N CA SING N N 1 ILE_LEO2 N H SING N N 2 ILE_LEO2 CA C SING N N 3 ILE_LEO2 CA CB SING N N 4 ILE_LEO2 CA HA SING N N 5 ILE_LEO2 C O DOUB N N 6 ILE_LEO2 C OXT SING N N 7 ILE_LEO2 CB CG1 SING N N 8 ILE_LEO2 CB CG2 SING N N 9 ILE_LEO2 CB HB SING N N 10 ILE_LEO2 CG1 CD1 SING N N 11 ILE_LEO2 CG1 HG12 SING N N 12 ILE_LEO2 CG1 HG13 SING N N 13 ILE_LEO2 CG2 HG21 SING N N 14 ILE_LEO2 CG2 HG22 SING N N 15 ILE_LEO2 CG2 HG23 SING N N 16 ILE_LEO2 CD1 HD11 SING N N 17 ILE_LEO2 CD1 HD12 SING N N 18 ILE_LEO2 CD1 HD13 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ILE_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])C(C)CC ILE_LEO2 InChI InChI 1.01 InChI=1/C6H12NO2/c1-3-4(2)5(7)6(8)9/h4-5,7H,3H2,1-2H3,(H,8,9)/q-1/p-1/t4-,5-/m0/s1 ILE_LEO2 SMILES_CANONICAL CACTVS 3.341 CC[C@H](C)[C@H]([NH-])C([O-])=O ILE_LEO2 SMILES CACTVS 3.341 CC[CH](C)[CH]([NH-])C([O-])=O ILE_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@H](C)[C@@H](C(=O)[O-])[NH-] ILE_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 CCC(C)C(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ILE_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3S)-2-azanidyl-3-methylpentanoate ILE_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3S)-2-azanidyl-3-methyl-pentanoate # # data_ILE_LEO2H # _chem_comp.id ILE_LEO2H _chem_comp.name "L-ISOLEUCINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N O2" _chem_comp.mon_nstd_parent_comp_id ILE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 130.165 _chem_comp.one_letter_code I _chem_comp.three_letter_code ILE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ILE_LEO2H N N N -1 1 N N N 52.625 76.235 68.049 0.336 1.954 0.348 1 ILE_LEO2H CA CA C 0 1 N N S 52.964 77.620 67.705 0.366 0.497 0.535 2 ILE_LEO2H C C C 0 1 N N N 51.910 78.234 66.791 1.654 -0.054 -0.022 3 ILE_LEO2H O O O 0 1 N N N 51.409 77.508 65.911 2.290 0.588 -0.824 4 ILE_LEO2H CB CB C 0 1 N N S 54.346 77.727 66.970 -0.818 -0.136 -0.199 5 ILE_LEO2H CG1 CG1 C 0 1 N N N 54.852 79.179 66.992 -2.125 0.424 0.366 6 ILE_LEO2H CG2 CG2 C 0 1 N N N 54.218 77.237 65.524 -0.786 -1.653 -0.005 7 ILE_LEO2H CD1 CD1 C 0 1 N N N 56.126 79.382 66.170 -3.304 -0.113 -0.449 8 ILE_LEO2H OXT OXT O 0 1 N Y N 51.631 79.444 66.958 2.095 -1.259 0.375 9 ILE_LEO2H H H H 0 1 N N N 52.548 75.693 67.212 0.396 2.194 -0.630 10 ILE_LEO2H HA HA H 0 1 N N N 53.012 78.163 68.661 0.301 0.265 1.598 11 ILE_LEO2H HB HB H 0 1 N N N 55.072 77.091 67.497 -0.752 0.096 -1.262 12 ILE_LEO2H HG12 1HG1 H 0 0 N N N 54.065 79.825 66.575 -2.233 0.116 1.406 13 ILE_LEO2H HG13 2HG1 H 0 0 N N N 55.089 79.430 68.036 -2.109 1.512 0.308 14 ILE_LEO2H HG21 1HG2 H 0 0 N N N 54.187 78.102 64.845 -1.630 -2.104 -0.527 15 ILE_LEO2H HG22 2HG2 H 0 0 N N N 55.082 76.605 65.273 0.145 -2.052 -0.407 16 ILE_LEO2H HG23 3HG2 H 0 0 N N N 53.292 76.653 65.416 -0.852 -1.885 1.058 17 ILE_LEO2H HD11 1HD1 H 0 0 N N N 55.870 79.431 65.101 -3.196 0.194 -1.490 18 ILE_LEO2H HD12 2HD1 H 0 0 N N N 56.612 80.321 66.473 -3.319 -1.202 -0.392 19 ILE_LEO2H HD13 3HD1 H 0 0 N N N 56.812 78.540 66.344 -4.235 0.285 -0.047 20 ILE_LEO2H HXT HXT H 0 1 N Y N 50.986 79.712 66.314 2.926 -1.570 -0.010 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILE_LEO2H N CA SING N N 1 ILE_LEO2H N H SING N N 2 ILE_LEO2H CA C SING N N 3 ILE_LEO2H CA CB SING N N 4 ILE_LEO2H CA HA SING N N 5 ILE_LEO2H C O DOUB N N 6 ILE_LEO2H C OXT SING N N 7 ILE_LEO2H CB CG1 SING N N 8 ILE_LEO2H CB CG2 SING N N 9 ILE_LEO2H CB HB SING N N 10 ILE_LEO2H CG1 CD1 SING N N 11 ILE_LEO2H CG1 HG12 SING N N 12 ILE_LEO2H CG1 HG13 SING N N 13 ILE_LEO2H CG2 HG21 SING N N 14 ILE_LEO2H CG2 HG22 SING N N 15 ILE_LEO2H CG2 HG23 SING N N 16 ILE_LEO2H CD1 HD11 SING N N 17 ILE_LEO2H CD1 HD12 SING N N 18 ILE_LEO2H CD1 HD13 SING N N 19 ILE_LEO2H OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ILE_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])C(C)CC ILE_LEO2H InChI InChI 1.01 InChI=1/C6H12NO2/c1-3-4(2)5(7)6(8)9/h4-5,7H,3H2,1-2H3,(H,8,9)/q-1/t4-,5-/m0/s1 ILE_LEO2H SMILES_CANONICAL CACTVS 3.341 CC[C@H](C)[C@H]([NH-])C(O)=O ILE_LEO2H SMILES CACTVS 3.341 CC[CH](C)[CH]([NH-])C(O)=O ILE_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@H](C)[C@@H](C(=O)O)[NH-] ILE_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 CCC(C)C(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ILE_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S,2S)-1-carboxy-2-methylbutyl]azanide ILE_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S,3S)-1-hydroxy-3-methyl-1-oxo-pentan-2-yl]azanide # # data_ILE_LFOH # _chem_comp.id ILE_LFOH _chem_comp.name "L-ISOLEUCINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O2" _chem_comp.mon_nstd_parent_comp_id ILE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.173 _chem_comp.one_letter_code I _chem_comp.three_letter_code ILE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ILE_LFOH N N N 0 1 N N N 52.625 76.235 68.049 0.333 1.942 0.313 1 ILE_LFOH CA CA C 0 1 N N S 52.964 77.620 67.705 0.368 0.488 0.521 2 ILE_LFOH C C C 0 1 N N N 51.910 78.234 66.791 1.658 -0.067 -0.025 3 ILE_LFOH O O O 0 1 N N N 51.409 77.508 65.911 2.292 0.566 -0.836 4 ILE_LFOH CB CB C 0 1 N N S 54.346 77.727 66.970 -0.813 -0.160 -0.203 5 ILE_LFOH CG1 CG1 C 0 1 N N N 54.852 79.179 66.992 -2.123 0.403 0.352 6 ILE_LFOH CG2 CG2 C 0 1 N N N 54.218 77.237 65.524 -0.776 -1.674 0.014 7 ILE_LFOH CD1 CD1 C 0 1 N N N 56.126 79.382 66.170 -3.299 -0.151 -0.456 8 ILE_LFOH OXT OXT O 0 1 N Y N 51.631 79.444 66.958 2.104 -1.263 0.390 9 ILE_LFOH HA HA H 0 1 N N N 53.012 78.163 68.661 0.303 0.273 1.588 10 ILE_LFOH HB HB H 0 1 N N N 55.072 77.091 67.497 -0.748 0.055 -1.270 11 ILE_LFOH HG12 1HG1 H 0 0 N N N 54.065 79.825 66.575 -2.231 0.111 1.396 12 ILE_LFOH HG13 2HG1 H 0 0 N N N 55.089 79.430 68.036 -2.112 1.490 0.277 13 ILE_LFOH HG21 1HG2 H 0 0 N N N 54.187 78.102 64.845 -0.842 -1.890 1.081 14 ILE_LFOH HG22 2HG2 H 0 0 N N N 55.082 76.605 65.273 -1.618 -2.136 -0.502 15 ILE_LFOH HG23 3HG2 H 0 0 N N N 53.292 76.653 65.416 0.157 -2.076 -0.381 16 ILE_LFOH HD11 1HD1 H 0 0 N N N 55.870 79.431 65.101 -3.311 -1.238 -0.382 17 ILE_LFOH HD12 2HD1 H 0 0 N N N 56.612 80.321 66.473 -4.232 0.250 -0.061 18 ILE_LFOH HD13 3HD1 H 0 0 N N N 56.812 78.540 66.344 -3.191 0.141 -1.501 19 ILE_LFOH HXT HXT H 0 1 N Y N 50.986 79.712 66.314 2.936 -1.577 0.011 20 ILE_LFOH H1 H1 H 0 1 N N N 52.548 75.693 67.212 0.392 2.168 -0.669 21 ILE_LFOH H2 H2 H 0 1 N N N 53.342 75.851 68.630 -0.493 2.347 0.728 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILE_LFOH N CA SING N N 1 ILE_LFOH CA C SING N N 2 ILE_LFOH CA CB SING N N 3 ILE_LFOH CA HA SING N N 4 ILE_LFOH C O DOUB N N 5 ILE_LFOH C OXT SING N N 6 ILE_LFOH CB CG1 SING N N 7 ILE_LFOH CB CG2 SING N N 8 ILE_LFOH CB HB SING N N 9 ILE_LFOH CG1 CD1 SING N N 10 ILE_LFOH CG1 HG12 SING N N 11 ILE_LFOH CG1 HG13 SING N N 12 ILE_LFOH CG2 HG21 SING N N 13 ILE_LFOH CG2 HG22 SING N N 14 ILE_LFOH CG2 HG23 SING N N 15 ILE_LFOH CD1 HD11 SING N N 16 ILE_LFOH CD1 HD12 SING N N 17 ILE_LFOH CD1 HD13 SING N N 18 ILE_LFOH OXT HXT SING N N 19 ILE_LFOH H1 N SING N N 20 ILE_LFOH H2 N SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ILE_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)C(C)CC ILE_LFOH InChI InChI 1.01 InChI=1/C6H13NO2/c1-3-4(2)5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/t4-,5-/m0/s1 ILE_LFOH SMILES_CANONICAL CACTVS 3.341 CC[C@H](C)[C@H](N)C(O)=O ILE_LFOH SMILES CACTVS 3.341 CC[CH](C)[CH](N)C(O)=O ILE_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@H](C)[C@@H](C(=O)O)N ILE_LFOH SMILES "OpenEye OEToolkits" 1.5.0 CCC(C)C(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ILE_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-isoleucine ILE_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S)-2-amino-3-methyl-pentanoic acid" # # data_ILE_LFZW # _chem_comp.id ILE_LFZW _chem_comp.name "L-ISOLEUCINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O2" _chem_comp.mon_nstd_parent_comp_id ILE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.173 _chem_comp.one_letter_code I _chem_comp.three_letter_code ILE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ILE_LFZW N N N 1 1 N N N 52.625 76.235 68.049 0.467 1.891 0.164 1 ILE_LFZW CA CA C 0 1 N N S 52.964 77.620 67.705 0.412 0.460 0.487 2 ILE_LFZW C C C 0 1 N N N 51.910 78.234 66.791 1.667 -0.215 -0.004 3 ILE_LFZW O O O 0 1 N N N 51.409 77.508 65.911 2.527 0.437 -0.572 4 ILE_LFZW CB CB C 0 1 N N S 54.346 77.727 66.970 -0.805 -0.171 -0.192 5 ILE_LFZW CG1 CG1 C 0 1 N N N 54.852 79.179 66.992 -2.079 0.514 0.307 6 ILE_LFZW CG2 CG2 C 0 1 N N N 54.218 77.237 65.524 -0.862 -1.662 0.145 7 ILE_LFZW CD1 CD1 C 0 1 N N N 56.126 79.382 66.170 -3.285 -0.029 -0.462 8 ILE_LFZW OXT OXT O -1 1 N Y N 51.631 79.444 66.958 1.822 -1.412 0.165 9 ILE_LFZW HA HA H 0 1 N N N 53.012 78.163 68.661 0.331 0.334 1.567 10 ILE_LFZW HB HB H 0 1 N N N 55.072 77.091 67.497 -0.725 -0.045 -1.272 11 ILE_LFZW HG12 1HG1 H 0 0 N N N 54.065 79.825 66.575 -2.207 0.313 1.371 12 ILE_LFZW HG13 2HG1 H 0 0 N N N 55.089 79.430 68.036 -2.001 1.589 0.147 13 ILE_LFZW HG21 1HG2 H 0 0 N N N 54.187 78.102 64.845 -0.943 -1.788 1.225 14 ILE_LFZW HG22 2HG2 H 0 0 N N N 55.082 76.605 65.273 -1.729 -2.111 -0.339 15 ILE_LFZW HG23 3HG2 H 0 0 N N N 53.292 76.653 65.416 0.045 -2.150 -0.211 16 ILE_LFZW HD11 1HD1 H 0 0 N N N 55.870 79.431 65.101 -3.158 0.171 -1.526 17 ILE_LFZW HD12 2HD1 H 0 0 N N N 56.612 80.321 66.473 -3.364 -1.105 -0.302 18 ILE_LFZW HD13 3HD1 H 0 0 N N N 56.812 78.540 66.344 -4.193 0.458 -0.106 19 ILE_LFZW H1 H1 H 0 1 N N N 52.548 75.693 67.212 0.541 2.008 -0.836 20 ILE_LFZW H2 H2 H 0 1 N N N 53.342 75.851 68.630 -0.374 2.343 0.493 21 ILE_LFZW H3 H3 H 0 1 N N N 51.753 76.217 68.539 1.270 2.307 0.612 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILE_LFZW N CA SING N N 1 ILE_LFZW CA C SING N N 2 ILE_LFZW CA CB SING N N 3 ILE_LFZW CA HA SING N N 4 ILE_LFZW C O DOUB N N 5 ILE_LFZW C OXT SING N N 6 ILE_LFZW CB CG1 SING N N 7 ILE_LFZW CB CG2 SING N N 8 ILE_LFZW CB HB SING N N 9 ILE_LFZW CG1 CD1 SING N N 10 ILE_LFZW CG1 HG12 SING N N 11 ILE_LFZW CG1 HG13 SING N N 12 ILE_LFZW CG2 HG21 SING N N 13 ILE_LFZW CG2 HG22 SING N N 14 ILE_LFZW CG2 HG23 SING N N 15 ILE_LFZW CD1 HD11 SING N N 16 ILE_LFZW CD1 HD12 SING N N 17 ILE_LFZW CD1 HD13 SING N N 18 ILE_LFZW H1 N SING N N 19 ILE_LFZW H2 N SING N N 20 ILE_LFZW H3 N SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ILE_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])C(C)CC ILE_LFZW InChI InChI 1.01 InChI=1/C6H13NO2/c1-3-4(2)5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/t4-,5-/m0/s1 ILE_LFZW SMILES_CANONICAL CACTVS 3.341 CC[C@H](C)[C@H]([NH3+])C([O-])=O ILE_LFZW SMILES CACTVS 3.341 CC[CH](C)[CH]([NH3+])C([O-])=O ILE_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@H](C)[C@@H](C(=O)[O-])[NH3+] ILE_LFZW SMILES "OpenEye OEToolkits" 1.5.0 CCC(C)C(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ILE_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3S)-2-ammonio-3-methylpentanoate ILE_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3S)-2-azaniumyl-3-methyl-pentanoate # # data_ILE_LL # _chem_comp.id ILE_LL _chem_comp.name "L-ISOLEUCINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O" _chem_comp.mon_nstd_parent_comp_id ILE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 113.158 _chem_comp.one_letter_code I _chem_comp.three_letter_code ILE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ILE_LL N N N -1 1 N N N 52.625 76.235 68.049 0.881 1.694 -0.042 1 ILE_LL CA CA C 0 1 N N S 52.964 77.620 67.705 0.713 0.278 0.310 2 ILE_LL C C C -1 1 N N N 51.910 78.234 66.791 1.838 -0.526 -0.289 3 ILE_LL O O O 0 1 N N N 51.409 77.508 65.911 2.981 -0.283 0.013 4 ILE_LL CB CB C 0 1 N N S 54.346 77.727 66.970 -0.623 -0.229 -0.236 5 ILE_LL CG1 CG1 C 0 1 N N N 54.852 79.179 66.992 -1.765 0.587 0.373 6 ILE_LL CG2 CG2 C 0 1 N N N 54.218 77.237 65.524 -0.798 -1.704 0.132 7 ILE_LL CD1 CD1 C 0 1 N N N 56.126 79.382 66.170 -3.090 0.166 -0.265 8 ILE_LL H H H 0 1 N N N 52.548 75.693 67.212 0.871 1.821 -1.043 9 ILE_LL HA HA H 0 1 N N N 53.012 78.163 68.661 0.727 0.169 1.395 10 ILE_LL HB HB H 0 1 N N N 55.072 77.091 67.497 -0.637 -0.120 -1.320 11 ILE_LL HG12 1HG1 H 0 0 N N N 54.065 79.825 66.575 -1.807 0.409 1.448 12 ILE_LL HG13 2HG1 H 0 0 N N N 55.089 79.430 68.036 -1.594 1.648 0.188 13 ILE_LL HG21 1HG2 H 0 0 N N N 54.187 78.102 64.845 -1.750 -2.065 -0.257 14 ILE_LL HG22 2HG2 H 0 0 N N N 55.082 76.605 65.273 0.015 -2.285 -0.302 15 ILE_LL HG23 3HG2 H 0 0 N N N 53.292 76.653 65.416 -0.784 -1.812 1.216 16 ILE_LL HD11 1HD1 H 0 0 N N N 55.870 79.431 65.101 -3.904 0.747 0.169 17 ILE_LL HD12 2HD1 H 0 0 N N N 56.612 80.321 66.473 -3.049 0.344 -1.339 18 ILE_LL HD13 3HD1 H 0 0 N N N 56.812 78.540 66.344 -3.262 -0.895 -0.079 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILE_LL N CA SING N N 1 ILE_LL N H SING N N 2 ILE_LL CA C SING N N 3 ILE_LL CA CB SING N N 4 ILE_LL CA HA SING N N 5 ILE_LL C O DOUB N N 6 ILE_LL CB CG1 SING N N 7 ILE_LL CB CG2 SING N N 8 ILE_LL CB HB SING N N 9 ILE_LL CG1 CD1 SING N N 10 ILE_LL CG1 HG12 SING N N 11 ILE_LL CG1 HG13 SING N N 12 ILE_LL CG2 HG21 SING N N 13 ILE_LL CG2 HG22 SING N N 14 ILE_LL CG2 HG23 SING N N 15 ILE_LL CD1 HD11 SING N N 16 ILE_LL CD1 HD12 SING N N 17 ILE_LL CD1 HD13 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ILE_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])C(C)CC ILE_LL InChI InChI 1.01 InChI=1/C6H11NO/c1-3-5(2)6(7)4-8/h5-7H,3H2,1-2H3/q-2/t5-,6+/m0/s1 ILE_LL SMILES_CANONICAL CACTVS 3.341 CC[C@H](C)[C@H]([NH-])[C-]=O ILE_LL SMILES CACTVS 3.341 CC[CH](C)[CH]([NH-])[C-]=O ILE_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@H](C)[C@@H]([C-]=O)[NH-] ILE_LL SMILES "OpenEye OEToolkits" 1.5.0 CCC(C)C([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ILE_LL "SYSTEMATIC NAME" ACDLabs 10.04 {(1S)-1-[(1S)-1-methylpropyl]-2-oxoethan-2-idyl}azanide ILE_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S,3S)-3-methyl-1-oxo-pentan-2-yl]azanide # # data_ILE_LSN3 # _chem_comp.id ILE_LSN3 _chem_comp.name "L-ISOLEUCINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O" _chem_comp.mon_nstd_parent_comp_id ILE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 115.174 _chem_comp.one_letter_code I _chem_comp.three_letter_code ILE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ILE_LSN3 N N N 1 1 N N N 52.625 76.235 68.049 0.885 1.645 -0.074 1 ILE_LSN3 CA CA C 0 1 N N S 52.964 77.620 67.705 0.700 0.236 0.300 2 ILE_LSN3 C C C -1 1 N N N 51.910 78.234 66.791 1.814 -0.590 -0.290 3 ILE_LSN3 O O O 0 1 N N N 51.409 77.508 65.911 2.961 -0.358 0.008 4 ILE_LSN3 CB CB C 0 1 N N S 54.346 77.727 66.970 -0.644 -0.261 -0.237 5 ILE_LSN3 CG1 CG1 C 0 1 N N N 54.852 79.179 66.992 -1.774 0.578 0.362 6 ILE_LSN3 CG2 CG2 C 0 1 N N N 54.218 77.237 65.524 -0.836 -1.728 0.152 7 ILE_LSN3 CD1 CD1 C 0 1 N N N 56.126 79.382 66.170 -3.105 0.164 -0.268 8 ILE_LSN3 HA HA H 0 1 N N N 53.012 78.163 68.661 0.714 0.144 1.386 9 ILE_LSN3 HB HB H 0 1 N N N 55.072 77.091 67.497 -0.658 -0.168 -1.323 10 ILE_LSN3 HG12 1HG1 H 0 0 N N N 54.065 79.825 66.575 -1.816 0.416 1.439 11 ILE_LSN3 HG13 2HG1 H 0 0 N N N 55.089 79.430 68.036 -1.589 1.633 0.160 12 ILE_LSN3 HG21 1HG2 H 0 0 N N N 54.187 78.102 64.845 -0.822 -1.821 1.238 13 ILE_LSN3 HG22 2HG2 H 0 0 N N N 55.082 76.605 65.273 -1.794 -2.083 -0.230 14 ILE_LSN3 HG23 3HG2 H 0 0 N N N 53.292 76.653 65.416 -0.031 -2.326 -0.274 15 ILE_LSN3 HD11 1HD1 H 0 0 N N N 55.870 79.431 65.101 -3.064 0.326 -1.345 16 ILE_LSN3 HD12 2HD1 H 0 0 N N N 56.612 80.321 66.473 -3.290 -0.891 -0.067 17 ILE_LSN3 HD13 3HD1 H 0 0 N N N 56.812 78.540 66.344 -3.911 0.762 0.158 18 ILE_LSN3 H1 H1 H 0 1 N N N 52.548 75.693 67.212 0.872 1.731 -1.079 19 ILE_LSN3 H2 H2 H 0 1 N N N 53.342 75.851 68.630 0.140 2.198 0.321 20 ILE_LSN3 H3 H3 H 0 1 N N N 51.753 76.217 68.539 1.771 1.973 0.280 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILE_LSN3 N CA SING N N 1 ILE_LSN3 CA C SING N N 2 ILE_LSN3 CA CB SING N N 3 ILE_LSN3 CA HA SING N N 4 ILE_LSN3 C O DOUB N N 5 ILE_LSN3 CB CG1 SING N N 6 ILE_LSN3 CB CG2 SING N N 7 ILE_LSN3 CB HB SING N N 8 ILE_LSN3 CG1 CD1 SING N N 9 ILE_LSN3 CG1 HG12 SING N N 10 ILE_LSN3 CG1 HG13 SING N N 11 ILE_LSN3 CG2 HG21 SING N N 12 ILE_LSN3 CG2 HG22 SING N N 13 ILE_LSN3 CG2 HG23 SING N N 14 ILE_LSN3 CD1 HD11 SING N N 15 ILE_LSN3 CD1 HD12 SING N N 16 ILE_LSN3 CD1 HD13 SING N N 17 ILE_LSN3 H1 N SING N N 18 ILE_LSN3 H2 N SING N N 19 ILE_LSN3 H3 N SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ILE_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])C(C)CC ILE_LSN3 InChI InChI 1.01 InChI=1/C6H12NO/c1-3-5(2)6(7)4-8/h5-6H,3,7H2,1-2H3/q-1/p+1/t5-,6+/m0/s1 ILE_LSN3 SMILES_CANONICAL CACTVS 3.341 CC[C@H](C)[C@H]([NH3+])[C-]=O ILE_LSN3 SMILES CACTVS 3.341 CC[CH](C)[CH]([NH3+])[C-]=O ILE_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@H](C)[C@@H]([C-]=O)[NH3+] ILE_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 CCC(C)C([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ILE_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3S)-2-ammonio-3-methyl-1-oxopentan-1-ide ILE_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S,3S)-3-methyl-1-oxo-pentan-2-yl]azanium # # data_LEU_LEO2 # _chem_comp.id LEU_LEO2 _chem_comp.name "L-LEUCINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O2" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.157 _chem_comp.one_letter_code L _chem_comp.three_letter_code LEU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LEU_LEO2 N N N -1 1 N N N 16.293 15.907 52.123 0.533 -1.712 -0.447 1 LEU_LEO2 CA CA C 0 1 N N S 15.121 16.772 51.804 0.508 -0.243 -0.431 2 LEU_LEO2 C C C 0 1 N N N 13.865 15.975 51.517 1.851 0.277 0.013 3 LEU_LEO2 O O O 0 1 N N N 12.808 16.576 51.643 2.105 1.466 -0.079 4 LEU_LEO2 CB CB C 0 1 N N N 15.395 17.657 50.575 -0.571 0.238 0.541 5 LEU_LEO2 CG CG C 0 1 N N N 16.407 18.798 50.632 -1.944 -0.222 0.046 6 LEU_LEO2 CD1 CD1 C 0 1 N N N 16.398 19.395 52.065 -3.007 0.132 1.089 7 LEU_LEO2 CD2 CD2 C 0 1 N N N 17.792 18.247 50.210 -2.272 0.478 -1.274 8 LEU_LEO2 OXT OXT O -1 1 N Y N 13.877 14.786 51.211 2.684 -0.491 0.463 9 LEU_LEO2 H H H 0 1 N N N 16.803 15.713 51.285 0.736 -2.080 0.471 10 LEU_LEO2 HA HA H 0 1 N N N 14.965 17.388 52.702 0.287 0.127 -1.432 11 LEU_LEO2 HB2 1HB H 0 1 N N N 15.758 16.975 49.792 -0.383 -0.180 1.530 12 LEU_LEO2 HB3 2HB H 0 1 N N N 14.439 18.181 50.430 -0.551 1.326 0.596 13 LEU_LEO2 HG HG H 0 1 N N N 16.152 19.612 49.937 -1.932 -1.301 -0.108 14 LEU_LEO2 HD11 1HD1 H 0 0 N N N 16.396 18.579 52.803 -2.799 -0.403 2.016 15 LEU_LEO2 HD12 2HD1 H 0 0 N N N 17.294 20.017 52.209 -2.988 1.205 1.277 16 LEU_LEO2 HD13 3HD1 H 0 0 N N N 15.498 20.012 52.199 -3.990 -0.155 0.717 17 LEU_LEO2 HD21 1HD2 H 0 0 N N N 17.818 18.116 49.118 -1.515 0.226 -2.017 18 LEU_LEO2 HD22 2HD2 H 0 0 N N N 18.576 18.956 50.513 -3.250 0.150 -1.626 19 LEU_LEO2 HD23 3HD2 H 0 0 N N N 17.965 17.277 50.699 -2.284 1.557 -1.119 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LEU_LEO2 N CA SING N N 1 LEU_LEO2 N H SING N N 2 LEU_LEO2 CA C SING N N 3 LEU_LEO2 CA CB SING N N 4 LEU_LEO2 CA HA SING N N 5 LEU_LEO2 C O DOUB N N 6 LEU_LEO2 C OXT SING N N 7 LEU_LEO2 CB CG SING N N 8 LEU_LEO2 CB HB2 SING N N 9 LEU_LEO2 CB HB3 SING N N 10 LEU_LEO2 CG CD1 SING N N 11 LEU_LEO2 CG CD2 SING N N 12 LEU_LEO2 CG HG SING N N 13 LEU_LEO2 CD1 HD11 SING N N 14 LEU_LEO2 CD1 HD12 SING N N 15 LEU_LEO2 CD1 HD13 SING N N 16 LEU_LEO2 CD2 HD21 SING N N 17 LEU_LEO2 CD2 HD22 SING N N 18 LEU_LEO2 CD2 HD23 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LEU_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CC(C)C LEU_LEO2 InChI InChI 1.01 InChI=1/C6H12NO2/c1-4(2)3-5(7)6(8)9/h4-5,7H,3H2,1-2H3,(H,8,9)/q-1/p-1/t5-/m0/s1 LEU_LEO2 SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H]([NH-])C([O-])=O LEU_LEO2 SMILES CACTVS 3.341 CC(C)C[CH]([NH-])C([O-])=O LEU_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@@H](C(=O)[O-])[NH-] LEU_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LEU_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-4-methylpentanoate LEU_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-4-methyl-pentanoate # # data_LEU_LEO2H # _chem_comp.id LEU_LEO2H _chem_comp.name "L-LEUCINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N O2" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 130.165 _chem_comp.one_letter_code L _chem_comp.three_letter_code LEU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LEU_LEO2H N N N -1 1 N N N 16.293 15.907 52.123 0.452 1.667 0.709 1 LEU_LEO2H CA CA C 0 1 N N S 15.121 16.772 51.804 0.473 0.218 0.466 2 LEU_LEO2H C C C 0 1 N N N 13.865 15.975 51.517 1.831 -0.185 -0.049 3 LEU_LEO2H O O O 0 1 N N N 12.808 16.576 51.643 2.562 0.644 -0.537 4 LEU_LEO2H CB CB C 0 1 N N N 15.395 17.657 50.575 -0.593 -0.140 -0.572 5 LEU_LEO2H CG CG C 0 1 N N N 16.407 18.798 50.632 -1.978 0.194 -0.016 6 LEU_LEO2H CD1 CD1 C 0 1 N N N 16.398 19.395 52.065 -3.031 -0.027 -1.104 7 LEU_LEO2H CD2 CD2 C 0 1 N N N 17.792 18.247 50.210 -2.281 -0.713 1.178 8 LEU_LEO2H OXT OXT O 0 1 N Y N 13.877 14.786 51.211 2.228 -1.464 0.035 9 LEU_LEO2H H H H 0 1 N N N 16.803 15.713 51.285 0.641 2.179 -0.140 10 LEU_LEO2H HA HA H 0 1 N N N 14.965 17.388 52.702 0.266 -0.309 1.397 11 LEU_LEO2H HB2 1HB H 0 1 N N N 15.758 16.975 49.792 -0.419 0.432 -1.484 12 LEU_LEO2H HB3 2HB H 0 1 N N N 14.439 18.181 50.430 -0.538 -1.206 -0.795 13 LEU_LEO2H HG HG H 0 1 N N N 16.152 19.612 49.937 -2.000 1.235 0.304 14 LEU_LEO2H HD11 1HD1 H 0 0 N N N 16.396 18.579 52.803 -2.842 0.651 -1.936 15 LEU_LEO2H HD12 2HD1 H 0 0 N N N 17.294 20.017 52.209 -2.978 -1.058 -1.457 16 LEU_LEO2H HD13 3HD1 H 0 0 N N N 15.498 20.012 52.199 -4.023 0.166 -0.695 17 LEU_LEO2H HD21 1HD2 H 0 0 N N N 17.818 18.116 49.118 -1.531 -0.555 1.954 18 LEU_LEO2H HD22 2HD2 H 0 0 N N N 18.576 18.956 50.513 -3.268 -0.475 1.574 19 LEU_LEO2H HD23 3HD2 H 0 0 N N N 17.965 17.277 50.699 -2.259 -1.755 0.858 20 LEU_LEO2H HXT HXT H 0 1 N Y N 12.985 14.476 51.107 3.107 -1.674 -0.308 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LEU_LEO2H N CA SING N N 1 LEU_LEO2H N H SING N N 2 LEU_LEO2H CA C SING N N 3 LEU_LEO2H CA CB SING N N 4 LEU_LEO2H CA HA SING N N 5 LEU_LEO2H C O DOUB N N 6 LEU_LEO2H C OXT SING N N 7 LEU_LEO2H CB CG SING N N 8 LEU_LEO2H CB HB2 SING N N 9 LEU_LEO2H CB HB3 SING N N 10 LEU_LEO2H CG CD1 SING N N 11 LEU_LEO2H CG CD2 SING N N 12 LEU_LEO2H CG HG SING N N 13 LEU_LEO2H CD1 HD11 SING N N 14 LEU_LEO2H CD1 HD12 SING N N 15 LEU_LEO2H CD1 HD13 SING N N 16 LEU_LEO2H CD2 HD21 SING N N 17 LEU_LEO2H CD2 HD22 SING N N 18 LEU_LEO2H CD2 HD23 SING N N 19 LEU_LEO2H OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LEU_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])CC(C)C LEU_LEO2H InChI InChI 1.01 InChI=1/C6H12NO2/c1-4(2)3-5(7)6(8)9/h4-5,7H,3H2,1-2H3,(H,8,9)/q-1/t5-/m0/s1 LEU_LEO2H SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H]([NH-])C(O)=O LEU_LEO2H SMILES CACTVS 3.341 CC(C)C[CH]([NH-])C(O)=O LEU_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@@H](C(=O)O)[NH-] LEU_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LEU_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-3-methylbutyl]azanide LEU_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-4-methyl-1-oxo-pentan-2-yl]azanide # # data_LEU_LFOH # _chem_comp.id LEU_LFOH _chem_comp.name "L-LEUCINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O2" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.173 _chem_comp.one_letter_code L _chem_comp.three_letter_code LEU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LEU_LFOH N N N 0 1 N N N 16.293 15.907 52.123 0.468 1.698 0.609 1 LEU_LFOH CA CA C 0 1 N N S 15.121 16.772 51.804 0.474 0.239 0.441 2 LEU_LFOH C C C 0 1 N N N 13.865 15.975 51.517 1.830 -0.205 -0.046 3 LEU_LFOH O O O 0 1 N N N 12.808 16.576 51.643 2.572 0.590 -0.573 4 LEU_LFOH CB CB C 0 1 N N N 15.395 17.657 50.575 -0.591 -0.162 -0.581 5 LEU_LFOH CG CG C 0 1 N N N 16.407 18.798 50.632 -1.978 0.176 -0.031 6 LEU_LFOH CD1 CD1 C 0 1 N N N 16.398 19.395 52.065 -3.034 -0.108 -1.101 7 LEU_LFOH CD2 CD2 C 0 1 N N N 17.792 18.247 50.210 -2.260 -0.682 1.204 8 LEU_LFOH OXT OXT O 0 1 N Y N 13.877 14.786 51.211 2.212 -1.482 0.105 9 LEU_LFOH HA HA H 0 1 N N N 14.965 17.388 52.702 0.258 -0.238 1.397 10 LEU_LFOH HB2 1HB H 0 1 N N N 15.758 16.975 49.792 -0.426 0.384 -1.510 11 LEU_LFOH HB3 2HB H 0 1 N N N 14.439 18.181 50.430 -0.527 -1.233 -0.772 12 LEU_LFOH HG HG H 0 1 N N N 16.152 19.612 49.937 -2.014 1.230 0.243 13 LEU_LFOH HD11 1HD1 H 0 0 N N N 16.396 18.579 52.803 -2.999 -1.163 -1.375 14 LEU_LFOH HD12 2HD1 H 0 0 N N N 17.294 20.017 52.209 -4.023 0.132 -0.709 15 LEU_LFOH HD13 3HD1 H 0 0 N N N 15.498 20.012 52.199 -2.834 0.503 -1.981 16 LEU_LFOH HD21 1HD2 H 0 0 N N N 17.818 18.116 49.118 -1.508 -0.479 1.966 17 LEU_LFOH HD22 2HD2 H 0 0 N N N 18.576 18.956 50.513 -3.248 -0.441 1.596 18 LEU_LFOH HD23 3HD2 H 0 0 N N N 17.965 17.277 50.699 -2.225 -1.736 0.930 19 LEU_LFOH HXT HXT H 0 1 N Y N 12.985 14.476 51.107 3.091 -1.720 -0.223 20 LEU_LFOH H1 H1 H 0 1 N N N 16.803 15.713 51.285 0.666 2.163 -0.263 21 LEU_LFOH H2 H2 H 0 1 N N N 16.888 16.379 52.774 -0.409 2.013 0.997 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LEU_LFOH N CA SING N N 1 LEU_LFOH CA C SING N N 2 LEU_LFOH CA CB SING N N 3 LEU_LFOH CA HA SING N N 4 LEU_LFOH C O DOUB N N 5 LEU_LFOH C OXT SING N N 6 LEU_LFOH CB CG SING N N 7 LEU_LFOH CB HB2 SING N N 8 LEU_LFOH CB HB3 SING N N 9 LEU_LFOH CG CD1 SING N N 10 LEU_LFOH CG CD2 SING N N 11 LEU_LFOH CG HG SING N N 12 LEU_LFOH CD1 HD11 SING N N 13 LEU_LFOH CD1 HD12 SING N N 14 LEU_LFOH CD1 HD13 SING N N 15 LEU_LFOH CD2 HD21 SING N N 16 LEU_LFOH CD2 HD22 SING N N 17 LEU_LFOH CD2 HD23 SING N N 18 LEU_LFOH OXT HXT SING N N 19 LEU_LFOH H1 N SING N N 20 LEU_LFOH H2 N SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LEU_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)CC(C)C LEU_LFOH InChI InChI 1.01 InChI=1/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/t5-/m0/s1 LEU_LFOH SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H](N)C(O)=O LEU_LFOH SMILES CACTVS 3.341 CC(C)C[CH](N)C(O)=O LEU_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@@H](C(=O)O)N LEU_LFOH SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LEU_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-leucine LEU_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-methyl-pentanoic acid" # # data_LEU_LFZW # _chem_comp.id LEU_LFZW _chem_comp.name "L-LEUCINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O2" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.173 _chem_comp.one_letter_code L _chem_comp.three_letter_code LEU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LEU_LFZW N N N 1 1 N N N 16.293 15.907 52.123 0.562 1.735 0.090 1 LEU_LFZW CA CA C 0 1 N N S 15.121 16.772 51.804 0.505 0.292 0.358 2 LEU_LFZW C C C 0 1 N N N 13.865 15.975 51.517 1.835 -0.333 0.027 3 LEU_LFZW O O O 0 1 N N N 12.808 16.576 51.643 2.747 0.359 -0.393 4 LEU_LFZW CB CB C 0 1 N N N 15.395 17.657 50.575 -0.586 -0.344 -0.506 5 LEU_LFZW CG CG C 0 1 N N N 16.407 18.798 50.632 -1.953 0.201 -0.084 6 LEU_LFZW CD1 CD1 C 0 1 N N N 16.398 19.395 52.065 -3.030 -0.339 -1.027 7 LEU_LFZW CD2 CD2 C 0 1 N N N 17.792 18.247 50.210 -2.259 -0.244 1.348 8 LEU_LFZW OXT OXT O -1 1 N Y N 13.877 14.786 51.211 2.000 -1.532 0.180 9 LEU_LFZW HA HA H 0 1 N N N 14.965 17.388 52.702 0.277 0.127 1.411 10 LEU_LFZW HB2 1HB H 0 1 N N N 15.758 16.975 49.792 -0.407 -0.103 -1.554 11 LEU_LFZW HB3 2HB H 0 1 N N N 14.439 18.181 50.430 -0.570 -1.426 -0.373 12 LEU_LFZW HG HG H 0 1 N N N 16.152 19.612 49.937 -1.940 1.290 -0.132 13 LEU_LFZW HD11 1HD1 H 0 0 N N N 16.396 18.579 52.803 -3.043 -1.428 -0.979 14 LEU_LFZW HD12 2HD1 H 0 0 N N N 17.294 20.017 52.209 -4.003 0.049 -0.726 15 LEU_LFZW HD13 3HD1 H 0 0 N N N 15.498 20.012 52.199 -2.812 -0.022 -2.047 16 LEU_LFZW HD21 1HD2 H 0 0 N N N 17.818 18.116 49.118 -2.272 -1.332 1.395 17 LEU_LFZW HD22 2HD2 H 0 0 N N N 18.576 18.956 50.513 -1.492 0.141 2.020 18 LEU_LFZW HD23 3HD2 H 0 0 N N N 17.965 17.277 50.699 -3.232 0.144 1.648 19 LEU_LFZW H1 H1 H 0 1 N N N 16.803 15.713 51.285 0.773 1.888 -0.885 20 LEU_LFZW H2 H2 H 0 1 N N N 16.888 16.379 52.774 -0.329 2.154 0.311 21 LEU_LFZW H3 H3 H 0 1 N N N 15.974 15.049 52.525 1.282 2.155 0.659 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LEU_LFZW N CA SING N N 1 LEU_LFZW CA C SING N N 2 LEU_LFZW CA CB SING N N 3 LEU_LFZW CA HA SING N N 4 LEU_LFZW C O DOUB N N 5 LEU_LFZW C OXT SING N N 6 LEU_LFZW CB CG SING N N 7 LEU_LFZW CB HB2 SING N N 8 LEU_LFZW CB HB3 SING N N 9 LEU_LFZW CG CD1 SING N N 10 LEU_LFZW CG CD2 SING N N 11 LEU_LFZW CG HG SING N N 12 LEU_LFZW CD1 HD11 SING N N 13 LEU_LFZW CD1 HD12 SING N N 14 LEU_LFZW CD1 HD13 SING N N 15 LEU_LFZW CD2 HD21 SING N N 16 LEU_LFZW CD2 HD22 SING N N 17 LEU_LFZW CD2 HD23 SING N N 18 LEU_LFZW H1 N SING N N 19 LEU_LFZW H2 N SING N N 20 LEU_LFZW H3 N SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LEU_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CC(C)C LEU_LFZW InChI InChI 1.01 InChI=1/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/t5-/m0/s1 LEU_LFZW SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H]([NH3+])C([O-])=O LEU_LFZW SMILES CACTVS 3.341 CC(C)C[CH]([NH3+])C([O-])=O LEU_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@@H](C(=O)[O-])[NH3+] LEU_LFZW SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LEU_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-4-methylpentanoate LEU_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-4-methyl-pentanoate # # data_LEU_LL # _chem_comp.id LEU_LL _chem_comp.name "L-LEUCINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 113.158 _chem_comp.one_letter_code L _chem_comp.three_letter_code LEU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LEU_LL N N N -1 1 N N N 16.293 15.907 52.123 0.980 0.321 1.488 1 LEU_LL CA CA C 0 1 N N S 15.121 16.772 51.804 0.817 -0.153 0.107 2 LEU_LL C C C -1 1 N N N 13.865 15.975 51.517 2.042 0.207 -0.695 3 LEU_LL O O O 0 1 N N N 12.808 16.576 51.643 3.124 -0.215 -0.367 4 LEU_LL CB CB C 0 1 N N N 15.395 17.657 50.575 -0.414 0.508 -0.517 5 LEU_LL CG CG C 0 1 N N N 16.407 18.798 50.632 -1.671 0.043 0.221 6 LEU_LL CD1 CD1 C 0 1 N N N 16.398 19.395 52.065 -2.887 0.797 -0.320 7 LEU_LL CD2 CD2 C 0 1 N N N 17.792 18.247 50.210 -1.863 -1.459 0.004 8 LEU_LL H H H 0 1 N N N 16.803 15.713 51.285 1.101 1.322 1.515 9 LEU_LL HA HA H 0 1 N N N 14.965 17.388 52.702 0.688 -1.235 0.107 10 LEU_LL HB2 1HB H 0 1 N N N 15.758 16.975 49.792 -0.325 1.591 -0.436 11 LEU_LL HB3 2HB H 0 1 N N N 14.439 18.181 50.430 -0.484 0.226 -1.567 12 LEU_LL HG HG H 0 1 N N N 16.152 19.612 49.937 -1.562 0.245 1.287 13 LEU_LL HD11 1HD1 H 0 0 N N N 16.396 18.579 52.803 -2.996 0.595 -1.385 14 LEU_LL HD12 2HD1 H 0 0 N N N 17.294 20.017 52.209 -3.783 0.466 0.206 15 LEU_LL HD13 3HD1 H 0 0 N N N 15.498 20.012 52.199 -2.750 1.867 -0.165 16 LEU_LL HD21 1HD2 H 0 0 N N N 17.818 18.116 49.118 -1.972 -1.661 -1.061 17 LEU_LL HD22 2HD2 H 0 0 N N N 18.576 18.956 50.513 -0.997 -1.996 0.389 18 LEU_LL HD23 3HD2 H 0 0 N N N 17.965 17.277 50.699 -2.759 -1.790 0.530 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LEU_LL N CA SING N N 1 LEU_LL N H SING N N 2 LEU_LL CA C SING N N 3 LEU_LL CA CB SING N N 4 LEU_LL CA HA SING N N 5 LEU_LL C O DOUB N N 6 LEU_LL CB CG SING N N 7 LEU_LL CB HB2 SING N N 8 LEU_LL CB HB3 SING N N 9 LEU_LL CG CD1 SING N N 10 LEU_LL CG CD2 SING N N 11 LEU_LL CG HG SING N N 12 LEU_LL CD1 HD11 SING N N 13 LEU_LL CD1 HD12 SING N N 14 LEU_LL CD1 HD13 SING N N 15 LEU_LL CD2 HD21 SING N N 16 LEU_LL CD2 HD22 SING N N 17 LEU_LL CD2 HD23 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LEU_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CC(C)C LEU_LL InChI InChI 1.01 InChI=1/C6H11NO/c1-5(2)3-6(7)4-8/h5-7H,3H2,1-2H3/q-2/t6-/m0/s1 LEU_LL SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H]([NH-])[C-]=O LEU_LL SMILES CACTVS 3.341 CC(C)C[CH]([NH-])[C-]=O LEU_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@@H]([C-]=O)[NH-] LEU_LL SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LEU_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(2-methylpropyl)-2-oxoethan-2-idyl]azanide LEU_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-methyl-1-oxo-pentan-2-yl]azanide # # data_LEU_LSN3 # _chem_comp.id LEU_LSN3 _chem_comp.name "L-LEUCINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 115.174 _chem_comp.one_letter_code L _chem_comp.three_letter_code LEU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LEU_LSN3 N N N 1 1 N N N 16.293 15.907 52.123 0.976 1.433 -0.372 1 LEU_LSN3 CA CA C 0 1 N N S 15.121 16.772 51.804 0.801 0.071 0.149 2 LEU_LSN3 C C C -1 1 N N N 13.865 15.975 51.517 2.018 -0.754 -0.183 3 LEU_LSN3 O O O 0 1 N N N 12.808 16.576 51.643 3.103 -0.422 0.228 4 LEU_LSN3 CB CB C 0 1 N N N 15.395 17.657 50.575 -0.436 -0.564 -0.489 5 LEU_LSN3 CG CG C 0 1 N N N 16.407 18.798 50.632 -1.686 0.201 -0.050 6 LEU_LSN3 CD1 CD1 C 0 1 N N N 16.398 19.395 52.065 -2.908 -0.354 -0.784 7 LEU_LSN3 CD2 CD2 C 0 1 N N N 17.792 18.247 50.210 -1.880 0.038 1.459 8 LEU_LSN3 HA HA H 0 1 N N N 14.965 17.388 52.702 0.673 0.110 1.231 9 LEU_LSN3 HB2 1HB H 0 1 N N N 15.758 16.975 49.792 -0.347 -0.522 -1.574 10 LEU_LSN3 HB3 2HB H 0 1 N N N 14.439 18.181 50.430 -0.516 -1.604 -0.170 11 LEU_LSN3 HG HG H 0 1 N N N 16.152 19.612 49.937 -1.568 1.258 -0.289 12 LEU_LSN3 HD11 1HD1 H 0 0 N N N 16.396 18.579 52.803 -3.026 -1.411 -0.545 13 LEU_LSN3 HD12 2HD1 H 0 0 N N N 17.294 20.017 52.209 -3.799 0.191 -0.471 14 LEU_LSN3 HD13 3HD1 H 0 0 N N N 15.498 20.012 52.199 -2.770 -0.238 -1.859 15 LEU_LSN3 HD21 1HD2 H 0 0 N N N 17.818 18.116 49.118 -1.010 0.434 1.982 16 LEU_LSN3 HD22 2HD2 H 0 0 N N N 18.576 18.956 50.513 -2.771 0.583 1.772 17 LEU_LSN3 HD23 3HD2 H 0 0 N N N 17.965 17.277 50.699 -1.998 -1.019 1.698 18 LEU_LSN3 H1 H1 H 0 1 N N N 16.803 15.713 51.285 1.095 1.398 -1.373 19 LEU_LSN3 H2 H2 H 0 1 N N N 16.888 16.379 52.774 0.162 1.986 -0.149 20 LEU_LSN3 H3 H3 H 0 1 N N N 15.974 15.049 52.525 1.792 1.852 0.049 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LEU_LSN3 N CA SING N N 1 LEU_LSN3 CA C SING N N 2 LEU_LSN3 CA CB SING N N 3 LEU_LSN3 CA HA SING N N 4 LEU_LSN3 C O DOUB N N 5 LEU_LSN3 CB CG SING N N 6 LEU_LSN3 CB HB2 SING N N 7 LEU_LSN3 CB HB3 SING N N 8 LEU_LSN3 CG CD1 SING N N 9 LEU_LSN3 CG CD2 SING N N 10 LEU_LSN3 CG HG SING N N 11 LEU_LSN3 CD1 HD11 SING N N 12 LEU_LSN3 CD1 HD12 SING N N 13 LEU_LSN3 CD1 HD13 SING N N 14 LEU_LSN3 CD2 HD21 SING N N 15 LEU_LSN3 CD2 HD22 SING N N 16 LEU_LSN3 CD2 HD23 SING N N 17 LEU_LSN3 H1 N SING N N 18 LEU_LSN3 H2 N SING N N 19 LEU_LSN3 H3 N SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LEU_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CC(C)C LEU_LSN3 InChI InChI 1.01 InChI=1/C6H12NO/c1-5(2)3-6(7)4-8/h5-6H,3,7H2,1-2H3/q-1/p+1/t6-/m0/s1 LEU_LSN3 SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H]([NH3+])[C-]=O LEU_LSN3 SMILES CACTVS 3.341 CC(C)C[CH]([NH3+])[C-]=O LEU_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@@H]([C-]=O)[NH3+] LEU_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LEU_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-4-methyl-1-oxopentan-1-ide LEU_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-methyl-1-oxo-pentan-2-yl]azanium # # data_LYS_LEO2 # _chem_comp.id LYS_LEO2 _chem_comp.name "L-LYSINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 145.180 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LEO2 N N N -1 1 N N N 37.577 40.385 -3.968 1.482 1.770 0.127 1 LYS_LEO2 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.431 0.346 0.483 2 LYS_LEO2 C C C 0 1 N N N 38.094 38.304 -5.212 2.686 -0.337 0.004 3 LYS_LEO2 O O O 0 1 N N N 36.873 38.235 -5.490 2.930 -1.479 0.355 4 LYS_LEO2 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.214 -0.302 -0.181 5 LYS_LEO2 CG CG C 0 1 N N N 38.523 38.111 -2.181 -1.066 0.307 0.397 6 LYS_LEO2 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.283 -0.341 -0.266 7 LYS_LEO2 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.563 0.267 0.312 8 LYS_LEO2 NZ NZ N 1 1 N N N 37.176 36.546 -0.539 -4.731 -0.354 -0.324 9 LYS_LEO2 OXT OXT O -1 1 N Y N 38.961 37.678 -5.886 3.458 0.252 -0.733 10 LYS_LEO2 H H H 0 1 N N N 37.661 40.597 -2.994 1.556 1.891 -0.872 11 LYS_LEO2 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.352 0.245 1.565 12 LYS_LEO2 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.247 -0.123 -1.255 13 LYS_LEO2 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.224 -1.375 0.010 14 LYS_LEO2 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -1.100 0.128 1.472 15 LYS_LEO2 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -1.076 1.380 0.207 16 LYS_LEO2 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.249 -0.162 -1.340 17 LYS_LEO2 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.273 -1.414 -0.075 18 LYS_LEO2 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.596 0.089 1.387 19 LYS_LEO2 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.573 1.340 0.122 20 LYS_LEO2 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -4.700 -0.189 -1.319 21 LYS_LEO2 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.722 -1.348 -0.148 22 LYS_LEO2 HZ3 3HZ H 0 1 N N N 36.329 36.030 -0.408 -5.575 0.047 0.057 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LEO2 N CA SING N N 1 LYS_LEO2 N H SING N N 2 LYS_LEO2 CA C SING N N 3 LYS_LEO2 CA CB SING N N 4 LYS_LEO2 CA HA SING N N 5 LYS_LEO2 C O DOUB N N 6 LYS_LEO2 C OXT SING N N 7 LYS_LEO2 CB CG SING N N 8 LYS_LEO2 CB HB2 SING N N 9 LYS_LEO2 CB HB3 SING N N 10 LYS_LEO2 CG CD SING N N 11 LYS_LEO2 CG HG2 SING N N 12 LYS_LEO2 CG HG3 SING N N 13 LYS_LEO2 CD CE SING N N 14 LYS_LEO2 CD HD2 SING N N 15 LYS_LEO2 CD HD3 SING N N 16 LYS_LEO2 CE NZ SING N N 17 LYS_LEO2 CE HE2 SING N N 18 LYS_LEO2 CE HE3 SING N N 19 LYS_LEO2 NZ HZ1 SING N N 20 LYS_LEO2 NZ HZ2 SING N N 21 LYS_LEO2 NZ HZ3 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCC[NH3+] LYS_LEO2 InChI InChI 1.01 InChI=1/C6H13N2O2/c7-4-2-1-3-5(8)6(9)10/h5,8H,1-4,7H2,(H,9,10)/q-1/t5-/m0/s1 LYS_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH3+]CCCC[C@H]([NH-])C([O-])=O LYS_LEO2 SMILES CACTVS 3.341 [NH3+]CCCC[CH]([NH-])C([O-])=O LYS_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])C[C@@H](C(=O)[O-])[NH-] LYS_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-6-ammonio-2-azanidylhexanoate LYS_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-6-azaniumyl-hexanoate # # data_LYS_LEO2_DHZ3 # _chem_comp.id LYS_LEO2_DHZ3 _chem_comp.name "L-LYSINE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NZ" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 144.172 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LEO2_DHZ3 N N N -1 1 N N N 37.577 40.385 -3.968 1.448 1.770 0.130 1 LYS_LEO2_DHZ3 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.395 0.345 0.482 2 LYS_LEO2_DHZ3 C C C 0 1 N N N 38.094 38.304 -5.212 2.654 -0.336 0.009 3 LYS_LEO2_DHZ3 O O O 0 1 N N N 36.873 38.235 -5.490 2.897 -1.479 0.359 4 LYS_LEO2_DHZ3 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.182 -0.302 -0.189 5 LYS_LEO2_DHZ3 CG CG C 0 1 N N N 38.523 38.111 -2.181 -1.101 0.304 0.384 6 LYS_LEO2_DHZ3 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.314 -0.343 -0.288 7 LYS_LEO2_DHZ3 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.597 0.263 0.285 8 LYS_LEO2_DHZ3 NZ NZ N 0 1 N N N 37.176 36.546 -0.539 -4.762 -0.359 -0.360 9 LYS_LEO2_DHZ3 OXT OXT O -1 1 N Y N 38.961 37.678 -5.886 3.429 0.255 -0.723 10 LYS_LEO2_DHZ3 H H H 0 1 N N N 37.661 40.597 -2.994 1.526 1.893 -0.868 11 LYS_LEO2_DHZ3 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.310 0.241 1.564 12 LYS_LEO2_DHZ3 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.221 -0.121 -1.263 13 LYS_LEO2_DHZ3 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.192 -1.376 -0.001 14 LYS_LEO2_DHZ3 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -1.141 0.123 1.458 15 LYS_LEO2_DHZ3 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -1.111 1.377 0.195 16 LYS_LEO2_DHZ3 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.275 -0.162 -1.362 17 LYS_LEO2_DHZ3 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.304 -1.417 -0.099 18 LYS_LEO2_DHZ3 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.637 0.082 1.359 19 LYS_LEO2_DHZ3 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.608 1.336 0.096 20 LYS_LEO2_DHZ3 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -4.741 -1.362 -0.255 21 LYS_LEO2_DHZ3 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -5.622 0.025 0.002 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LEO2_DHZ3 N CA SING N N 1 LYS_LEO2_DHZ3 N H SING N N 2 LYS_LEO2_DHZ3 CA C SING N N 3 LYS_LEO2_DHZ3 CA CB SING N N 4 LYS_LEO2_DHZ3 CA HA SING N N 5 LYS_LEO2_DHZ3 C O DOUB N N 6 LYS_LEO2_DHZ3 C OXT SING N N 7 LYS_LEO2_DHZ3 CB CG SING N N 8 LYS_LEO2_DHZ3 CB HB2 SING N N 9 LYS_LEO2_DHZ3 CB HB3 SING N N 10 LYS_LEO2_DHZ3 CG CD SING N N 11 LYS_LEO2_DHZ3 CG HG2 SING N N 12 LYS_LEO2_DHZ3 CG HG3 SING N N 13 LYS_LEO2_DHZ3 CD CE SING N N 14 LYS_LEO2_DHZ3 CD HD2 SING N N 15 LYS_LEO2_DHZ3 CD HD3 SING N N 16 LYS_LEO2_DHZ3 CE NZ SING N N 17 LYS_LEO2_DHZ3 CE HE2 SING N N 18 LYS_LEO2_DHZ3 CE HE3 SING N N 19 LYS_LEO2_DHZ3 NZ HZ1 SING N N 20 LYS_LEO2_DHZ3 NZ HZ2 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LEO2_DHZ3 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCCN LYS_LEO2_DHZ3 InChI InChI 1.01 InChI=1/C6H13N2O2/c7-4-2-1-3-5(8)6(9)10/h5,8H,1-4,7H2,(H,9,10)/q-1/p-1/t5-/m0/s1 LYS_LEO2_DHZ3 SMILES_CANONICAL CACTVS 3.341 NCCCC[C@H]([NH-])C([O-])=O LYS_LEO2_DHZ3 SMILES CACTVS 3.341 NCCCC[CH]([NH-])C([O-])=O LYS_LEO2_DHZ3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CCN)C[C@@H](C(=O)[O-])[NH-] LYS_LEO2_DHZ3 SMILES "OpenEye OEToolkits" 1.5.0 C(CCN)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LEO2_DHZ3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-6-amino-2-azanidylhexanoate LYS_LEO2_DHZ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-6-amino-2-azanidyl-hexanoate # # data_LYS_LEO2H # _chem_comp.id LYS_LEO2H _chem_comp.name "L-LYSINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.188 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LEO2H N N N -1 1 N N N 37.577 40.385 -3.968 1.424 1.808 0.228 1 LYS_LEO2H CA CA C 0 1 N N S 38.631 39.459 -4.356 1.397 0.363 0.493 2 LYS_LEO2H C C C 0 1 N N N 38.094 38.304 -5.212 2.661 -0.268 -0.032 3 LYS_LEO2H O O O 0 1 N N N 36.873 38.235 -5.490 3.320 0.305 -0.868 4 LYS_LEO2H CB CB C 0 1 N N N 39.374 38.919 -3.139 0.187 -0.261 -0.206 5 LYS_LEO2H CG CG C 0 1 N N N 38.523 38.111 -2.181 -1.099 0.289 0.414 6 LYS_LEO2H CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.309 -0.335 -0.285 7 LYS_LEO2H CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.595 0.214 0.335 8 LYS_LEO2H NZ NZ N 1 1 N N N 37.176 36.546 -0.539 -4.757 -0.385 -0.336 9 LYS_LEO2H OXT OXT O 0 1 N Y N 38.961 37.678 -5.886 3.055 -1.465 0.429 10 LYS_LEO2H H H H 0 1 N N N 37.661 40.597 -2.994 1.491 1.993 -0.762 11 LYS_LEO2H HA HA H 0 1 N N N 39.343 40.030 -4.971 1.324 0.192 1.567 12 LYS_LEO2H HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.214 -0.014 -1.267 13 LYS_LEO2H HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.216 -1.343 -0.084 14 LYS_LEO2H HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -1.125 0.042 1.475 15 LYS_LEO2H HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -1.128 1.372 0.292 16 LYS_LEO2H HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.283 -0.088 -1.346 17 LYS_LEO2H HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.280 -1.418 -0.163 18 LYS_LEO2H HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.621 -0.032 1.396 19 LYS_LEO2H HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.624 1.297 0.213 20 LYS_LEO2H HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -4.732 -0.156 -1.319 21 LYS_LEO2H HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.730 -1.387 -0.223 22 LYS_LEO2H HZ3 3HZ H 0 1 N N N 36.329 36.030 -0.408 -5.605 -0.022 0.073 23 LYS_LEO2H HXT HXT H 0 1 N Y N 38.532 37.192 -6.580 3.872 -1.830 0.062 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LEO2H N CA SING N N 1 LYS_LEO2H N H SING N N 2 LYS_LEO2H CA C SING N N 3 LYS_LEO2H CA CB SING N N 4 LYS_LEO2H CA HA SING N N 5 LYS_LEO2H C O DOUB N N 6 LYS_LEO2H C OXT SING N N 7 LYS_LEO2H CB CG SING N N 8 LYS_LEO2H CB HB2 SING N N 9 LYS_LEO2H CB HB3 SING N N 10 LYS_LEO2H CG CD SING N N 11 LYS_LEO2H CG HG2 SING N N 12 LYS_LEO2H CG HG3 SING N N 13 LYS_LEO2H CD CE SING N N 14 LYS_LEO2H CD HD2 SING N N 15 LYS_LEO2H CD HD3 SING N N 16 LYS_LEO2H CE NZ SING N N 17 LYS_LEO2H CE HE2 SING N N 18 LYS_LEO2H CE HE3 SING N N 19 LYS_LEO2H NZ HZ1 SING N N 20 LYS_LEO2H NZ HZ2 SING N N 21 LYS_LEO2H NZ HZ3 SING N N 22 LYS_LEO2H OXT HXT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCC[NH3+] LYS_LEO2H InChI InChI 1.01 InChI=1/C6H13N2O2/c7-4-2-1-3-5(8)6(9)10/h5,8H,1-4,7H2,(H,9,10)/q-1/p+1/t5-/m0/s1 LYS_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH3+]CCCC[C@H]([NH-])C(O)=O LYS_LEO2H SMILES CACTVS 3.341 [NH3+]CCCC[CH]([NH-])C(O)=O LYS_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])C[C@@H](C(=O)O)[NH-] LYS_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-5-ammonio-1-carboxypentyl]azanide LYS_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-6-azaniumyl-1-hydroxy-1-oxo-hexan-2-yl]azanide # # data_LYS_LEO2H_DHZ3 # _chem_comp.id LYS_LEO2H_DHZ3 _chem_comp.name "L-LYSINE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NZ" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 145.180 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LEO2H_DHZ3 N N N -1 1 N N N 37.577 40.385 -3.968 1.389 1.808 0.230 1 LYS_LEO2H_DHZ3 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.361 0.362 0.492 2 LYS_LEO2H_DHZ3 C C C 0 1 N N N 38.094 38.304 -5.212 2.628 -0.267 -0.027 3 LYS_LEO2H_DHZ3 O O O 0 1 N N N 36.873 38.235 -5.490 3.292 0.307 -0.858 4 LYS_LEO2H_DHZ3 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.156 -0.261 -0.214 5 LYS_LEO2H_DHZ3 CG CG C 0 1 N N N 38.523 38.111 -2.181 -1.134 0.287 0.400 6 LYS_LEO2H_DHZ3 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.340 -0.337 -0.307 7 LYS_LEO2H_DHZ3 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.630 0.211 0.307 8 LYS_LEO2H_DHZ3 NZ NZ N 0 1 N N N 37.176 36.546 -0.539 -4.787 -0.388 -0.371 9 LYS_LEO2H_DHZ3 OXT OXT O 0 1 N Y N 38.961 37.678 -5.886 3.021 -1.465 0.434 10 LYS_LEO2H_DHZ3 H H H 0 1 N N N 37.661 40.597 -2.994 1.461 1.994 -0.759 11 LYS_LEO2H_DHZ3 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.283 0.190 1.566 12 LYS_LEO2H_DHZ3 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.188 -0.013 -1.275 13 LYS_LEO2H_DHZ3 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.184 -1.344 -0.094 14 LYS_LEO2H_DHZ3 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -1.166 0.038 1.460 15 LYS_LEO2H_DHZ3 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -1.163 1.370 0.279 16 LYS_LEO2H_DHZ3 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.308 -0.089 -1.367 17 LYS_LEO2H_DHZ3 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.311 -1.420 -0.186 18 LYS_LEO2H_DHZ3 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.662 -0.038 1.368 19 LYS_LEO2H_DHZ3 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.658 1.293 0.186 20 LYS_LEO2H_DHZ3 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -4.750 -1.396 -0.329 21 LYS_LEO2H_DHZ3 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -5.652 -0.042 0.016 22 LYS_LEO2H_DHZ3 HXT HXT H 0 1 N Y N 38.532 37.192 -6.580 3.840 -1.828 0.072 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LEO2H_DHZ3 N CA SING N N 1 LYS_LEO2H_DHZ3 N H SING N N 2 LYS_LEO2H_DHZ3 CA C SING N N 3 LYS_LEO2H_DHZ3 CA CB SING N N 4 LYS_LEO2H_DHZ3 CA HA SING N N 5 LYS_LEO2H_DHZ3 C O DOUB N N 6 LYS_LEO2H_DHZ3 C OXT SING N N 7 LYS_LEO2H_DHZ3 CB CG SING N N 8 LYS_LEO2H_DHZ3 CB HB2 SING N N 9 LYS_LEO2H_DHZ3 CB HB3 SING N N 10 LYS_LEO2H_DHZ3 CG CD SING N N 11 LYS_LEO2H_DHZ3 CG HG2 SING N N 12 LYS_LEO2H_DHZ3 CG HG3 SING N N 13 LYS_LEO2H_DHZ3 CD CE SING N N 14 LYS_LEO2H_DHZ3 CD HD2 SING N N 15 LYS_LEO2H_DHZ3 CD HD3 SING N N 16 LYS_LEO2H_DHZ3 CE NZ SING N N 17 LYS_LEO2H_DHZ3 CE HE2 SING N N 18 LYS_LEO2H_DHZ3 CE HE3 SING N N 19 LYS_LEO2H_DHZ3 NZ HZ1 SING N N 20 LYS_LEO2H_DHZ3 NZ HZ2 SING N N 21 LYS_LEO2H_DHZ3 OXT HXT SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LEO2H_DHZ3 SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCCN LYS_LEO2H_DHZ3 InChI InChI 1.01 InChI=1/C6H13N2O2/c7-4-2-1-3-5(8)6(9)10/h5,8H,1-4,7H2,(H,9,10)/q-1/t5-/m0/s1 LYS_LEO2H_DHZ3 SMILES_CANONICAL CACTVS 3.341 NCCCC[C@H]([NH-])C(O)=O LYS_LEO2H_DHZ3 SMILES CACTVS 3.341 NCCCC[CH]([NH-])C(O)=O LYS_LEO2H_DHZ3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CCN)C[C@@H](C(=O)O)[NH-] LYS_LEO2H_DHZ3 SMILES "OpenEye OEToolkits" 1.5.0 C(CCN)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LEO2H_DHZ3 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-5-amino-1-carboxypentyl]azanide LYS_LEO2H_DHZ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-6-amino-1-hydroxy-1-oxo-hexan-2-yl]azanide # # data_LYS_LFOH # _chem_comp.id LYS_LFOH _chem_comp.name "L-LYSINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.195 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LFOH N N N 0 1 N N N 37.577 40.385 -3.968 1.418 1.790 0.181 1 LYS_LFOH CA CA C 0 1 N N S 38.631 39.459 -4.356 1.385 0.352 0.478 2 LYS_LFOH C C C 0 1 N N N 38.094 38.304 -5.212 2.645 -0.296 -0.034 3 LYS_LFOH O O O 0 1 N N N 36.873 38.235 -5.490 3.305 0.254 -0.883 4 LYS_LFOH CB CB C 0 1 N N N 39.374 38.919 -3.139 0.171 -0.282 -0.205 5 LYS_LFOH CG CG C 0 1 N N N 38.523 38.111 -2.181 -1.112 0.288 0.404 6 LYS_LFOH CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.326 -0.346 -0.279 7 LYS_LFOH CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.609 0.223 0.330 8 LYS_LFOH NZ NZ N 1 1 N N N 37.176 36.546 -0.539 -4.774 -0.385 -0.326 9 LYS_LFOH OXT OXT O 0 1 N Y N 38.961 37.678 -5.886 3.033 -1.485 0.453 10 LYS_LFOH HA HA H 0 1 N N N 39.343 40.030 -4.971 1.313 0.205 1.556 11 LYS_LFOH HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.197 -0.059 -1.272 12 LYS_LFOH HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.194 -1.362 -0.059 13 LYS_LFOH HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -1.138 0.065 1.471 14 LYS_LFOH HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -1.136 1.368 0.258 15 LYS_LFOH HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.300 -0.123 -1.346 16 LYS_LFOH HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.302 -1.426 -0.133 17 LYS_LFOH HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.635 0.001 1.397 18 LYS_LFOH HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.632 1.303 0.184 19 LYS_LFOH HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -5.620 -0.010 0.076 20 LYS_LFOH HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.750 -0.179 -1.313 21 LYS_LFOH HZ3 3HZ H 0 1 N N N 36.329 36.030 -0.408 -4.752 -1.385 -0.190 22 LYS_LFOH HXT HXT H 0 1 N Y N 38.532 37.192 -6.580 3.849 -1.862 0.093 23 LYS_LFOH H1 H1 H 0 1 N N N 37.661 40.597 -2.994 2.174 2.244 0.673 24 LYS_LFOH H2 H2 H 0 1 N N N 37.660 41.227 -4.501 1.485 1.953 -0.813 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LFOH N CA SING N N 1 LYS_LFOH CA C SING N N 2 LYS_LFOH CA CB SING N N 3 LYS_LFOH CA HA SING N N 4 LYS_LFOH C O DOUB N N 5 LYS_LFOH C OXT SING N N 6 LYS_LFOH CB CG SING N N 7 LYS_LFOH CB HB2 SING N N 8 LYS_LFOH CB HB3 SING N N 9 LYS_LFOH CG CD SING N N 10 LYS_LFOH CG HG2 SING N N 11 LYS_LFOH CG HG3 SING N N 12 LYS_LFOH CD CE SING N N 13 LYS_LFOH CD HD2 SING N N 14 LYS_LFOH CD HD3 SING N N 15 LYS_LFOH CE NZ SING N N 16 LYS_LFOH CE HE2 SING N N 17 LYS_LFOH CE HE3 SING N N 18 LYS_LFOH NZ HZ1 SING N N 19 LYS_LFOH NZ HZ2 SING N N 20 LYS_LFOH NZ HZ3 SING N N 21 LYS_LFOH OXT HXT SING N N 22 LYS_LFOH H1 N SING N N 23 LYS_LFOH H2 N SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)CCCC[NH3+] LYS_LFOH InChI InChI 1.01 InChI=1/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1/t5-/m0/s1 LYS_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCC[NH3+])C(O)=O LYS_LFOH SMILES CACTVS 3.341 N[CH](CCCC[NH3+])C(O)=O LYS_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])C[C@@H](C(=O)O)N LYS_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 6-ammonio-L-norleucine LYS_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(5S)-5-amino-6-hydroxy-6-oxo-hexyl]azanium # # data_LYS_LFOH_DHZ3 # _chem_comp.id LYS_LFOH_DHZ3 _chem_comp.name "L-LYSINE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED NZ" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.188 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LFOH_DHZ3 N N N 0 1 N N N 37.577 40.385 -3.968 1.379 1.793 0.193 1 LYS_LFOH_DHZ3 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.358 0.353 0.482 2 LYS_LFOH_DHZ3 C C C 0 1 N N N 38.094 38.304 -5.212 2.625 -0.280 -0.032 3 LYS_LFOH_DHZ3 O O O 0 1 N N N 36.873 38.235 -5.490 3.282 0.281 -0.877 4 LYS_LFOH_DHZ3 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.152 -0.288 -0.207 5 LYS_LFOH_DHZ3 CG CG C 0 1 N N N 38.523 38.111 -2.181 -1.137 0.266 0.403 6 LYS_LFOH_DHZ3 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.344 -0.376 -0.286 7 LYS_LFOH_DHZ3 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.633 0.178 0.324 8 LYS_LFOH_DHZ3 NZ NZ N 0 1 N N N 37.176 36.546 -0.539 -4.791 -0.438 -0.337 9 LYS_LFOH_DHZ3 OXT OXT O 0 1 N Y N 38.961 37.678 -5.886 3.025 -1.468 0.449 10 LYS_LFOH_DHZ3 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.286 0.200 1.559 11 LYS_LFOH_DHZ3 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.178 -0.059 -1.272 12 LYS_LFOH_DHZ3 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.186 -1.368 -0.067 13 LYS_LFOH_DHZ3 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -1.163 0.036 1.469 14 LYS_LFOH_DHZ3 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -1.171 1.346 0.263 15 LYS_LFOH_DHZ3 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.318 -0.147 -1.351 16 LYS_LFOH_DHZ3 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.310 -1.456 -0.146 17 LYS_LFOH_DHZ3 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.659 -0.052 1.390 18 LYS_LFOH_DHZ3 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.667 1.258 0.184 19 LYS_LFOH_DHZ3 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -5.656 -0.089 0.049 20 LYS_LFOH_DHZ3 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.756 -0.295 -1.335 21 LYS_LFOH_DHZ3 HXT HXT H 0 1 N Y N 38.532 37.192 -6.580 3.844 -1.834 0.089 22 LYS_LFOH_DHZ3 H1 H1 H 0 1 N N N 37.661 40.597 -2.994 1.445 1.962 -0.799 23 LYS_LFOH_DHZ3 H2 H2 H 0 1 N N N 37.660 41.227 -4.501 0.570 2.252 0.584 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LFOH_DHZ3 N CA SING N N 1 LYS_LFOH_DHZ3 CA C SING N N 2 LYS_LFOH_DHZ3 CA CB SING N N 3 LYS_LFOH_DHZ3 CA HA SING N N 4 LYS_LFOH_DHZ3 C O DOUB N N 5 LYS_LFOH_DHZ3 C OXT SING N N 6 LYS_LFOH_DHZ3 CB CG SING N N 7 LYS_LFOH_DHZ3 CB HB2 SING N N 8 LYS_LFOH_DHZ3 CB HB3 SING N N 9 LYS_LFOH_DHZ3 CG CD SING N N 10 LYS_LFOH_DHZ3 CG HG2 SING N N 11 LYS_LFOH_DHZ3 CG HG3 SING N N 12 LYS_LFOH_DHZ3 CD CE SING N N 13 LYS_LFOH_DHZ3 CD HD2 SING N N 14 LYS_LFOH_DHZ3 CD HD3 SING N N 15 LYS_LFOH_DHZ3 CE NZ SING N N 16 LYS_LFOH_DHZ3 CE HE2 SING N N 17 LYS_LFOH_DHZ3 CE HE3 SING N N 18 LYS_LFOH_DHZ3 NZ HZ1 SING N N 19 LYS_LFOH_DHZ3 NZ HZ2 SING N N 20 LYS_LFOH_DHZ3 OXT HXT SING N N 21 LYS_LFOH_DHZ3 H1 N SING N N 22 LYS_LFOH_DHZ3 H2 N SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LFOH_DHZ3 SMILES ACDLabs 10.04 O=C(O)C(N)CCCCN LYS_LFOH_DHZ3 InChI InChI 1.01 InChI=1/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1 LYS_LFOH_DHZ3 SMILES_CANONICAL CACTVS 3.341 NCCCC[C@H](N)C(O)=O LYS_LFOH_DHZ3 SMILES CACTVS 3.341 NCCCC[CH](N)C(O)=O LYS_LFOH_DHZ3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CCN)C[C@@H](C(=O)O)N LYS_LFOH_DHZ3 SMILES "OpenEye OEToolkits" 1.5.0 C(CCN)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LFOH_DHZ3 "SYSTEMATIC NAME" ACDLabs 10.04 L-lysine LYS_LFOH_DHZ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2,6-diaminohexanoic acid" # # data_LYS_LFZW # _chem_comp.id LYS_LFZW _chem_comp.name "L-LYSINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.195 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LFZW N N N 1 1 N N N 37.577 40.385 -3.968 -1.473 1.734 -0.069 1 LYS_LFZW CA CA C 0 1 N N S 38.631 39.459 -4.356 -1.413 0.320 -0.465 2 LYS_LFZW C C C 0 1 N N N 38.094 38.304 -5.212 -2.664 -0.384 -0.004 3 LYS_LFZW O O O 0 1 N N N 36.873 38.235 -5.490 -2.901 -1.517 -0.387 4 LYS_LFZW CB CB C 0 1 N N N 39.374 38.919 -3.139 -0.191 -0.338 0.178 5 LYS_LFZW CG CG C 0 1 N N N 38.523 38.111 -2.181 1.084 0.294 -0.384 6 LYS_LFZW CD CD C 0 1 N N N 39.164 36.749 -1.903 2.306 -0.364 0.259 7 LYS_LFZW CE CE C 0 1 N N N 38.106 35.761 -1.382 3.581 0.268 -0.303 8 LYS_LFZW NZ NZ N 1 1 N N N 37.176 36.546 -0.539 4.754 -0.364 0.314 9 LYS_LFZW OXT OXT O -1 1 N Y N 38.961 37.678 -5.886 -3.438 0.180 0.750 10 LYS_LFZW HA HA H 0 1 N N N 39.343 40.030 -4.971 -1.335 0.250 -1.550 11 LYS_LFZW HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 -0.225 -0.190 1.258 12 LYS_LFZW HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 -0.195 -1.406 -0.043 13 LYS_LFZW HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 1.117 0.146 -1.463 14 LYS_LFZW HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 1.088 1.362 -0.163 15 LYS_LFZW HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 2.272 -0.216 1.339 16 LYS_LFZW HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 2.302 -1.432 0.038 17 LYS_LFZW HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 3.614 0.120 -1.383 18 LYS_LFZW HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 3.585 1.335 -0.082 19 LYS_LFZW HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 5.595 0.053 -0.056 20 LYS_LFZW HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 4.723 -0.227 1.314 21 LYS_LFZW HZ3 3HZ H 0 1 N N N 36.329 36.030 -0.408 4.750 -1.352 0.110 22 LYS_LFZW H1 H1 H 0 1 N N N 37.661 40.597 -2.994 -0.636 2.205 -0.377 23 LYS_LFZW H2 H2 H 0 1 N N N 37.660 41.227 -4.501 -2.279 2.168 -0.493 24 LYS_LFZW H3 H3 H 0 1 N N N 36.685 39.967 -4.142 -1.546 1.799 0.935 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LFZW N CA SING N N 1 LYS_LFZW CA C SING N N 2 LYS_LFZW CA CB SING N N 3 LYS_LFZW CA HA SING N N 4 LYS_LFZW C O DOUB N N 5 LYS_LFZW C OXT SING N N 6 LYS_LFZW CB CG SING N N 7 LYS_LFZW CB HB2 SING N N 8 LYS_LFZW CB HB3 SING N N 9 LYS_LFZW CG CD SING N N 10 LYS_LFZW CG HG2 SING N N 11 LYS_LFZW CG HG3 SING N N 12 LYS_LFZW CD CE SING N N 13 LYS_LFZW CD HD2 SING N N 14 LYS_LFZW CD HD3 SING N N 15 LYS_LFZW CE NZ SING N N 16 LYS_LFZW CE HE2 SING N N 17 LYS_LFZW CE HE3 SING N N 18 LYS_LFZW NZ HZ1 SING N N 19 LYS_LFZW NZ HZ2 SING N N 20 LYS_LFZW NZ HZ3 SING N N 21 LYS_LFZW H1 N SING N N 22 LYS_LFZW H2 N SING N N 23 LYS_LFZW H3 N SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C(CCCC[NH3+])[NH3+] LYS_LFZW InChI InChI 1.01 InChI=1/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1/t5-/m0/s1 LYS_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+]CCCC[C@H]([NH3+])C([O-])=O LYS_LFZW SMILES CACTVS 3.341 [NH3+]CCCC[CH]([NH3+])C([O-])=O LYS_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])C[C@@H](C(=O)[O-])[NH3+] LYS_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2,6-diammoniohexanoate LYS_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2,6-diazaniumylhexanoate # # data_LYS_LFZW_DHZ3 # _chem_comp.id LYS_LFZW_DHZ3 _chem_comp.name "L-LYSINE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED NZ" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.188 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LFZW_DHZ3 N N N 1 1 N N N 37.577 40.385 -3.968 1.435 1.731 0.001 1 LYS_LFZW_DHZ3 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.380 0.334 0.452 2 LYS_LFZW_DHZ3 C C C 0 1 N N N 38.094 38.304 -5.212 2.632 -0.384 0.020 3 LYS_LFZW_DHZ3 O O O 0 1 N N N 36.873 38.235 -5.490 3.492 0.213 -0.606 4 LYS_LFZW_DHZ3 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.160 -0.353 -0.165 5 LYS_LFZW_DHZ3 CG CG C 0 1 N N N 38.523 38.111 -2.181 -1.117 0.297 0.372 6 LYS_LFZW_DHZ3 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.337 -0.390 -0.245 7 LYS_LFZW_DHZ3 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.614 0.260 0.292 8 LYS_LFZW_DHZ3 NZ NZ N 0 1 N N N 37.176 36.546 -0.539 -4.786 -0.400 -0.301 9 LYS_LFZW_DHZ3 OXT OXT O -1 1 N Y N 38.961 37.678 -5.886 2.786 -1.561 0.296 10 LYS_LFZW_DHZ3 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.301 0.306 1.539 11 LYS_LFZW_DHZ3 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.193 -0.247 -1.250 12 LYS_LFZW_DHZ3 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.167 -1.411 0.097 13 LYS_LFZW_DHZ3 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -1.151 0.191 1.456 14 LYS_LFZW_DHZ3 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -1.125 1.355 0.109 15 LYS_LFZW_DHZ3 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.304 -0.284 -1.330 16 LYS_LFZW_DHZ3 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.330 -1.448 0.017 17 LYS_LFZW_DHZ3 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.648 0.154 1.376 18 LYS_LFZW_DHZ3 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.622 1.318 0.029 19 LYS_LFZW_DHZ3 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -5.642 0.012 0.038 20 LYS_LFZW_DHZ3 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.745 -0.372 -1.309 21 LYS_LFZW_DHZ3 H1 H1 H 0 1 N N N 37.661 40.597 -2.994 1.508 1.757 -1.005 22 LYS_LFZW_DHZ3 H2 H2 H 0 1 N N N 37.660 41.227 -4.501 0.597 2.211 0.291 23 LYS_LFZW_DHZ3 H3 H3 H 0 1 N N N 36.685 39.967 -4.142 2.240 2.184 0.408 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LFZW_DHZ3 N CA SING N N 1 LYS_LFZW_DHZ3 CA C SING N N 2 LYS_LFZW_DHZ3 CA CB SING N N 3 LYS_LFZW_DHZ3 CA HA SING N N 4 LYS_LFZW_DHZ3 C O DOUB N N 5 LYS_LFZW_DHZ3 C OXT SING N N 6 LYS_LFZW_DHZ3 CB CG SING N N 7 LYS_LFZW_DHZ3 CB HB2 SING N N 8 LYS_LFZW_DHZ3 CB HB3 SING N N 9 LYS_LFZW_DHZ3 CG CD SING N N 10 LYS_LFZW_DHZ3 CG HG2 SING N N 11 LYS_LFZW_DHZ3 CG HG3 SING N N 12 LYS_LFZW_DHZ3 CD CE SING N N 13 LYS_LFZW_DHZ3 CD HD2 SING N N 14 LYS_LFZW_DHZ3 CD HD3 SING N N 15 LYS_LFZW_DHZ3 CE NZ SING N N 16 LYS_LFZW_DHZ3 CE HE2 SING N N 17 LYS_LFZW_DHZ3 CE HE3 SING N N 18 LYS_LFZW_DHZ3 NZ HZ1 SING N N 19 LYS_LFZW_DHZ3 NZ HZ2 SING N N 20 LYS_LFZW_DHZ3 H1 N SING N N 21 LYS_LFZW_DHZ3 H2 N SING N N 22 LYS_LFZW_DHZ3 H3 N SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LFZW_DHZ3 SMILES ACDLabs 10.04 [O-]C(=O)C(CCCCN)[NH3+] LYS_LFZW_DHZ3 InChI InChI 1.01 InChI=1/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1 LYS_LFZW_DHZ3 SMILES_CANONICAL CACTVS 3.341 NCCCC[C@H]([NH3+])C([O-])=O LYS_LFZW_DHZ3 SMILES CACTVS 3.341 NCCCC[CH]([NH3+])C([O-])=O LYS_LFZW_DHZ3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CCN)C[C@@H](C(=O)[O-])[NH3+] LYS_LFZW_DHZ3 SMILES "OpenEye OEToolkits" 1.5.0 C(CCN)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LFZW_DHZ3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-6-amino-2-ammoniohexanoate LYS_LFZW_DHZ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-6-amino-2-azaniumyl-hexanoate # # data_LYS_LL # _chem_comp.id LYS_LL _chem_comp.name "L-LYSINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N2 O" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.180 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LL N N N -1 1 N N N 37.577 40.385 -3.968 1.910 1.464 -0.296 1 LYS_LL CA CA C 0 1 N N S 38.631 39.459 -4.356 1.783 0.117 0.276 2 LYS_LL C C C -1 1 N N N 38.094 38.304 -5.212 2.963 -0.721 -0.144 3 LYS_LL O O O 0 1 N N N 36.873 38.235 -5.490 4.082 -0.381 0.155 4 LYS_LL CB CB C 0 1 N N N 39.374 38.919 -3.139 0.491 -0.532 -0.227 5 LYS_LL CG CG C 0 1 N N N 38.523 38.111 -2.181 -0.712 0.249 0.304 6 LYS_LL CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.003 -0.400 -0.199 7 LYS_LL CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.207 0.381 0.332 8 LYS_LL NZ NZ N 1 1 N N N 37.176 36.546 -0.539 -4.447 -0.241 -0.152 9 LYS_LL H H H 0 1 N N N 37.661 40.597 -2.994 1.938 1.427 -1.304 10 LYS_LL HA HA H 0 1 N N N 39.343 40.030 -4.971 1.755 0.185 1.364 11 LYS_LL HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.480 -0.520 -1.317 12 LYS_LL HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.441 -1.562 0.125 13 LYS_LL HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -0.701 0.237 1.394 14 LYS_LL HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -0.661 1.279 -0.049 15 LYS_LL HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.015 -0.388 -1.289 16 LYS_LL HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.054 -1.430 0.153 17 LYS_LL HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.195 0.369 1.422 18 LYS_LL HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.156 1.411 -0.021 19 LYS_LL HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -4.494 -1.195 0.175 20 LYS_LL HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -5.240 0.274 0.199 21 LYS_LL HZ3 3HZ H 0 1 N N N 36.329 36.030 -0.408 -4.457 -0.230 -1.160 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LL N CA SING N N 1 LYS_LL N H SING N N 2 LYS_LL CA C SING N N 3 LYS_LL CA CB SING N N 4 LYS_LL CA HA SING N N 5 LYS_LL C O DOUB N N 6 LYS_LL CB CG SING N N 7 LYS_LL CB HB2 SING N N 8 LYS_LL CB HB3 SING N N 9 LYS_LL CG CD SING N N 10 LYS_LL CG HG2 SING N N 11 LYS_LL CG HG3 SING N N 12 LYS_LL CD CE SING N N 13 LYS_LL CD HD2 SING N N 14 LYS_LL CD HD3 SING N N 15 LYS_LL CE NZ SING N N 16 LYS_LL CE HE2 SING N N 17 LYS_LL CE HE3 SING N N 18 LYS_LL NZ HZ1 SING N N 19 LYS_LL NZ HZ2 SING N N 20 LYS_LL NZ HZ3 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CCCC[NH3+] LYS_LL InChI InChI 1.01 InChI=1/C6H12N2O/c7-4-2-1-3-6(8)5-9/h6,8H,1-4,7H2/q-2/p+1/t6-/m0/s1 LYS_LL SMILES_CANONICAL CACTVS 3.341 [NH3+]CCCC[C@H]([NH-])[C-]=O LYS_LL SMILES CACTVS 3.341 [NH3+]CCCC[CH]([NH-])[C-]=O LYS_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])C[C@@H]([C-]=O)[NH-] LYS_LL SMILES "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(4-ammoniobutyl)-2-oxoethan-2-idyl]azanide LYS_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-6-azaniumyl-1-oxo-hexan-2-yl]azanide # # data_LYS_LL_DHZ3 # _chem_comp.id LYS_LL_DHZ3 _chem_comp.name "L-LYSINE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NZ" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N2 O" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 128.172 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LL_DHZ3 N N N -1 1 N N N 37.577 40.385 -3.968 1.866 1.462 -0.307 1 LYS_LL_DHZ3 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.747 0.119 0.275 2 LYS_LL_DHZ3 C C C -1 1 N N N 38.094 38.304 -5.212 2.931 -0.715 -0.140 3 LYS_LL_DHZ3 O O O 0 1 N N N 36.873 38.235 -5.490 4.049 -0.367 0.156 4 LYS_LL_DHZ3 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.459 -0.540 -0.222 5 LYS_LL_DHZ3 CG CG C 0 1 N N N 38.523 38.111 -2.181 -0.748 0.238 0.304 6 LYS_LL_DHZ3 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.036 -0.421 -0.193 7 LYS_LL_DHZ3 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.244 0.358 0.333 8 LYS_LL_DHZ3 NZ NZ N 0 1 N N N 37.176 36.546 -0.539 -4.481 -0.275 -0.144 9 LYS_LL_DHZ3 H H H 0 1 N N N 37.661 40.597 -2.994 1.894 1.418 -1.315 10 LYS_LL_DHZ3 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.720 0.196 1.362 11 LYS_LL_DHZ3 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.446 -0.536 -1.312 12 LYS_LL_DHZ3 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.414 -1.567 0.138 13 LYS_LL_DHZ3 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -0.736 0.235 1.394 14 LYS_LL_DHZ3 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -0.704 1.266 -0.056 15 LYS_LL_DHZ3 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.049 -0.417 -1.283 16 LYS_LL_DHZ3 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.081 -1.448 0.167 17 LYS_LL_DHZ3 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.231 0.354 1.423 18 LYS_LL_DHZ3 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.199 1.385 -0.027 19 LYS_LL_DHZ3 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -5.293 0.221 0.191 20 LYS_LL_DHZ3 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.487 -0.342 -1.151 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LL_DHZ3 N CA SING N N 1 LYS_LL_DHZ3 N H SING N N 2 LYS_LL_DHZ3 CA C SING N N 3 LYS_LL_DHZ3 CA CB SING N N 4 LYS_LL_DHZ3 CA HA SING N N 5 LYS_LL_DHZ3 C O DOUB N N 6 LYS_LL_DHZ3 CB CG SING N N 7 LYS_LL_DHZ3 CB HB2 SING N N 8 LYS_LL_DHZ3 CB HB3 SING N N 9 LYS_LL_DHZ3 CG CD SING N N 10 LYS_LL_DHZ3 CG HG2 SING N N 11 LYS_LL_DHZ3 CG HG3 SING N N 12 LYS_LL_DHZ3 CD CE SING N N 13 LYS_LL_DHZ3 CD HD2 SING N N 14 LYS_LL_DHZ3 CD HD3 SING N N 15 LYS_LL_DHZ3 CE NZ SING N N 16 LYS_LL_DHZ3 CE HE2 SING N N 17 LYS_LL_DHZ3 CE HE3 SING N N 18 LYS_LL_DHZ3 NZ HZ1 SING N N 19 LYS_LL_DHZ3 NZ HZ2 SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LL_DHZ3 SMILES ACDLabs 10.04 O=[C-]C([NH-])CCCCN LYS_LL_DHZ3 InChI InChI 1.01 InChI=1/C6H12N2O/c7-4-2-1-3-6(8)5-9/h6,8H,1-4,7H2/q-2/t6-/m0/s1 LYS_LL_DHZ3 SMILES_CANONICAL CACTVS 3.341 NCCCC[C@H]([NH-])[C-]=O LYS_LL_DHZ3 SMILES CACTVS 3.341 NCCCC[CH]([NH-])[C-]=O LYS_LL_DHZ3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CCN)C[C@@H]([C-]=O)[NH-] LYS_LL_DHZ3 SMILES "OpenEye OEToolkits" 1.5.0 C(CCN)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LL_DHZ3 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(4-aminobutyl)-2-oxoethan-2-idyl]azanide LYS_LL_DHZ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-6-amino-1-oxo-hexan-2-yl]azanide # # data_LYS_LSN3 # _chem_comp.id LYS_LSN3 _chem_comp.name "L-LYSINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N2 O" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.196 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LSN3 N N N 1 1 N N N 37.577 40.385 -3.968 1.891 1.419 -0.299 1 LYS_LSN3 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.753 0.074 0.276 2 LYS_LSN3 C C C -1 1 N N N 38.094 38.304 -5.212 2.927 -0.774 -0.144 3 LYS_LSN3 O O O 0 1 N N N 36.873 38.235 -5.490 4.049 -0.442 0.156 4 LYS_LSN3 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.457 -0.566 -0.227 5 LYS_LSN3 CG CG C 0 1 N N N 38.523 38.111 -2.181 -0.740 0.225 0.304 6 LYS_LSN3 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.036 -0.414 -0.199 7 LYS_LSN3 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.234 0.377 0.331 8 LYS_LSN3 NZ NZ N 1 1 N N N 37.176 36.546 -0.539 -4.478 -0.237 -0.151 9 LYS_LSN3 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.726 0.144 1.363 10 LYS_LSN3 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.446 -0.555 -1.316 11 LYS_LSN3 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.399 -1.595 0.128 12 LYS_LSN3 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -0.729 0.215 1.393 13 LYS_LSN3 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -0.682 1.254 -0.051 14 LYS_LSN3 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.048 -0.404 -1.289 15 LYS_LSN3 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.095 -1.443 0.155 16 LYS_LSN3 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.222 0.366 1.421 17 LYS_LSN3 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.175 1.406 -0.023 18 LYS_LSN3 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -4.489 -0.228 -1.160 19 LYS_LSN3 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.533 -1.190 0.177 20 LYS_LSN3 HZ3 3HZ H 0 1 N N N 36.329 36.030 -0.408 -5.268 0.284 0.199 21 LYS_LSN3 H1 H1 H 0 1 N N N 37.661 40.597 -2.994 1.916 1.354 -1.305 22 LYS_LSN3 H2 H2 H 0 1 N N N 37.660 41.227 -4.501 1.105 1.986 -0.018 23 LYS_LSN3 H3 H3 H 0 1 N N N 36.685 39.967 -4.142 2.745 1.840 0.032 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LSN3 N CA SING N N 1 LYS_LSN3 CA C SING N N 2 LYS_LSN3 CA CB SING N N 3 LYS_LSN3 CA HA SING N N 4 LYS_LSN3 C O DOUB N N 5 LYS_LSN3 CB CG SING N N 6 LYS_LSN3 CB HB2 SING N N 7 LYS_LSN3 CB HB3 SING N N 8 LYS_LSN3 CG CD SING N N 9 LYS_LSN3 CG HG2 SING N N 10 LYS_LSN3 CG HG3 SING N N 11 LYS_LSN3 CD CE SING N N 12 LYS_LSN3 CD HD2 SING N N 13 LYS_LSN3 CD HD3 SING N N 14 LYS_LSN3 CE NZ SING N N 15 LYS_LSN3 CE HE2 SING N N 16 LYS_LSN3 CE HE3 SING N N 17 LYS_LSN3 NZ HZ1 SING N N 18 LYS_LSN3 NZ HZ2 SING N N 19 LYS_LSN3 NZ HZ3 SING N N 20 LYS_LSN3 H1 N SING N N 21 LYS_LSN3 H2 N SING N N 22 LYS_LSN3 H3 N SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CCCC[NH3+] LYS_LSN3 InChI InChI 1.01 InChI=1/C6H13N2O/c7-4-2-1-3-6(8)5-9/h6H,1-4,7-8H2/q-1/p+2/t6-/m0/s1 LYS_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+]CCCC[C@H]([NH3+])[C-]=O LYS_LSN3 SMILES CACTVS 3.341 [NH3+]CCCC[CH]([NH3+])[C-]=O LYS_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])C[C@@H]([C-]=O)[NH3+] LYS_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(CC[NH3+])CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2,6-diammonio-1-oxohexan-1-ide LYS_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-6-azaniumyl-1-oxo-hexan-2-yl]azanium # # data_LYS_LSN3_DHZ3 # _chem_comp.id LYS_LSN3_DHZ3 _chem_comp.name "L-LYSINE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NZ" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N2 O" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 130.188 _chem_comp.one_letter_code K _chem_comp.three_letter_code LYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal LYS_LSN3_DHZ3 N N N 1 1 N N N 37.577 40.385 -3.968 1.848 1.418 -0.307 1 LYS_LSN3_DHZ3 CA CA C 0 1 N N S 38.631 39.459 -4.356 1.718 0.076 0.275 2 LYS_LSN3_DHZ3 C C C -1 1 N N N 38.094 38.304 -5.212 2.896 -0.768 -0.140 3 LYS_LSN3_DHZ3 O O O 0 1 N N N 36.873 38.235 -5.490 4.016 -0.428 0.156 4 LYS_LSN3_DHZ3 CB CB C 0 1 N N N 39.374 38.919 -3.139 0.425 -0.573 -0.222 5 LYS_LSN3_DHZ3 CG CG C 0 1 N N N 38.523 38.111 -2.181 -0.776 0.214 0.305 6 LYS_LSN3_DHZ3 CD CD C 0 1 N N N 39.164 36.749 -1.903 -2.069 -0.435 -0.193 7 LYS_LSN3_DHZ3 CE CE C 0 1 N N N 38.106 35.761 -1.382 -3.271 0.352 0.334 8 LYS_LSN3_DHZ3 NZ NZ N 0 1 N N N 37.176 36.546 -0.539 -4.512 -0.271 -0.144 9 LYS_LSN3_DHZ3 HA HA H 0 1 N N N 39.343 40.030 -4.971 1.692 0.153 1.362 10 LYS_LSN3_DHZ3 HB2 1HB H 0 1 N N N 40.181 38.266 -3.502 0.413 -0.569 -1.312 11 LYS_LSN3_DHZ3 HB3 2HB H 0 1 N N N 39.731 39.795 -2.577 0.373 -1.600 0.138 12 LYS_LSN3_DHZ3 HG2 1HG H 0 1 N N N 38.426 38.662 -1.234 -0.764 0.211 1.394 13 LYS_LSN3_DHZ3 HG3 2HG H 0 1 N N N 37.534 37.951 -2.635 -0.723 1.242 -0.056 14 LYS_LSN3_DHZ3 HD2 1HD H 0 1 N N N 39.599 36.356 -2.834 -2.082 -0.431 -1.283 15 LYS_LSN3_DHZ3 HD3 2HD H 0 1 N N N 39.949 36.870 -1.142 -2.122 -1.462 0.167 16 LYS_LSN3_DHZ3 HE2 1HE H 0 1 N N N 37.566 35.297 -2.221 -3.258 0.349 1.424 17 LYS_LSN3_DHZ3 HE3 2HE H 0 1 N N N 38.573 34.948 -0.806 -3.218 1.380 -0.027 18 LYS_LSN3_DHZ3 HZ1 1HZ H 0 1 N N N 37.599 36.723 0.349 -5.321 0.231 0.191 19 LYS_LSN3_DHZ3 HZ2 2HZ H 0 1 N N N 36.971 37.415 -0.989 -4.519 -0.338 -1.151 20 LYS_LSN3_DHZ3 H1 H1 H 0 1 N N N 37.661 40.597 -2.994 1.873 1.347 -1.314 21 LYS_LSN3_DHZ3 H2 H2 H 0 1 N N N 37.660 41.227 -4.501 1.059 1.983 -0.029 22 LYS_LSN3_DHZ3 H3 H3 H 0 1 N N N 36.685 39.967 -4.142 2.701 1.847 0.021 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS_LSN3_DHZ3 N CA SING N N 1 LYS_LSN3_DHZ3 CA C SING N N 2 LYS_LSN3_DHZ3 CA CB SING N N 3 LYS_LSN3_DHZ3 CA HA SING N N 4 LYS_LSN3_DHZ3 C O DOUB N N 5 LYS_LSN3_DHZ3 CB CG SING N N 6 LYS_LSN3_DHZ3 CB HB2 SING N N 7 LYS_LSN3_DHZ3 CB HB3 SING N N 8 LYS_LSN3_DHZ3 CG CD SING N N 9 LYS_LSN3_DHZ3 CG HG2 SING N N 10 LYS_LSN3_DHZ3 CG HG3 SING N N 11 LYS_LSN3_DHZ3 CD CE SING N N 12 LYS_LSN3_DHZ3 CD HD2 SING N N 13 LYS_LSN3_DHZ3 CD HD3 SING N N 14 LYS_LSN3_DHZ3 CE NZ SING N N 15 LYS_LSN3_DHZ3 CE HE2 SING N N 16 LYS_LSN3_DHZ3 CE HE3 SING N N 17 LYS_LSN3_DHZ3 NZ HZ1 SING N N 18 LYS_LSN3_DHZ3 NZ HZ2 SING N N 19 LYS_LSN3_DHZ3 H1 N SING N N 20 LYS_LSN3_DHZ3 H2 N SING N N 21 LYS_LSN3_DHZ3 H3 N SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYS_LSN3_DHZ3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CCCCN LYS_LSN3_DHZ3 InChI InChI 1.01 InChI=1/C6H13N2O/c7-4-2-1-3-6(8)5-9/h6H,1-4,7-8H2/q-1/p+1/t6-/m0/s1 LYS_LSN3_DHZ3 SMILES_CANONICAL CACTVS 3.341 NCCCC[C@H]([NH3+])[C-]=O LYS_LSN3_DHZ3 SMILES CACTVS 3.341 NCCCC[CH]([NH3+])[C-]=O LYS_LSN3_DHZ3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CCN)C[C@@H]([C-]=O)[NH3+] LYS_LSN3_DHZ3 SMILES "OpenEye OEToolkits" 1.5.0 C(CCN)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYS_LSN3_DHZ3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-6-amino-2-ammonio-1-oxohexan-1-ide LYS_LSN3_DHZ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-6-amino-1-oxo-hexan-2-yl]azanium # # data_MET_LEO2 # _chem_comp.id MET_LEO2 _chem_comp.name "L-METHIONINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O2 S" _chem_comp.mon_nstd_parent_comp_id MET _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.195 _chem_comp.one_letter_code M _chem_comp.three_letter_code MET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal MET_LEO2 N N N -1 1 N N N 16.161 15.756 51.903 1.298 1.801 -0.006 1 MET_LEO2 CA CA C 0 1 N N S 15.084 16.739 51.596 1.259 0.413 0.472 2 MET_LEO2 C C C 0 1 N N N 13.846 15.930 51.367 2.531 -0.291 0.073 3 MET_LEO2 O O O 0 1 N N N 12.795 16.510 51.424 3.390 0.308 -0.550 4 MET_LEO2 CB CB C 0 1 N N N 15.401 17.530 50.317 0.061 -0.307 -0.150 5 MET_LEO2 CG CG C 0 1 N N N 16.183 18.846 50.502 -1.235 0.330 0.353 6 MET_LEO2 SD SD S 0 1 N N N 17.852 18.653 51.063 -2.655 -0.524 -0.384 7 MET_LEO2 CE CE C 0 1 N N N 18.614 17.814 49.556 -4.074 0.360 0.321 8 MET_LEO2 OXT OXT O -1 1 N Y N 13.865 14.721 51.154 2.701 -1.460 0.375 9 MET_LEO2 H H H 0 1 N N N 16.661 15.536 51.065 1.386 1.836 -1.010 10 MET_LEO2 HA HA H 0 1 N N N 14.977 17.462 52.418 1.164 0.404 1.558 11 MET_LEO2 HB2 1HB H 0 1 N N N 16.009 16.878 49.672 0.110 -0.222 -1.236 12 MET_LEO2 HB3 2HB H 0 1 N N N 14.426 17.820 49.898 0.083 -1.360 0.133 13 MET_LEO2 HG2 1HG H 0 1 N N N 16.215 19.355 49.527 -1.284 0.245 1.439 14 MET_LEO2 HG3 2HG H 0 1 N N N 15.656 19.413 51.284 -1.257 1.383 0.070 15 MET_LEO2 HE1 1HE H 0 1 N N N 18.762 18.557 48.758 -4.024 1.411 0.039 16 MET_LEO2 HE2 2HE H 0 1 N N N 19.584 17.374 49.832 -4.999 -0.075 -0.059 17 MET_LEO2 HE3 3HE H 0 1 N N N 17.940 17.021 49.198 -4.052 0.274 1.408 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MET_LEO2 N CA SING N N 1 MET_LEO2 N H SING N N 2 MET_LEO2 CA C SING N N 3 MET_LEO2 CA CB SING N N 4 MET_LEO2 CA HA SING N N 5 MET_LEO2 C O DOUB N N 6 MET_LEO2 C OXT SING N N 7 MET_LEO2 CB CG SING N N 8 MET_LEO2 CB HB2 SING N N 9 MET_LEO2 CB HB3 SING N N 10 MET_LEO2 CG SD SING N N 11 MET_LEO2 CG HG2 SING N N 12 MET_LEO2 CG HG3 SING N N 13 MET_LEO2 SD CE SING N N 14 MET_LEO2 CE HE1 SING N N 15 MET_LEO2 CE HE2 SING N N 16 MET_LEO2 CE HE3 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MET_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCSC MET_LEO2 InChI InChI 1.01 InChI=1/C5H10NO2S/c1-9-3-2-4(6)5(7)8/h4,6H,2-3H2,1H3,(H,7,8)/q-1/p-1/t4-/m0/s1 MET_LEO2 SMILES_CANONICAL CACTVS 3.341 CSCC[C@H]([NH-])C([O-])=O MET_LEO2 SMILES CACTVS 3.341 CSCC[CH]([NH-])C([O-])=O MET_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSCC[C@@H](C(=O)[O-])[NH-] MET_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 CSCCC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MET_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-4-(methylsulfanyl)butanoate MET_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-4-methylsulfanyl-butanoate # # data_MET_LEO2H # _chem_comp.id MET_LEO2H _chem_comp.name "L-METHIONINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H10 N O2 S" _chem_comp.mon_nstd_parent_comp_id MET _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.203 _chem_comp.one_letter_code M _chem_comp.three_letter_code MET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal MET_LEO2H N N N -1 1 N N N 16.161 15.756 51.903 1.229 1.845 0.172 1 MET_LEO2H CA CA C 0 1 N N S 15.084 16.739 51.596 1.224 0.413 0.500 2 MET_LEO2H C C C 0 1 N N N 13.846 15.930 51.367 2.508 -0.216 0.023 3 MET_LEO2H O O O 0 1 N N N 12.795 16.510 51.424 3.170 0.331 -0.827 4 MET_LEO2H CB CB C 0 1 N N N 15.401 17.530 50.317 0.038 -0.264 -0.190 5 MET_LEO2H CG CG C 0 1 N N N 16.183 18.846 50.502 -1.269 0.287 0.385 6 MET_LEO2H SD SD S 0 1 N N N 17.852 18.653 51.063 -2.675 -0.516 -0.433 7 MET_LEO2H CE CE C 0 1 N N N 18.614 17.814 49.556 -4.108 0.256 0.369 8 MET_LEO2H OXT OXT O 0 1 N Y N 13.865 14.721 51.154 2.916 -1.385 0.542 9 MET_LEO2H H H H 0 1 N N N 16.661 15.536 51.065 1.309 1.987 -0.824 10 MET_LEO2H HA HA H 0 1 N N N 14.977 17.462 52.418 1.137 0.288 1.579 11 MET_LEO2H HB2 1HB H 0 1 N N N 16.009 16.878 49.672 0.077 -0.064 -1.260 12 MET_LEO2H HB3 2HB H 0 1 N N N 14.426 17.820 49.898 0.084 -1.340 -0.020 13 MET_LEO2H HG2 1HG H 0 1 N N N 16.215 19.355 49.527 -1.308 0.087 1.456 14 MET_LEO2H HG3 2HG H 0 1 N N N 15.656 19.413 51.284 -1.315 1.363 0.215 15 MET_LEO2H HE1 1HE H 0 1 N N N 18.762 18.557 48.758 -4.076 0.056 1.440 16 MET_LEO2H HE2 2HE H 0 1 N N N 19.584 17.374 49.832 -4.083 1.332 0.199 17 MET_LEO2H HE3 3HE H 0 1 N N N 17.940 17.021 49.198 -5.025 -0.157 -0.050 18 MET_LEO2H HXT HXT H 0 1 N Y N 12.975 14.402 51.059 3.746 -1.749 0.205 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MET_LEO2H N CA SING N N 1 MET_LEO2H N H SING N N 2 MET_LEO2H CA C SING N N 3 MET_LEO2H CA CB SING N N 4 MET_LEO2H CA HA SING N N 5 MET_LEO2H C O DOUB N N 6 MET_LEO2H C OXT SING N N 7 MET_LEO2H CB CG SING N N 8 MET_LEO2H CB HB2 SING N N 9 MET_LEO2H CB HB3 SING N N 10 MET_LEO2H CG SD SING N N 11 MET_LEO2H CG HG2 SING N N 12 MET_LEO2H CG HG3 SING N N 13 MET_LEO2H SD CE SING N N 14 MET_LEO2H CE HE1 SING N N 15 MET_LEO2H CE HE2 SING N N 16 MET_LEO2H CE HE3 SING N N 17 MET_LEO2H OXT HXT SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MET_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])CCSC MET_LEO2H InChI InChI 1.01 InChI=1/C5H10NO2S/c1-9-3-2-4(6)5(7)8/h4,6H,2-3H2,1H3,(H,7,8)/q-1/t4-/m0/s1 MET_LEO2H SMILES_CANONICAL CACTVS 3.341 CSCC[C@H]([NH-])C(O)=O MET_LEO2H SMILES CACTVS 3.341 CSCC[CH]([NH-])C(O)=O MET_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSCC[C@@H](C(=O)O)[NH-] MET_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 CSCCC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MET_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-3-(methylsulfanyl)propyl]azanide MET_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-4-methylsulfanyl-1-oxo-butan-2-yl]azanide # # data_MET_LFOH # _chem_comp.id MET_LFOH _chem_comp.name "L-METHIONINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H11 N O2 S" _chem_comp.mon_nstd_parent_comp_id MET _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 149.211 _chem_comp.one_letter_code M _chem_comp.three_letter_code MET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal MET_LFOH N N N 0 1 N N N 16.161 15.756 51.903 1.228 1.830 0.137 1 MET_LFOH CA CA C 0 1 N N S 15.084 16.739 51.596 1.222 0.404 0.489 2 MET_LFOH C C C 0 1 N N N 13.846 15.930 51.367 2.505 -0.234 0.023 3 MET_LFOH O O O 0 1 N N N 12.795 16.510 51.424 3.167 0.298 -0.836 4 MET_LFOH CB CB C 0 1 N N N 15.401 17.530 50.317 0.035 -0.283 -0.189 5 MET_LFOH CG CG C 0 1 N N N 16.183 18.846 50.502 -1.271 0.280 0.377 6 MET_LFOH SD SD S 0 1 N N N 17.852 18.653 51.063 -2.679 -0.535 -0.427 7 MET_LFOH CE CE C 0 1 N N N 18.614 17.814 49.556 -4.110 0.251 0.363 8 MET_LFOH OXT OXT O 0 1 N Y N 13.865 14.721 51.154 2.912 -1.394 0.562 9 MET_LFOH HA HA H 0 1 N N N 14.977 17.462 52.418 1.135 0.297 1.570 10 MET_LFOH HB2 1HB H 0 1 N N N 16.009 16.878 49.672 0.074 -0.101 -1.263 11 MET_LFOH HB3 2HB H 0 1 N N N 14.426 17.820 49.898 0.080 -1.356 -0.001 12 MET_LFOH HG2 1HG H 0 1 N N N 16.215 19.355 49.527 -1.310 0.097 1.451 13 MET_LFOH HG3 2HG H 0 1 N N N 15.656 19.413 51.284 -1.316 1.352 0.189 14 MET_LFOH HE1 1HE H 0 1 N N N 18.762 18.557 48.758 -5.028 -0.168 -0.050 15 MET_LFOH HE2 2HE H 0 1 N N N 19.584 17.374 49.832 -4.078 0.070 1.437 16 MET_LFOH HE3 3HE H 0 1 N N N 17.940 17.021 49.198 -4.084 1.325 0.175 17 MET_LFOH HXT HXT H 0 1 N Y N 12.975 14.402 51.059 3.741 -1.765 0.230 18 MET_LFOH H1 H1 H 0 1 N N N 16.661 15.536 51.065 1.308 1.956 -0.861 19 MET_LFOH H2 H2 H 0 1 N N N 16.791 16.150 52.573 0.408 2.295 0.495 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MET_LFOH N CA SING N N 1 MET_LFOH CA C SING N N 2 MET_LFOH CA CB SING N N 3 MET_LFOH CA HA SING N N 4 MET_LFOH C O DOUB N N 5 MET_LFOH C OXT SING N N 6 MET_LFOH CB CG SING N N 7 MET_LFOH CB HB2 SING N N 8 MET_LFOH CB HB3 SING N N 9 MET_LFOH CG SD SING N N 10 MET_LFOH CG HG2 SING N N 11 MET_LFOH CG HG3 SING N N 12 MET_LFOH SD CE SING N N 13 MET_LFOH CE HE1 SING N N 14 MET_LFOH CE HE2 SING N N 15 MET_LFOH CE HE3 SING N N 16 MET_LFOH OXT HXT SING N N 17 MET_LFOH H1 N SING N N 18 MET_LFOH H2 N SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MET_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)CCSC MET_LFOH InChI InChI 1.01 InChI=1/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1 MET_LFOH SMILES_CANONICAL CACTVS 3.341 CSCC[C@H](N)C(O)=O MET_LFOH SMILES CACTVS 3.341 CSCC[CH](N)C(O)=O MET_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSCC[C@@H](C(=O)O)N MET_LFOH SMILES "OpenEye OEToolkits" 1.5.0 CSCCC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MET_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-methionine MET_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-methylsulfanyl-butanoic acid" # # data_MET_LFZW # _chem_comp.id MET_LFZW _chem_comp.name "L-METHIONINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H11 N O2 S" _chem_comp.mon_nstd_parent_comp_id MET _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 149.211 _chem_comp.one_letter_code M _chem_comp.three_letter_code MET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal MET_LFZW N N N 1 1 N N N 16.161 15.756 51.903 1.293 1.761 -0.042 1 MET_LFZW CA CA C 0 1 N N S 15.084 16.739 51.596 1.245 0.381 0.460 2 MET_LFZW C C C 0 1 N N N 13.846 15.930 51.367 2.511 -0.338 0.072 3 MET_LFZW O O O 0 1 N N N 12.795 16.510 51.424 3.374 0.245 -0.563 4 MET_LFZW CB CB C 0 1 N N N 15.401 17.530 50.317 0.041 -0.341 -0.149 5 MET_LFZW CG CG C 0 1 N N N 16.183 18.846 50.502 -1.250 0.314 0.345 6 MET_LFZW SD SD S 0 1 N N N 17.852 18.653 51.063 -2.677 -0.542 -0.377 7 MET_LFZW CE CE C 0 1 N N N 18.614 17.814 49.556 -4.089 0.363 0.315 8 MET_LFZW OXT OXT O -1 1 N Y N 13.865 14.721 51.154 2.673 -1.503 0.394 9 MET_LFZW HA HA H 0 1 N N N 14.977 17.462 52.418 1.151 0.392 1.546 10 MET_LFZW HB2 1HB H 0 1 N N N 16.009 16.878 49.672 0.090 -0.275 -1.236 11 MET_LFZW HB3 2HB H 0 1 N N N 14.426 17.820 49.898 0.056 -1.388 0.152 12 MET_LFZW HG2 1HG H 0 1 N N N 16.215 19.355 49.527 -1.298 0.248 1.432 13 MET_LFZW HG3 2HG H 0 1 N N N 15.656 19.413 51.284 -1.264 1.362 0.044 14 MET_LFZW HE1 1HE H 0 1 N N N 18.762 18.557 48.758 -5.016 -0.072 -0.057 15 MET_LFZW HE2 2HE H 0 1 N N N 19.584 17.374 49.832 -4.066 0.296 1.403 16 MET_LFZW HE3 3HE H 0 1 N N N 17.940 17.021 49.198 -4.032 1.409 0.014 17 MET_LFZW H1 H1 H 0 1 N N N 16.661 15.536 51.065 1.380 1.751 -1.047 18 MET_LFZW H2 H2 H 0 1 N N N 16.791 16.150 52.573 0.445 2.243 0.218 19 MET_LFZW H3 H3 H 0 1 N N N 15.754 14.923 52.277 2.087 2.238 0.360 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MET_LFZW N CA SING N N 1 MET_LFZW CA C SING N N 2 MET_LFZW CA CB SING N N 3 MET_LFZW CA HA SING N N 4 MET_LFZW C O DOUB N N 5 MET_LFZW C OXT SING N N 6 MET_LFZW CB CG SING N N 7 MET_LFZW CB HB2 SING N N 8 MET_LFZW CB HB3 SING N N 9 MET_LFZW CG SD SING N N 10 MET_LFZW CG HG2 SING N N 11 MET_LFZW CG HG3 SING N N 12 MET_LFZW SD CE SING N N 13 MET_LFZW CE HE1 SING N N 14 MET_LFZW CE HE2 SING N N 15 MET_LFZW CE HE3 SING N N 16 MET_LFZW H1 N SING N N 17 MET_LFZW H2 N SING N N 18 MET_LFZW H3 N SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MET_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CCSC MET_LFZW InChI InChI 1.01 InChI=1/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1 MET_LFZW SMILES_CANONICAL CACTVS 3.341 CSCC[C@H]([NH3+])C([O-])=O MET_LFZW SMILES CACTVS 3.341 CSCC[CH]([NH3+])C([O-])=O MET_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSCC[C@@H](C(=O)[O-])[NH3+] MET_LFZW SMILES "OpenEye OEToolkits" 1.5.0 CSCCC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MET_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-4-(methylsulfanyl)butanoate MET_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-4-methylsulfanyl-butanoate # # data_MET_LL # _chem_comp.id MET_LL _chem_comp.name "L-METHIONINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O S" _chem_comp.mon_nstd_parent_comp_id MET _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.196 _chem_comp.one_letter_code M _chem_comp.three_letter_code MET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal MET_LL N N N -1 1 N N N 16.161 15.756 51.903 1.719 1.466 -0.422 1 MET_LL CA CA C 0 1 N N S 15.084 16.739 51.596 1.598 0.182 0.282 2 MET_LL C C C -1 1 N N N 13.846 15.930 51.367 2.786 -0.685 -0.045 3 MET_LL O O O 0 1 N N N 12.795 16.510 51.424 3.901 -0.308 0.226 4 MET_LL CB CB C 0 1 N N N 15.401 17.530 50.317 0.315 -0.524 -0.163 5 MET_LL CG CG C 0 1 N N N 16.183 18.846 50.502 -0.898 0.297 0.280 6 MET_LL SD SD S 0 1 N N N 17.852 18.653 51.063 -2.419 -0.539 -0.246 7 MET_LL CE CE C 0 1 N N N 18.614 17.814 49.556 -3.723 0.567 0.359 8 MET_LL H H H 0 1 N N N 16.661 15.536 51.065 1.755 1.329 -1.421 9 MET_LL HA HA H 0 1 N N N 14.977 17.462 52.418 1.562 0.359 1.357 10 MET_LL HB2 1HB H 0 1 N N N 16.009 16.878 49.672 0.311 -0.621 -1.248 11 MET_LL HB3 2HB H 0 1 N N N 14.426 17.820 49.898 0.269 -1.514 0.291 12 MET_LL HG2 1HG H 0 1 N N N 16.215 19.355 49.527 -0.894 0.394 1.366 13 MET_LL HG3 2HG H 0 1 N N N 15.656 19.413 51.284 -0.852 1.287 -0.173 14 MET_LL HE1 1HE H 0 1 N N N 18.762 18.557 48.758 -3.607 1.550 -0.096 15 MET_LL HE2 2HE H 0 1 N N N 19.584 17.374 49.832 -4.699 0.157 0.095 16 MET_LL HE3 3HE H 0 1 N N N 17.940 17.021 49.198 -3.649 0.657 1.443 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MET_LL N CA SING N N 1 MET_LL N H SING N N 2 MET_LL CA C SING N N 3 MET_LL CA CB SING N N 4 MET_LL CA HA SING N N 5 MET_LL C O DOUB N N 6 MET_LL CB CG SING N N 7 MET_LL CB HB2 SING N N 8 MET_LL CB HB3 SING N N 9 MET_LL CG SD SING N N 10 MET_LL CG HG2 SING N N 11 MET_LL CG HG3 SING N N 12 MET_LL SD CE SING N N 13 MET_LL CE HE1 SING N N 14 MET_LL CE HE2 SING N N 15 MET_LL CE HE3 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MET_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CCSC MET_LL InChI InChI 1.01 InChI=1/C5H9NOS/c1-8-3-2-5(6)4-7/h5-6H,2-3H2,1H3/q-2/t5-/m0/s1 MET_LL SMILES_CANONICAL CACTVS 3.341 CSCC[C@H]([NH-])[C-]=O MET_LL SMILES CACTVS 3.341 CSCC[CH]([NH-])[C-]=O MET_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSCC[C@@H]([C-]=O)[NH-] MET_LL SMILES "OpenEye OEToolkits" 1.5.0 CSCCC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MET_LL "SYSTEMATIC NAME" ACDLabs 10.04 {(1S)-1-[2-(methylsulfanyl)ethyl]-2-oxoethan-2-idyl}azanide MET_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-methylsulfanyl-1-oxo-butan-2-yl]azanide # # data_MET_LSN3 # _chem_comp.id MET_LSN3 _chem_comp.name "L-METHIONINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H11 N O S" _chem_comp.mon_nstd_parent_comp_id MET _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 133.212 _chem_comp.one_letter_code M _chem_comp.three_letter_code MET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal MET_LSN3 N N N 1 1 N N N 16.161 15.756 51.903 -1.706 1.426 0.402 1 MET_LSN3 CA CA C 0 1 N N S 15.084 16.739 51.596 -1.572 0.135 -0.287 2 MET_LSN3 C C C -1 1 N N N 13.846 15.930 51.367 -2.754 -0.738 0.050 3 MET_LSN3 O O O 0 1 N N N 12.795 16.510 51.424 -3.872 -0.375 -0.226 4 MET_LSN3 CB CB C 0 1 N N N 15.401 17.530 50.317 -0.284 -0.554 0.166 5 MET_LSN3 CG CG C 0 1 N N N 16.183 18.846 50.502 0.922 0.272 -0.285 6 MET_LSN3 SD SD S 0 1 N N N 17.852 18.653 51.063 2.450 -0.545 0.251 7 MET_LSN3 CE CE C 0 1 N N N 18.614 17.814 49.556 3.745 0.566 -0.366 8 MET_LSN3 HA HA H 0 1 N N N 14.977 17.462 52.418 -1.537 0.300 -1.363 9 MET_LSN3 HB2 1HB H 0 1 N N N 16.009 16.878 49.672 -0.279 -0.639 1.253 10 MET_LSN3 HB3 2HB H 0 1 N N N 14.426 17.820 49.898 -0.229 -1.549 -0.276 11 MET_LSN3 HG2 1HG H 0 1 N N N 16.215 19.355 49.527 0.918 0.357 -1.372 12 MET_LSN3 HG3 2HG H 0 1 N N N 15.656 19.413 51.284 0.867 1.267 0.157 13 MET_LSN3 HE1 1HE H 0 1 N N N 18.762 18.557 48.758 4.724 0.168 -0.097 14 MET_LSN3 HE2 2HE H 0 1 N N N 19.584 17.374 49.832 3.670 0.643 -1.451 15 MET_LSN3 HE3 3HE H 0 1 N N N 17.940 17.021 49.198 3.620 1.553 0.078 16 MET_LSN3 H1 H1 H 0 1 N N N 16.661 15.536 51.065 -0.915 2.010 0.177 17 MET_LSN3 H2 H2 H 0 1 N N N 16.791 16.150 52.573 -2.556 1.880 0.104 18 MET_LSN3 H3 H3 H 0 1 N N N 15.754 14.923 52.277 -1.738 1.273 1.399 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MET_LSN3 N CA SING N N 1 MET_LSN3 CA C SING N N 2 MET_LSN3 CA CB SING N N 3 MET_LSN3 CA HA SING N N 4 MET_LSN3 C O DOUB N N 5 MET_LSN3 CB CG SING N N 6 MET_LSN3 CB HB2 SING N N 7 MET_LSN3 CB HB3 SING N N 8 MET_LSN3 CG SD SING N N 9 MET_LSN3 CG HG2 SING N N 10 MET_LSN3 CG HG3 SING N N 11 MET_LSN3 SD CE SING N N 12 MET_LSN3 CE HE1 SING N N 13 MET_LSN3 CE HE2 SING N N 14 MET_LSN3 CE HE3 SING N N 15 MET_LSN3 H1 N SING N N 16 MET_LSN3 H2 N SING N N 17 MET_LSN3 H3 N SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MET_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CCSC MET_LSN3 InChI InChI 1.01 InChI=1/C5H10NOS/c1-8-3-2-5(6)4-7/h5H,2-3,6H2,1H3/q-1/p+1/t5-/m0/s1 MET_LSN3 SMILES_CANONICAL CACTVS 3.341 CSCC[C@H]([NH3+])[C-]=O MET_LSN3 SMILES CACTVS 3.341 CSCC[CH]([NH3+])[C-]=O MET_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSCC[C@@H]([C-]=O)[NH3+] MET_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 CSCCC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MET_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-4-(methylsulfanyl)-1-oxobutan-1-ide MET_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-4-methylsulfanyl-1-oxo-butan-2-yl]azanium # # data_PHE_LEO2 # _chem_comp.id PHE_LEO2 _chem_comp.name "L-PHENYLALANINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H9 N O2" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 163.173 _chem_comp.one_letter_code F _chem_comp.three_letter_code PHE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PHE_LEO2 N N N -1 1 N N N 3.260 22.302 6.000 1.137 1.477 0.723 1 PHE_LEO2 CA CA C 0 1 N N S 4.252 21.272 5.710 1.330 0.053 0.417 2 PHE_LEO2 C C C 0 1 N N N 5.559 21.899 5.229 2.777 -0.197 0.081 3 PHE_LEO2 O O O 0 1 N N N 5.836 21.838 4.012 3.575 0.725 0.096 4 PHE_LEO2 CB CB C 0 1 N N N 3.708 20.298 4.656 0.455 -0.335 -0.776 5 PHE_LEO2 CG CG C 0 1 Y N N 4.596 19.106 4.406 -0.998 -0.201 -0.399 6 PHE_LEO2 CD1 CD1 C 0 1 Y N N 5.077 18.339 5.467 -1.657 0.997 -0.601 7 PHE_LEO2 CD2 CD2 C 0 1 Y N N 4.927 18.732 3.109 -1.673 -1.278 0.144 8 PHE_LEO2 CE1 CE1 C 0 1 Y N N 5.874 17.219 5.237 -2.990 1.120 -0.254 9 PHE_LEO2 CE2 CE2 C 0 1 Y N N 5.718 17.618 2.867 -3.006 -1.156 0.490 10 PHE_LEO2 CZ CZ C 0 1 Y N N 6.193 16.860 3.932 -3.664 0.044 0.293 11 PHE_LEO2 OXT OXT O -1 1 N Y N 6.283 22.460 6.079 3.151 -1.321 -0.205 12 PHE_LEO2 H H H 0 1 N N N 3.033 22.282 6.974 1.391 2.054 -0.065 13 PHE_LEO2 HA HA H 0 1 N N N 4.458 20.716 6.637 1.049 -0.546 1.283 14 PHE_LEO2 HB2 1HB H 0 1 N N N 2.733 19.928 5.007 0.674 0.324 -1.617 15 PHE_LEO2 HB3 2HB H 0 1 N N N 3.643 20.854 3.709 0.663 -1.366 -1.059 16 PHE_LEO2 HD1 HD1 H 0 1 N N N 4.828 18.617 6.481 -1.131 1.838 -1.028 17 PHE_LEO2 HD2 HD2 H 0 1 N N N 4.563 19.317 2.277 -1.159 -2.216 0.297 18 PHE_LEO2 HE1 HE1 H 0 1 N N N 6.241 16.634 6.067 -3.505 2.056 -0.411 19 PHE_LEO2 HE2 HE2 H 0 1 N N N 5.965 17.340 1.853 -3.533 -1.998 0.914 20 PHE_LEO2 HZ HZ H 0 1 N N N 6.809 15.993 3.746 -4.705 0.140 0.564 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHE_LEO2 N CA SING N N 1 PHE_LEO2 N H SING N N 2 PHE_LEO2 CA C SING N N 3 PHE_LEO2 CA CB SING N N 4 PHE_LEO2 CA HA SING N N 5 PHE_LEO2 C O DOUB N N 6 PHE_LEO2 C OXT SING N N 7 PHE_LEO2 CB CG SING N N 8 PHE_LEO2 CB HB2 SING N N 9 PHE_LEO2 CB HB3 SING N N 10 PHE_LEO2 CG CD1 DOUB Y N 11 PHE_LEO2 CG CD2 SING Y N 12 PHE_LEO2 CD1 CE1 SING Y N 13 PHE_LEO2 CD1 HD1 SING N N 14 PHE_LEO2 CD2 CE2 DOUB Y N 15 PHE_LEO2 CD2 HD2 SING N N 16 PHE_LEO2 CE1 CZ DOUB Y N 17 PHE_LEO2 CE1 HE1 SING N N 18 PHE_LEO2 CE2 CZ SING Y N 19 PHE_LEO2 CE2 HE2 SING N N 20 PHE_LEO2 CZ HZ SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PHE_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])Cc1ccccc1 PHE_LEO2 InChI InChI 1.01 InChI=1/C9H10NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8,10H,6H2,(H,11,12)/q-1/p-1/t8-/m0/s1 PHE_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1ccccc1)C([O-])=O PHE_LEO2 SMILES CACTVS 3.341 [NH-][CH](Cc1ccccc1)C([O-])=O PHE_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H](C(=O)[O-])[NH-] PHE_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PHE_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-phenylpropanoate PHE_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-phenyl-propanoate # # data_PHE_LEO2H # _chem_comp.id PHE_LEO2H _chem_comp.name "L-PHENYLALANINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H10 N O2" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.181 _chem_comp.one_letter_code F _chem_comp.three_letter_code PHE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PHE_LEO2H N N N -1 1 N N N 3.260 22.302 6.000 1.077 1.444 0.865 1 PHE_LEO2H CA CA C 0 1 N N S 4.252 21.272 5.710 1.298 0.060 0.426 2 PHE_LEO2H C C C 0 1 N N N 5.559 21.899 5.229 2.750 -0.130 0.072 3 PHE_LEO2H O O O 0 1 N N N 5.836 21.838 4.012 3.442 0.829 -0.177 4 PHE_LEO2H CB CB C 0 1 N N N 3.708 20.298 4.656 0.432 -0.230 -0.802 5 PHE_LEO2H CG CG C 0 1 Y N N 4.596 19.106 4.406 -1.024 -0.160 -0.418 6 PHE_LEO2H CD1 CD1 C 0 1 Y N N 5.077 18.339 5.467 -1.706 1.039 -0.507 7 PHE_LEO2H CD2 CD2 C 0 1 Y N N 4.927 18.732 3.109 -1.679 -1.297 0.018 8 PHE_LEO2H CE1 CE1 C 0 1 Y N N 5.874 17.219 5.237 -3.041 1.102 -0.155 9 PHE_LEO2H CE2 CE2 C 0 1 Y N N 5.718 17.618 2.867 -3.014 -1.233 0.370 10 PHE_LEO2H CZ CZ C 0 1 Y N N 6.193 16.860 3.932 -3.694 -0.033 0.286 11 PHE_LEO2H OXT OXT O 0 1 N Y N 6.283 22.460 6.079 3.276 -1.364 0.034 12 PHE_LEO2H H H H 0 1 N N N 3.033 22.282 6.974 1.321 2.098 0.136 13 PHE_LEO2H HA HA H 0 1 N N N 4.458 20.716 6.637 1.027 -0.624 1.230 14 PHE_LEO2H HB2 1HB H 0 1 N N N 2.733 19.928 5.007 0.639 0.510 -1.575 15 PHE_LEO2H HB3 2HB H 0 1 N N N 3.643 20.854 3.709 0.660 -1.226 -1.181 16 PHE_LEO2H HD1 HD1 H 0 1 N N N 4.828 18.617 6.481 -1.195 1.926 -0.852 17 PHE_LEO2H HD2 HD2 H 0 1 N N N 4.563 19.317 2.277 -1.147 -2.235 0.083 18 PHE_LEO2H HE1 HE1 H 0 1 N N N 6.241 16.634 6.067 -3.573 2.040 -0.224 19 PHE_LEO2H HE2 HE2 H 0 1 N N N 5.965 17.340 1.853 -3.525 -2.122 0.711 20 PHE_LEO2H HZ HZ H 0 1 N N N 6.809 15.993 3.746 -4.737 0.017 0.562 21 PHE_LEO2H HXT HXT H 0 1 N Y N 7.053 22.819 5.653 4.212 -1.436 -0.198 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHE_LEO2H N CA SING N N 1 PHE_LEO2H N H SING N N 2 PHE_LEO2H CA C SING N N 3 PHE_LEO2H CA CB SING N N 4 PHE_LEO2H CA HA SING N N 5 PHE_LEO2H C O DOUB N N 6 PHE_LEO2H C OXT SING N N 7 PHE_LEO2H CB CG SING N N 8 PHE_LEO2H CB HB2 SING N N 9 PHE_LEO2H CB HB3 SING N N 10 PHE_LEO2H CG CD1 DOUB Y N 11 PHE_LEO2H CG CD2 SING Y N 12 PHE_LEO2H CD1 CE1 SING Y N 13 PHE_LEO2H CD1 HD1 SING N N 14 PHE_LEO2H CD2 CE2 DOUB Y N 15 PHE_LEO2H CD2 HD2 SING N N 16 PHE_LEO2H CE1 CZ DOUB Y N 17 PHE_LEO2H CE1 HE1 SING N N 18 PHE_LEO2H CE2 CZ SING Y N 19 PHE_LEO2H CE2 HE2 SING N N 20 PHE_LEO2H CZ HZ SING N N 21 PHE_LEO2H OXT HXT SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PHE_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])Cc1ccccc1 PHE_LEO2H InChI InChI 1.01 InChI=1/C9H10NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8,10H,6H2,(H,11,12)/q-1/t8-/m0/s1 PHE_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1ccccc1)C(O)=O PHE_LEO2H SMILES CACTVS 3.341 [NH-][CH](Cc1ccccc1)C(O)=O PHE_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H](C(=O)O)[NH-] PHE_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PHE_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-2-phenylethyl]azanide PHE_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-1-oxo-3-phenyl-propan-2-yl]azanide # # data_PHE_LFOH # _chem_comp.id PHE_LFOH _chem_comp.name "L-PHENYLALANINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H11 N O2" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 165.189 _chem_comp.one_letter_code F _chem_comp.three_letter_code PHE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PHE_LFOH N N N 0 1 N N N 3.260 22.302 6.000 -1.074 1.449 -0.820 1 PHE_LFOH CA CA C 0 1 N N S 4.252 21.272 5.710 -1.289 0.055 -0.411 2 PHE_LFOH C C C 0 1 N N N 5.559 21.899 5.229 -2.740 -0.147 -0.057 3 PHE_LFOH O O O 0 1 N N N 5.836 21.838 4.012 -3.434 0.804 0.215 4 PHE_LFOH CB CB C 0 1 N N N 3.708 20.298 4.656 -0.419 -0.259 0.808 5 PHE_LFOH CG CG C 0 1 Y N N 4.596 19.106 4.406 1.035 -0.177 0.422 6 PHE_LFOH CD1 CD1 C 0 1 Y N N 5.077 18.339 5.467 1.714 1.022 0.535 7 PHE_LFOH CD2 CD2 C 0 1 Y N N 4.927 18.732 3.109 1.692 -1.301 -0.041 8 PHE_LFOH CE1 CE1 C 0 1 Y N N 5.874 17.219 5.237 3.047 1.098 0.181 9 PHE_LFOH CE2 CE2 C 0 1 Y N N 5.718 17.618 2.867 3.026 -1.226 -0.396 10 PHE_LFOH CZ CZ C 0 1 Y N N 6.193 16.860 3.932 3.703 -0.025 -0.287 11 PHE_LFOH OXT OXT O 0 1 N Y N 6.283 22.460 6.079 -3.262 -1.384 -0.045 12 PHE_LFOH HA HA H 0 1 N N N 4.458 20.716 6.637 -1.019 -0.610 -1.231 13 PHE_LFOH HB2 1HB H 0 1 N N N 2.733 19.928 5.007 -0.627 0.462 1.598 14 PHE_LFOH HB3 2HB H 0 1 N N N 3.643 20.854 3.709 -0.644 -1.264 1.166 15 PHE_LFOH HD1 HD1 H 0 1 N N N 4.828 18.617 6.481 1.201 1.900 0.901 16 PHE_LFOH HD2 HD2 H 0 1 N N N 4.563 19.317 2.277 1.163 -2.239 -0.126 17 PHE_LFOH HE1 HE1 H 0 1 N N N 6.241 16.634 6.067 3.577 2.035 0.269 18 PHE_LFOH HE2 HE2 H 0 1 N N N 5.965 17.340 1.853 3.539 -2.105 -0.757 19 PHE_LFOH HZ HZ H 0 1 N N N 6.809 15.993 3.746 4.745 0.034 -0.564 20 PHE_LFOH HXT HXT H 0 1 N Y N 7.053 22.819 5.653 -4.198 -1.463 0.187 21 PHE_LFOH H1 H1 H 0 1 N N N 3.033 22.282 6.974 -1.589 1.663 -1.661 22 PHE_LFOH H2 H2 H 0 1 N N N 3.632 23.199 5.763 -1.318 2.086 -0.076 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHE_LFOH N CA SING N N 1 PHE_LFOH CA C SING N N 2 PHE_LFOH CA CB SING N N 3 PHE_LFOH CA HA SING N N 4 PHE_LFOH C O DOUB N N 5 PHE_LFOH C OXT SING N N 6 PHE_LFOH CB CG SING N N 7 PHE_LFOH CB HB2 SING N N 8 PHE_LFOH CB HB3 SING N N 9 PHE_LFOH CG CD1 DOUB Y N 10 PHE_LFOH CG CD2 SING Y N 11 PHE_LFOH CD1 CE1 SING Y N 12 PHE_LFOH CD1 HD1 SING N N 13 PHE_LFOH CD2 CE2 DOUB Y N 14 PHE_LFOH CD2 HD2 SING N N 15 PHE_LFOH CE1 CZ DOUB Y N 16 PHE_LFOH CE1 HE1 SING N N 17 PHE_LFOH CE2 CZ SING Y N 18 PHE_LFOH CE2 HE2 SING N N 19 PHE_LFOH CZ HZ SING N N 20 PHE_LFOH OXT HXT SING N N 21 PHE_LFOH H1 N SING N N 22 PHE_LFOH H2 N SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PHE_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)Cc1ccccc1 PHE_LFOH InChI InChI 1.01 InChI=1/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/t8-/m0/s1 PHE_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1ccccc1)C(O)=O PHE_LFOH SMILES CACTVS 3.341 N[CH](Cc1ccccc1)C(O)=O PHE_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H](C(=O)O)N PHE_LFOH SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PHE_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-phenylalanine PHE_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-phenyl-propanoic acid" # # data_PHE_LFZW # _chem_comp.id PHE_LFZW _chem_comp.name "L-PHENYLALANINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H11 N O2" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 165.189 _chem_comp.one_letter_code F _chem_comp.three_letter_code PHE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PHE_LFZW N N N 1 1 N N N 3.260 22.302 6.000 -1.133 1.476 -0.655 1 PHE_LFZW CA CA C 0 1 N N S 4.252 21.272 5.710 -1.319 0.041 -0.397 2 PHE_LFZW C C C 0 1 N N N 5.559 21.899 5.229 -2.765 -0.226 -0.066 3 PHE_LFZW O O O 0 1 N N N 5.836 21.838 4.012 -3.566 0.693 -0.047 4 PHE_LFZW CB CB C 0 1 N N N 3.708 20.298 4.656 -0.440 -0.384 0.780 5 PHE_LFZW CG CG C 0 1 Y N N 4.596 19.106 4.406 1.012 -0.232 0.403 6 PHE_LFZW CD1 CD1 C 0 1 Y N N 5.077 18.339 5.467 1.667 0.962 0.644 7 PHE_LFZW CD2 CD2 C 0 1 Y N N 4.927 18.732 3.109 1.689 -1.287 -0.178 8 PHE_LFZW CE1 CE1 C 0 1 Y N N 5.874 17.219 5.237 2.998 1.101 0.298 9 PHE_LFZW CE2 CE2 C 0 1 Y N N 5.718 17.618 2.867 3.020 -1.148 -0.523 10 PHE_LFZW CZ CZ C 0 1 Y N N 6.193 16.860 3.932 3.674 0.047 -0.287 11 PHE_LFZW OXT OXT O -1 1 N Y N 6.283 22.460 6.079 -3.134 -1.361 0.182 12 PHE_LFZW HA HA H 0 1 N N N 4.458 20.716 6.637 -1.039 -0.527 -1.284 13 PHE_LFZW HB2 1HB H 0 1 N N N 2.733 19.928 5.007 -0.659 0.245 1.643 14 PHE_LFZW HB3 2HB H 0 1 N N N 3.643 20.854 3.709 -0.643 -1.425 1.028 15 PHE_LFZW HD1 HD1 H 0 1 N N N 4.828 18.617 6.481 1.139 1.785 1.102 16 PHE_LFZW HD2 HD2 H 0 1 N N N 4.563 19.317 2.277 1.179 -2.221 -0.361 17 PHE_LFZW HE1 HE1 H 0 1 N N N 6.241 16.634 6.067 3.510 2.033 0.486 18 PHE_LFZW HE2 HE2 H 0 1 N N N 5.965 17.340 1.853 3.550 -1.973 -0.977 19 PHE_LFZW HZ HZ H 0 1 N N N 6.809 15.993 3.746 4.714 0.156 -0.558 20 PHE_LFZW H1 H1 H 0 1 N N N 3.033 22.282 6.974 -0.165 1.654 -0.877 21 PHE_LFZW H2 H2 H 0 1 N N N 3.632 23.199 5.763 -1.713 1.756 -1.432 22 PHE_LFZW H3 H3 H 0 1 N N N 2.435 22.130 5.462 -1.393 2.001 0.166 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHE_LFZW N CA SING N N 1 PHE_LFZW CA C SING N N 2 PHE_LFZW CA CB SING N N 3 PHE_LFZW CA HA SING N N 4 PHE_LFZW C O DOUB N N 5 PHE_LFZW C OXT SING N N 6 PHE_LFZW CB CG SING N N 7 PHE_LFZW CB HB2 SING N N 8 PHE_LFZW CB HB3 SING N N 9 PHE_LFZW CG CD1 DOUB Y N 10 PHE_LFZW CG CD2 SING Y N 11 PHE_LFZW CD1 CE1 SING Y N 12 PHE_LFZW CD1 HD1 SING N N 13 PHE_LFZW CD2 CE2 DOUB Y N 14 PHE_LFZW CD2 HD2 SING N N 15 PHE_LFZW CE1 CZ DOUB Y N 16 PHE_LFZW CE1 HE1 SING N N 17 PHE_LFZW CE2 CZ SING Y N 18 PHE_LFZW CE2 HE2 SING N N 19 PHE_LFZW CZ HZ SING N N 20 PHE_LFZW H1 N SING N N 21 PHE_LFZW H2 N SING N N 22 PHE_LFZW H3 N SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PHE_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C(Cc1ccccc1)[NH3+] PHE_LFZW InChI InChI 1.01 InChI=1/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/t8-/m0/s1 PHE_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1ccccc1)C([O-])=O PHE_LFZW SMILES CACTVS 3.341 [NH3+][CH](Cc1ccccc1)C([O-])=O PHE_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H](C(=O)[O-])[NH3+] PHE_LFZW SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PHE_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-phenylpropanoate PHE_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-phenyl-propanoate # # data_PHE_LL # _chem_comp.id PHE_LL _chem_comp.name "L-PHENYLALANINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H9 N O" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.174 _chem_comp.one_letter_code F _chem_comp.three_letter_code PHE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PHE_LL N N N -1 1 N N N 3.260 22.302 6.000 1.574 1.280 0.642 1 PHE_LL CA CA C 0 1 N N S 4.252 21.272 5.710 1.682 -0.106 0.168 2 PHE_LL C C C -1 1 N N N 5.559 21.899 5.229 3.088 -0.365 -0.311 3 PHE_LL O O O 0 1 N N N 5.836 21.838 4.012 4.017 -0.244 0.451 4 PHE_LL CB CB C 0 1 N N N 3.708 20.298 4.656 0.702 -0.329 -0.986 5 PHE_LL CG CG C 0 1 Y N N 4.596 19.106 4.406 -0.710 -0.190 -0.479 6 PHE_LL CD1 CD1 C 0 1 Y N N 5.077 18.339 5.467 -1.332 1.044 -0.494 7 PHE_LL CD2 CD2 C 0 1 Y N N 4.927 18.732 3.109 -1.386 -1.298 -0.004 8 PHE_LL CE1 CE1 C 0 1 Y N N 5.874 17.219 5.237 -2.628 1.172 -0.029 9 PHE_LL CE2 CE2 C 0 1 Y N N 5.718 17.618 2.867 -2.682 -1.171 0.462 10 PHE_LL CZ CZ C 0 1 Y N N 6.193 16.860 3.932 -3.302 0.064 0.451 11 PHE_LL H H H 0 1 N N N 3.033 22.282 6.974 1.790 1.933 -0.097 12 PHE_LL HA HA H 0 1 N N N 4.458 20.716 6.637 1.444 -0.789 0.983 13 PHE_LL HB2 1HB H 0 1 N N N 2.733 19.928 5.007 0.883 0.412 -1.765 14 PHE_LL HB3 2HB H 0 1 N N N 3.643 20.854 3.709 0.844 -1.329 -1.396 15 PHE_LL HD1 HD1 H 0 1 N N N 4.828 18.617 6.481 -0.806 1.910 -0.869 16 PHE_LL HD2 HD2 H 0 1 N N N 4.563 19.317 2.277 -0.902 -2.264 0.004 17 PHE_LL HE1 HE1 H 0 1 N N N 6.241 16.634 6.067 -3.113 2.136 -0.040 18 PHE_LL HE2 HE2 H 0 1 N N N 5.965 17.340 1.853 -3.210 -2.037 0.833 19 PHE_LL HZ HZ H 0 1 N N N 6.809 15.993 3.746 -4.313 0.164 0.815 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHE_LL N CA SING N N 1 PHE_LL N H SING N N 2 PHE_LL CA C SING N N 3 PHE_LL CA CB SING N N 4 PHE_LL CA HA SING N N 5 PHE_LL C O DOUB N N 6 PHE_LL CB CG SING N N 7 PHE_LL CB HB2 SING N N 8 PHE_LL CB HB3 SING N N 9 PHE_LL CG CD1 DOUB Y N 10 PHE_LL CG CD2 SING Y N 11 PHE_LL CD1 CE1 SING Y N 12 PHE_LL CD1 HD1 SING N N 13 PHE_LL CD2 CE2 DOUB Y N 14 PHE_LL CD2 HD2 SING N N 15 PHE_LL CE1 CZ DOUB Y N 16 PHE_LL CE1 HE1 SING N N 17 PHE_LL CE2 CZ SING Y N 18 PHE_LL CE2 HE2 SING N N 19 PHE_LL CZ HZ SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PHE_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])Cc1ccccc1 PHE_LL InChI InChI 1.01 InChI=1/C9H9NO/c10-9(7-11)6-8-4-2-1-3-5-8/h1-5,9-10H,6H2/q-2/t9-/m0/s1 PHE_LL SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1ccccc1)[C-]=O PHE_LL SMILES CACTVS 3.341 [NH-][CH](Cc1ccccc1)[C-]=O PHE_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H]([C-]=O)[NH-] PHE_LL SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PHE_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-benzyl-2-oxoethan-2-idyl]azanide PHE_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-oxo-3-phenyl-propan-2-yl]azanide # # data_PHE_LSN3 # _chem_comp.id PHE_LSN3 _chem_comp.name "L-PHENYLALANINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H11 N O" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 149.190 _chem_comp.one_letter_code F _chem_comp.three_letter_code PHE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PHE_LSN3 N N N 1 1 N N N 3.260 22.302 6.000 -1.564 1.277 -0.564 1 PHE_LSN3 CA CA C 0 1 N N S 4.252 21.272 5.710 -1.663 -0.129 -0.150 2 PHE_LSN3 C C C -1 1 N N N 5.559 21.899 5.229 -3.065 -0.416 0.323 3 PHE_LSN3 O O O 0 1 N N N 5.836 21.838 4.012 -3.998 -0.268 -0.429 4 PHE_LSN3 CB CB C 0 1 N N N 3.708 20.298 4.656 -0.676 -0.395 0.989 5 PHE_LSN3 CG CG C 0 1 Y N N 4.596 19.106 4.406 0.733 -0.226 0.482 6 PHE_LSN3 CD1 CD1 C 0 1 Y N N 5.077 18.339 5.467 1.348 1.010 0.548 7 PHE_LSN3 CD2 CD2 C 0 1 Y N N 4.927 18.732 3.109 1.413 -1.309 -0.043 8 PHE_LSN3 CE1 CE1 C 0 1 Y N N 5.874 17.219 5.237 2.641 1.165 0.083 9 PHE_LSN3 CE2 CE2 C 0 1 Y N N 5.718 17.618 2.867 2.705 -1.155 -0.508 10 PHE_LSN3 CZ CZ C 0 1 Y N N 6.193 16.860 3.932 3.318 0.083 -0.447 11 PHE_LSN3 HA HA H 0 1 N N N 4.458 20.716 6.637 -1.425 -0.774 -0.995 12 PHE_LSN3 HB2 1HB H 0 1 N N N 2.733 19.928 5.007 -0.858 0.311 1.799 13 PHE_LSN3 HB3 2HB H 0 1 N N N 3.643 20.854 3.709 -0.811 -1.412 1.356 14 PHE_LSN3 HD1 HD1 H 0 1 N N N 4.828 18.617 6.481 0.818 1.855 0.962 15 PHE_LSN3 HD2 HD2 H 0 1 N N N 4.563 19.317 2.277 0.934 -2.276 -0.090 16 PHE_LSN3 HE1 HE1 H 0 1 N N N 6.241 16.634 6.067 3.121 2.131 0.133 17 PHE_LSN3 HE2 HE2 H 0 1 N N N 5.965 17.340 1.853 3.237 -2.001 -0.918 18 PHE_LSN3 HZ HZ H 0 1 N N N 6.809 15.993 3.746 4.328 0.204 -0.811 19 PHE_LSN3 H1 H1 H 0 1 N N N 3.033 22.282 6.974 -0.626 1.470 -0.881 20 PHE_LSN3 H2 H2 H 0 1 N N N 3.632 23.199 5.763 -2.215 1.453 -1.315 21 PHE_LSN3 H3 H3 H 0 1 N N N 2.435 22.130 5.462 -1.785 1.875 0.218 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHE_LSN3 N CA SING N N 1 PHE_LSN3 CA C SING N N 2 PHE_LSN3 CA CB SING N N 3 PHE_LSN3 CA HA SING N N 4 PHE_LSN3 C O DOUB N N 5 PHE_LSN3 CB CG SING N N 6 PHE_LSN3 CB HB2 SING N N 7 PHE_LSN3 CB HB3 SING N N 8 PHE_LSN3 CG CD1 DOUB Y N 9 PHE_LSN3 CG CD2 SING Y N 10 PHE_LSN3 CD1 CE1 SING Y N 11 PHE_LSN3 CD1 HD1 SING N N 12 PHE_LSN3 CD2 CE2 DOUB Y N 13 PHE_LSN3 CD2 HD2 SING N N 14 PHE_LSN3 CE1 CZ DOUB Y N 15 PHE_LSN3 CE1 HE1 SING N N 16 PHE_LSN3 CE2 CZ SING Y N 17 PHE_LSN3 CE2 HE2 SING N N 18 PHE_LSN3 CZ HZ SING N N 19 PHE_LSN3 H1 N SING N N 20 PHE_LSN3 H2 N SING N N 21 PHE_LSN3 H3 N SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PHE_LSN3 SMILES ACDLabs 10.04 O=[C-]C(Cc1ccccc1)[NH3+] PHE_LSN3 InChI InChI 1.01 InChI=1/C9H10NO/c10-9(7-11)6-8-4-2-1-3-5-8/h1-5,9H,6,10H2/q-1/p+1/t9-/m0/s1 PHE_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1ccccc1)[C-]=O PHE_LSN3 SMILES CACTVS 3.341 [NH3+][CH](Cc1ccccc1)[C-]=O PHE_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H]([C-]=O)[NH3+] PHE_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PHE_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-1-oxo-3-phenylpropan-1-ide PHE_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-oxo-3-phenyl-propan-2-yl]azanium # # data_PRO_LEO2 # _chem_comp.id PRO_LEO2 _chem_comp.name "L-PROLINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H7 N O2" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-11-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 113.115 _chem_comp.one_letter_code P _chem_comp.three_letter_code PRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PRO_LEO2 N N N -1 1 N N N 39.165 37.768 82.966 0.746 1.147 -0.174 1 PRO_LEO2 CA CA C 0 1 N N S 38.579 38.700 82.008 -0.023 -0.072 -0.533 2 PRO_LEO2 C C C 0 1 N N N 37.217 39.126 82.515 -1.445 0.041 -0.046 3 PRO_LEO2 O O O 0 1 N N N 36.256 38.332 82.370 -1.814 1.052 0.527 4 PRO_LEO2 CB CB C 0 1 N N N 38.491 37.874 80.720 0.706 -1.221 0.197 5 PRO_LEO2 CG CG C 0 1 N N N 38.311 36.445 81.200 2.145 -0.709 0.413 6 PRO_LEO2 CD CD C 0 1 N N N 38.958 36.358 82.579 2.164 0.706 -0.205 7 PRO_LEO2 OXT OXT O -1 1 N Y N 37.131 40.263 83.047 -2.225 -0.878 -0.224 8 PRO_LEO2 HA HA H 0 1 N N N 39.152 39.626 81.852 -0.003 -0.231 -1.611 9 PRO_LEO2 HB2 1HB H 0 1 N N N 37.642 38.195 80.099 0.229 -1.424 1.156 10 PRO_LEO2 HB3 2HB H 0 1 N N N 39.383 37.992 80.087 0.712 -2.118 -0.421 11 PRO_LEO2 HG2 1HG H 0 1 N N N 37.242 36.194 81.262 2.374 -0.660 1.478 12 PRO_LEO2 HG3 2HG H 0 1 N N N 38.776 35.734 80.502 2.858 -1.355 -0.099 13 PRO_LEO2 HD2 1HD H 0 1 N N N 39.911 35.810 82.540 2.529 0.668 -1.231 14 PRO_LEO2 HD3 2HD H 0 1 N N N 38.336 35.810 83.302 2.783 1.374 0.395 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRO_LEO2 N CA SING N N 1 PRO_LEO2 N CD SING N N 2 PRO_LEO2 CA C SING N N 3 PRO_LEO2 CA CB SING N N 4 PRO_LEO2 CA HA SING N N 5 PRO_LEO2 C O DOUB N N 6 PRO_LEO2 C OXT SING N N 7 PRO_LEO2 CB CG SING N N 8 PRO_LEO2 CB HB2 SING N N 9 PRO_LEO2 CB HB3 SING N N 10 PRO_LEO2 CG CD SING N N 11 PRO_LEO2 CG HG2 SING N N 12 PRO_LEO2 CG HG3 SING N N 13 PRO_LEO2 CD HD2 SING N N 14 PRO_LEO2 CD HD3 SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRO_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C1[N-]CCC1 PRO_LEO2 InChI InChI 1.01 InChI=1/C5H8NO2/c7-5(8)4-2-1-3-6-4/h4H,1-3H2,(H,7,8)/q-1/p-1/t4-/m0/s1 PRO_LEO2 SMILES_CANONICAL CACTVS 3.341 [O-]C(=O)[C@@H]1CCC[N-]1 PRO_LEO2 SMILES CACTVS 3.341 [O-]C(=O)[CH]1CCC[N-]1 PRO_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1C[C@H]([N-]C1)C(=O)[O-] PRO_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C1CC([N-]C1)C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRO_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-pyrrolidin-1-ide-2-carboxylate PRO_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-pyrrolidin-1-ide-2-carboxylate # # data_PRO_LEO2H # _chem_comp.id PRO_LEO2H _chem_comp.name "L-PROLINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N O2" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-11-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 114.123 _chem_comp.one_letter_code P _chem_comp.three_letter_code PRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PRO_LEO2H N N N -1 1 N N N 39.165 37.768 82.966 0.815 1.114 -0.311 1 PRO_LEO2H CA CA C 0 1 N N S 38.579 38.700 82.008 0.003 -0.114 -0.513 2 PRO_LEO2H C C C 0 1 N N N 37.217 39.126 82.515 -1.402 0.096 -0.012 3 PRO_LEO2H O O O 0 1 N N N 36.256 38.332 82.370 -1.641 0.996 0.757 4 PRO_LEO2H CB CB C 0 1 N N N 38.491 37.874 80.720 0.719 -1.195 0.325 5 PRO_LEO2H CG CG C 0 1 N N N 38.311 36.445 81.200 2.176 -0.706 0.451 6 PRO_LEO2H CD CD C 0 1 N N N 38.958 36.358 82.579 2.219 0.630 -0.322 7 PRO_LEO2H OXT OXT O 0 1 N Y N 37.131 40.263 83.047 -2.389 -0.718 -0.420 8 PRO_LEO2H HA HA H 0 1 N N N 39.152 39.626 81.852 -0.007 -0.393 -1.567 9 PRO_LEO2H HB2 1HB H 0 1 N N N 37.642 38.195 80.099 0.259 -1.276 1.310 10 PRO_LEO2H HB3 2HB H 0 1 N N N 39.383 37.992 80.087 0.685 -2.156 -0.189 11 PRO_LEO2H HG2 1HG H 0 1 N N N 37.242 36.194 81.262 2.432 -0.546 1.498 12 PRO_LEO2H HG3 2HG H 0 1 N N N 38.776 35.734 80.502 2.858 -1.427 -0.001 13 PRO_LEO2H HD2 1HD H 0 1 N N N 39.911 35.810 82.540 2.557 0.466 -1.345 14 PRO_LEO2H HD3 2HD H 0 1 N N N 38.336 35.810 83.302 2.871 1.341 0.185 15 PRO_LEO2H HXT HXT H 0 1 N Y N 36.234 40.420 83.317 -3.274 -0.544 -0.071 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRO_LEO2H N CA SING N N 1 PRO_LEO2H N CD SING N N 2 PRO_LEO2H CA C SING N N 3 PRO_LEO2H CA CB SING N N 4 PRO_LEO2H CA HA SING N N 5 PRO_LEO2H C O DOUB N N 6 PRO_LEO2H C OXT SING N N 7 PRO_LEO2H CB CG SING N N 8 PRO_LEO2H CB HB2 SING N N 9 PRO_LEO2H CB HB3 SING N N 10 PRO_LEO2H CG CD SING N N 11 PRO_LEO2H CG HG2 SING N N 12 PRO_LEO2H CG HG3 SING N N 13 PRO_LEO2H CD HD2 SING N N 14 PRO_LEO2H CD HD3 SING N N 15 PRO_LEO2H OXT HXT SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRO_LEO2H SMILES ACDLabs 10.04 O=C(O)C1[N-]CCC1 PRO_LEO2H InChI InChI 1.01 InChI=1/C5H8NO2/c7-5(8)4-2-1-3-6-4/h4H,1-3H2,(H,7,8)/q-1/t4-/m0/s1 PRO_LEO2H SMILES_CANONICAL CACTVS 3.341 OC(=O)[C@@H]1CCC[N-]1 PRO_LEO2H SMILES CACTVS 3.341 OC(=O)[CH]1CCC[N-]1 PRO_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1C[C@H]([N-]C1)C(=O)O PRO_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C1CC([N-]C1)C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRO_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-carboxypyrrolidin-1-ide PRO_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-pyrrolidin-1-ide-2-carboxylic acid" # # data_PRO_LFOH # _chem_comp.id PRO_LFOH _chem_comp.name "L-PROLINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O2" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-11-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 115.130 _chem_comp.one_letter_code P _chem_comp.three_letter_code PRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PRO_LFOH N N N 0 1 N N N 39.165 37.768 82.966 0.815 1.105 -0.261 1 PRO_LFOH CA CA C 0 1 N N S 38.579 38.700 82.008 -0.002 -0.112 -0.509 2 PRO_LFOH C C C 0 1 N N N 37.217 39.126 82.515 -1.407 0.087 -0.003 3 PRO_LFOH O O O 0 1 N N N 36.256 38.332 82.370 -1.644 0.961 0.797 4 PRO_LFOH CB CB C 0 1 N N N 38.491 37.874 80.720 0.706 -1.225 0.293 5 PRO_LFOH CG CG C 0 1 N N N 38.311 36.445 81.200 2.166 -0.748 0.439 6 PRO_LFOH CD CD C 0 1 N N N 38.958 36.358 82.579 2.217 0.614 -0.286 7 PRO_LFOH OXT OXT O 0 1 N Y N 37.131 40.263 83.047 -2.397 -0.707 -0.441 8 PRO_LFOH H2 HT3 H 0 1 N Y N 40.148 37.942 83.017 0.661 1.796 -0.979 9 PRO_LFOH HA HA H 0 1 N N N 39.152 39.626 81.852 -0.011 -0.353 -1.571 10 PRO_LFOH HB2 1HB H 0 1 N N N 37.642 38.195 80.099 0.244 -1.338 1.273 11 PRO_LFOH HB3 2HB H 0 1 N N N 39.383 37.992 80.087 0.669 -2.167 -0.255 12 PRO_LFOH HG2 1HG H 0 1 N N N 37.242 36.194 81.262 2.420 -0.626 1.492 13 PRO_LFOH HG3 2HG H 0 1 N N N 38.776 35.734 80.502 2.845 -1.456 -0.036 14 PRO_LFOH HD2 1HD H 0 1 N N N 39.911 35.810 82.540 2.556 0.485 -1.314 15 PRO_LFOH HD3 2HD H 0 1 N N N 38.336 35.810 83.302 2.871 1.304 0.247 16 PRO_LFOH HXT HXT H 0 1 N Y N 36.234 40.420 83.317 -3.282 -0.541 -0.089 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRO_LFOH N CA SING N N 1 PRO_LFOH N CD SING N N 2 PRO_LFOH N H2 SING N N 3 PRO_LFOH CA C SING N N 4 PRO_LFOH CA CB SING N N 5 PRO_LFOH CA HA SING N N 6 PRO_LFOH C O DOUB N N 7 PRO_LFOH C OXT SING N N 8 PRO_LFOH CB CG SING N N 9 PRO_LFOH CB HB2 SING N N 10 PRO_LFOH CB HB3 SING N N 11 PRO_LFOH CG CD SING N N 12 PRO_LFOH CG HG2 SING N N 13 PRO_LFOH CG HG3 SING N N 14 PRO_LFOH CD HD2 SING N N 15 PRO_LFOH CD HD3 SING N N 16 PRO_LFOH OXT HXT SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRO_LFOH SMILES ACDLabs 10.04 O=C(O)C1NCCC1 PRO_LFOH InChI InChI 1.01 InChI=1/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1 PRO_LFOH SMILES_CANONICAL CACTVS 3.341 OC(=O)[C@@H]1CCCN1 PRO_LFOH SMILES CACTVS 3.341 OC(=O)[CH]1CCCN1 PRO_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1C[C@H](NC1)C(=O)O PRO_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C1CC(NC1)C(=O)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRO_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-proline PRO_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-pyrrolidine-2-carboxylic acid" # # data_PRO_LFZW # _chem_comp.id PRO_LFZW _chem_comp.name "L-PROLINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O2" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-11-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 115.130 _chem_comp.one_letter_code P _chem_comp.three_letter_code PRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PRO_LFZW N N N 1 1 N N N 39.165 37.768 82.966 0.748 1.099 -0.233 1 PRO_LFZW CA CA C 0 1 N N S 38.579 38.700 82.008 -0.037 -0.127 -0.526 2 PRO_LFZW C C C 0 1 N N N 37.217 39.126 82.515 -1.454 0.027 -0.036 3 PRO_LFZW O O O 0 1 N N N 36.256 38.332 82.370 -2.299 -0.796 -0.345 4 PRO_LFZW CB CB C 0 1 N N N 38.491 37.874 80.720 0.683 -1.247 0.255 5 PRO_LFZW CG CG C 0 1 N N N 38.311 36.445 81.200 2.130 -0.742 0.437 6 PRO_LFZW CD CD C 0 1 N N N 38.958 36.358 82.579 2.161 0.640 -0.250 7 PRO_LFZW OXT OXT O -1 1 N Y N 37.131 40.263 83.047 -1.756 0.975 0.669 8 PRO_LFZW H2 HT3 H 0 1 N Y N 40.148 37.942 83.017 0.595 1.795 -0.947 9 PRO_LFZW HA HA H 0 1 N N N 39.152 39.626 81.852 -0.027 -0.340 -1.595 10 PRO_LFZW HB2 1HB H 0 1 N N N 37.642 38.195 80.099 0.210 -1.396 1.226 11 PRO_LFZW HB3 2HB H 0 1 N N N 39.383 37.992 80.087 0.675 -2.174 -0.317 12 PRO_LFZW HG2 1HG H 0 1 N N N 37.242 36.194 81.262 2.367 -0.644 1.496 13 PRO_LFZW HG3 2HG H 0 1 N N N 38.776 35.734 80.502 2.831 -1.422 -0.048 14 PRO_LFZW HD2 1HD H 0 1 N N N 39.911 35.810 82.540 2.518 0.547 -1.276 15 PRO_LFZW HD3 2HD H 0 1 N N N 38.336 35.810 83.302 2.792 1.329 0.311 16 PRO_LFZW H3 H3 H 0 1 N N N 38.716 37.913 83.848 0.507 1.464 0.676 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRO_LFZW N CA SING N N 1 PRO_LFZW N CD SING N N 2 PRO_LFZW N H2 SING N N 3 PRO_LFZW CA C SING N N 4 PRO_LFZW CA CB SING N N 5 PRO_LFZW CA HA SING N N 6 PRO_LFZW C O DOUB N N 7 PRO_LFZW C OXT SING N N 8 PRO_LFZW CB CG SING N N 9 PRO_LFZW CB HB2 SING N N 10 PRO_LFZW CB HB3 SING N N 11 PRO_LFZW CG CD SING N N 12 PRO_LFZW CG HG2 SING N N 13 PRO_LFZW CG HG3 SING N N 14 PRO_LFZW CD HD2 SING N N 15 PRO_LFZW CD HD3 SING N N 16 PRO_LFZW H3 N SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRO_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C1[NH2+]CCC1 PRO_LFZW InChI InChI 1.01 InChI=1/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1 PRO_LFZW SMILES_CANONICAL CACTVS 3.341 [O-]C(=O)[C@@H]1CCC[NH2+]1 PRO_LFZW SMILES CACTVS 3.341 [O-]C(=O)[CH]1CCC[NH2+]1 PRO_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1C[C@H]([NH2+]C1)C(=O)[O-] PRO_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C1CC([NH2+]C1)C(=O)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRO_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-pyrrolidinium-2-carboxylate PRO_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-pyrrolidin-1-ium-2-carboxylate # # data_PRO_LL # _chem_comp.id PRO_LL _chem_comp.name "L-PROLINE - LINKING EMBEDDED" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H7 N O" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-11-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 97.115 _chem_comp.one_letter_code P _chem_comp.three_letter_code PRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PRO_LL N N N -1 1 N N N 39.165 37.768 82.966 0.208 1.083 0.154 1 PRO_LL CA CA C 0 1 N N S 38.579 38.700 82.008 -0.334 -0.178 -0.414 2 PRO_LL C C C -1 1 N N N 37.217 39.126 82.515 -1.677 -0.493 0.192 3 PRO_LL O O O 0 1 N N N 36.256 38.332 82.370 -2.600 0.272 0.047 4 PRO_LL CB CB C 0 1 N N N 38.491 37.874 80.720 0.699 -1.257 -0.024 5 PRO_LL CG CG C 0 1 N N N 38.311 36.445 81.200 2.019 -0.487 0.193 6 PRO_LL CD CD C 0 1 N N N 38.958 36.358 82.579 1.671 0.991 -0.085 7 PRO_LL HA HA H 0 1 N N N 39.152 39.626 81.852 -0.416 -0.103 -1.499 8 PRO_LL HB2 1HB H 0 1 N N N 37.642 38.195 80.099 0.396 -1.756 0.896 9 PRO_LL HB3 2HB H 0 1 N N N 39.383 37.992 80.087 0.812 -1.982 -0.830 10 PRO_LL HG2 1HG H 0 1 N N N 37.242 36.194 81.262 2.364 -0.609 1.219 11 PRO_LL HG3 2HG H 0 1 N N N 38.776 35.734 80.502 2.779 -0.835 -0.507 12 PRO_LL HD2 1HD H 0 1 N N N 39.911 35.810 82.540 1.905 1.249 -1.118 13 PRO_LL HD3 2HD H 0 1 N N N 38.336 35.810 83.302 2.210 1.644 0.602 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRO_LL N CA SING N N 1 PRO_LL N CD SING N N 2 PRO_LL CA C SING N N 3 PRO_LL CA CB SING N N 4 PRO_LL CA HA SING N N 5 PRO_LL C O DOUB N N 6 PRO_LL CB CG SING N N 7 PRO_LL CB HB2 SING N N 8 PRO_LL CB HB3 SING N N 9 PRO_LL CG CD SING N N 10 PRO_LL CG HG2 SING N N 11 PRO_LL CG HG3 SING N N 12 PRO_LL CD HD2 SING N N 13 PRO_LL CD HD3 SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRO_LL SMILES ACDLabs 10.04 O=[C-]C1[N-]CCC1 PRO_LL InChI InChI 1.01 InChI=1/C5H7NO/c7-4-5-2-1-3-6-5/h5H,1-3H2/q-2/t5-/m0/s1 PRO_LL SMILES_CANONICAL CACTVS 3.341 O=[C-][C@@H]1CCC[N-]1 PRO_LL SMILES CACTVS 3.341 O=[C-][CH]1CCC[N-]1 PRO_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1C[C@H]([N-]C1)[C-]=O PRO_LL SMILES "OpenEye OEToolkits" 1.5.0 C1CC([N-]C1)[C-]=O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRO_LL "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-(oxomethanidyl)pyrrolidin-1-ide PRO_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-pyrrolidin-1-id-2-yl]methanone # # data_PRO_LSN3 # _chem_comp.id PRO_LSN3 _chem_comp.name "L-PROLINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-11-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 99.131 _chem_comp.one_letter_code P _chem_comp.three_letter_code PRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal PRO_LSN3 N N N 1 1 N N N 39.165 37.768 82.966 0.668 1.171 0.150 1 PRO_LSN3 CA CA C 0 1 N N S 38.579 38.700 82.008 -0.339 0.216 -0.381 2 PRO_LSN3 C C C -1 1 N N N 37.217 39.126 82.515 -1.678 0.449 0.271 3 PRO_LSN3 O O O 0 1 N N N 36.256 38.332 82.370 -2.625 -0.235 -0.035 4 PRO_LSN3 CB CB C 0 1 N N N 38.491 37.874 80.720 0.209 -1.176 -0.004 5 PRO_LSN3 CG CG C 0 1 N N N 38.311 36.445 81.200 1.730 -0.978 0.161 6 PRO_LSN3 CD CD C 0 1 N N N 38.958 36.358 82.579 1.973 0.519 -0.130 7 PRO_LSN3 H2 HT3 H 0 1 N Y N 40.148 37.942 83.017 0.605 2.055 -0.332 8 PRO_LSN3 HA HA H 0 1 N N N 39.152 39.626 81.852 -0.422 0.314 -1.463 9 PRO_LSN3 HB2 1HB H 0 1 N N N 37.642 38.195 80.099 -0.232 -1.516 0.933 10 PRO_LSN3 HB3 2HB H 0 1 N N N 39.383 37.992 80.087 0.005 -1.892 -0.800 11 PRO_LSN3 HG2 1HG H 0 1 N N N 37.242 36.194 81.262 2.035 -1.220 1.179 12 PRO_LSN3 HG3 2HG H 0 1 N N N 38.776 35.734 80.502 2.272 -1.596 -0.554 13 PRO_LSN3 HD2 1HD H 0 1 N N N 39.911 35.810 82.540 2.253 0.662 -1.174 14 PRO_LSN3 HD3 2HD H 0 1 N N N 38.336 35.810 83.302 2.745 0.914 0.530 15 PRO_LSN3 H3 H3 H 0 1 N N N 38.716 37.913 83.848 0.544 1.299 1.143 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRO_LSN3 N CA SING N N 1 PRO_LSN3 N CD SING N N 2 PRO_LSN3 N H2 SING N N 3 PRO_LSN3 CA C SING N N 4 PRO_LSN3 CA CB SING N N 5 PRO_LSN3 CA HA SING N N 6 PRO_LSN3 C O DOUB N N 7 PRO_LSN3 CB CG SING N N 8 PRO_LSN3 CB HB2 SING N N 9 PRO_LSN3 CB HB3 SING N N 10 PRO_LSN3 CG CD SING N N 11 PRO_LSN3 CG HG2 SING N N 12 PRO_LSN3 CG HG3 SING N N 13 PRO_LSN3 CD HD2 SING N N 14 PRO_LSN3 CD HD3 SING N N 15 PRO_LSN3 H3 N SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRO_LSN3 SMILES ACDLabs 10.04 O=[C-]C1[NH2+]CCC1 PRO_LSN3 InChI InChI 1.01 InChI=1/C5H8NO/c7-4-5-2-1-3-6-5/h5-6H,1-3H2/q-1/p+1/t5-/m0/s1 PRO_LSN3 SMILES_CANONICAL CACTVS 3.341 O=[C-][C@@H]1CCC[NH2+]1 PRO_LSN3 SMILES CACTVS 3.341 O=[C-][CH]1CCC[NH2+]1 PRO_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1C[C@H]([NH2+]C1)[C-]=O PRO_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C1CC([NH2+]C1)[C-]=O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRO_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 oxo[(2S)-pyrrolidinium-2-yl]methanide PRO_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-pyrrolidin-1-ium-2-yl]methanone # # data_SER_LEO2 # _chem_comp.id SER_LEO2 _chem_comp.name "L-SERINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 103.077 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LEO2 N N N -1 1 N N N 88.198 -7.658 -9.979 -0.439 1.626 0.304 1 SER_LEO2 CA CA C 0 1 N N S 87.782 -7.276 -11.358 -0.230 0.179 0.452 2 SER_LEO2 C C C 0 1 N N N 88.571 -6.062 -11.818 1.182 -0.167 0.055 3 SER_LEO2 O O O 0 1 N N N 89.008 -5.296 -10.944 1.621 -1.283 0.275 4 SER_LEO2 CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.212 -0.573 -0.449 5 SER_LEO2 OG OG O 0 1 N N N 85.543 -8.096 -10.989 -2.548 -0.336 0.001 6 SER_LEO2 OXT OXT O -1 1 N Y N 88.737 -5.884 -13.035 1.885 0.669 -0.486 7 SER_LEO2 H H H 0 1 N N N 89.194 -7.744 -9.942 -0.291 1.917 -0.651 8 SER_LEO2 HA HA H 0 1 N N N 87.986 -8.118 -12.036 -0.396 -0.107 1.490 9 SER_LEO2 HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.106 -0.221 -1.475 10 SER_LEO2 HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -0.998 -1.641 -0.407 11 SER_LEO2 HG HG H 0 1 N N N 85.376 -8.650 -11.742 -3.225 -0.784 -0.525 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LEO2 N CA SING N N 1 SER_LEO2 N H SING N N 2 SER_LEO2 CA C SING N N 3 SER_LEO2 CA CB SING N N 4 SER_LEO2 CA HA SING N N 5 SER_LEO2 C O DOUB N N 6 SER_LEO2 C OXT SING N N 7 SER_LEO2 CB OG SING N N 8 SER_LEO2 CB HB2 SING N N 9 SER_LEO2 CB HB3 SING N N 10 SER_LEO2 OG HG SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CO SER_LEO2 InChI InChI 1.01 InChI=1/C3H6NO3/c4-2(1-5)3(6)7/h2,4-5H,1H2,(H,6,7)/q-1/p-1/t2-/m0/s1 SER_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CO)C([O-])=O SER_LEO2 SMILES CACTVS 3.341 [NH-][CH](CO)C([O-])=O SER_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH-])O SER_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-hydroxypropanoate SER_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-hydroxy-propanoate # # data_SER_LEO2_DHG # _chem_comp.id SER_LEO2_DHG _chem_comp.name "L-SERINE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H4 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 102.069 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LEO2_DHG N N N -1 1 N N N 88.198 -7.658 -9.979 -0.479 1.632 0.194 1 SER_LEO2_DHG CA CA C 0 1 N N S 87.782 -7.276 -11.358 -0.265 0.198 0.433 2 SER_LEO2_DHG C C C 0 1 N N N 88.571 -6.062 -11.818 1.150 -0.167 0.067 3 SER_LEO2_DHG O O O 0 1 N N N 89.008 -5.296 -10.944 1.911 0.688 -0.354 4 SER_LEO2_DHG CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.239 -0.613 -0.424 5 SER_LEO2_DHG OG OG O -1 1 N N N 85.543 -8.096 -10.989 -2.578 -0.354 0.002 6 SER_LEO2_DHG OXT OXT O -1 1 N Y N 88.737 -5.884 -13.035 1.535 -1.317 0.193 7 SER_LEO2_DHG H H H 0 1 N N N 89.194 -7.744 -9.942 -0.325 1.863 -0.776 8 SER_LEO2_DHG HA HA H 0 1 N N N 87.986 -8.118 -12.036 -0.437 -0.024 1.487 9 SER_LEO2_DHG HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.128 -0.326 -1.470 10 SER_LEO2_DHG HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -1.022 -1.675 -0.314 11 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LEO2_DHG N CA SING N N 1 SER_LEO2_DHG N H SING N N 2 SER_LEO2_DHG CA C SING N N 3 SER_LEO2_DHG CA CB SING N N 4 SER_LEO2_DHG CA HA SING N N 5 SER_LEO2_DHG C O DOUB N N 6 SER_LEO2_DHG C OXT SING N N 7 SER_LEO2_DHG CB OG SING N N 8 SER_LEO2_DHG CB HB2 SING N N 9 SER_LEO2_DHG CB HB3 SING N N 10 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LEO2_DHG SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])C[O-] SER_LEO2_DHG InChI InChI 1.01 InChI=1/C3H5NO3/c4-2(1-5)3(6)7/h2,4H,1H2,(H,6,7)/q-2/p-1/t2-/m0/s1 SER_LEO2_DHG SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](C[O-])C([O-])=O SER_LEO2_DHG SMILES CACTVS 3.341 [NH-][CH](C[O-])C([O-])=O SER_LEO2_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH-])[O-] SER_LEO2_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LEO2_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-oxidopropanoate SER_LEO2_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-oxido-propanoate # # data_SER_LEO2H # _chem_comp.id SER_LEO2H _chem_comp.name "L-SERINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 104.085 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LEO2H N N N -1 1 N N N 88.198 -7.658 -9.979 -0.563 1.598 0.433 1 SER_LEO2H CA CA C 0 1 N N S 87.782 -7.276 -11.358 -0.269 0.159 0.461 2 SER_LEO2H C C C 0 1 N N N 88.571 -6.062 -11.818 1.156 -0.071 0.027 3 SER_LEO2H O O O 0 1 N N N 89.008 -5.296 -10.944 1.739 0.776 -0.607 4 SER_LEO2H CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.216 -0.574 -0.491 5 SER_LEO2H OG OG O 0 1 N N N 85.543 -8.096 -10.989 -2.558 -0.453 -0.015 6 SER_LEO2H OXT OXT O 0 1 N Y N 88.737 -5.884 -13.035 1.777 -1.218 0.345 7 SER_LEO2H H H H 0 1 N N N 89.194 -7.744 -9.942 -0.443 1.974 -0.496 8 SER_LEO2H HA HA H 0 1 N N N 87.986 -8.118 -12.036 -0.406 -0.220 1.473 9 SER_LEO2H HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.143 -0.134 -1.486 10 SER_LEO2H HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -0.941 -1.627 -0.538 11 SER_LEO2H HG HG H 0 1 N N N 85.376 -8.650 -11.742 -3.214 -0.894 -0.571 12 SER_LEO2H HXT HXT H 0 1 N Y N 89.238 -5.089 -13.174 2.691 -1.320 0.045 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LEO2H N CA SING N N 1 SER_LEO2H N H SING N N 2 SER_LEO2H CA C SING N N 3 SER_LEO2H CA CB SING N N 4 SER_LEO2H CA HA SING N N 5 SER_LEO2H C O DOUB N N 6 SER_LEO2H C OXT SING N N 7 SER_LEO2H CB OG SING N N 8 SER_LEO2H CB HB2 SING N N 9 SER_LEO2H CB HB3 SING N N 10 SER_LEO2H OG HG SING N N 11 SER_LEO2H OXT HXT SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])CO SER_LEO2H InChI InChI 1.01 InChI=1/C3H6NO3/c4-2(1-5)3(6)7/h2,4-5H,1H2,(H,6,7)/q-1/t2-/m0/s1 SER_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CO)C(O)=O SER_LEO2H SMILES CACTVS 3.341 [NH-][CH](CO)C(O)=O SER_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)[NH-])O SER_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-2-hydroxyethyl]azanide SER_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1,3-dihydroxy-1-oxo-propan-2-yl]azanide # # data_SER_LEO2H_DHG # _chem_comp.id SER_LEO2H_DHG _chem_comp.name "L-SERINE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 103.077 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LEO2H_DHG N N N -1 1 N N N 88.198 -7.658 -9.979 -0.625 1.575 0.435 1 SER_LEO2H_DHG CA CA C 0 1 N N S 87.782 -7.276 -11.358 -0.307 0.141 0.454 2 SER_LEO2H_DHG C C C 0 1 N N N 88.571 -6.062 -11.818 1.125 -0.061 0.030 3 SER_LEO2H_DHG O O O 0 1 N N N 89.008 -5.296 -10.944 1.699 0.802 -0.592 4 SER_LEO2H_DHG CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.234 -0.600 -0.512 5 SER_LEO2H_DHG OG OG O -1 1 N N N 85.543 -8.096 -10.989 -2.581 -0.506 -0.045 6 SER_LEO2H_DHG OXT OXT O 0 1 N Y N 88.737 -5.884 -13.035 1.764 -1.199 0.343 7 SER_LEO2H_DHG H H H 0 1 N N N 89.194 -7.744 -9.942 -0.504 1.961 -0.489 8 SER_LEO2H_DHG HA HA H 0 1 N N N 87.986 -8.118 -12.036 -0.445 -0.249 1.462 9 SER_LEO2H_DHG HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.160 -0.151 -1.503 10 SER_LEO2H_DHG HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -0.940 -1.648 -0.566 11 SER_LEO2H_DHG HXT HXT H 0 1 N Y N 89.238 -5.089 -13.174 2.682 -1.283 0.050 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LEO2H_DHG N CA SING N N 1 SER_LEO2H_DHG N H SING N N 2 SER_LEO2H_DHG CA C SING N N 3 SER_LEO2H_DHG CA CB SING N N 4 SER_LEO2H_DHG CA HA SING N N 5 SER_LEO2H_DHG C O DOUB N N 6 SER_LEO2H_DHG C OXT SING N N 7 SER_LEO2H_DHG CB OG SING N N 8 SER_LEO2H_DHG CB HB2 SING N N 9 SER_LEO2H_DHG CB HB3 SING N N 10 SER_LEO2H_DHG OXT HXT SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LEO2H_DHG SMILES ACDLabs 10.04 [O-]CC([NH-])C(=O)O SER_LEO2H_DHG InChI InChI 1.01 InChI=1/C3H5NO3/c4-2(1-5)3(6)7/h2,4H,1H2,(H,6,7)/q-2/t2-/m0/s1 SER_LEO2H_DHG SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](C[O-])C(O)=O SER_LEO2H_DHG SMILES CACTVS 3.341 [NH-][CH](C[O-])C(O)=O SER_LEO2H_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)[NH-])[O-] SER_LEO2H_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LEO2H_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-2-carboxyethanolate SER_LEO2H_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-hydroxy-3-oxo-propan-1-olate # # data_SER_LFOH # _chem_comp.id SER_LFOH _chem_comp.name "L-SERINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 105.093 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LFOH N N N 0 1 N N N 88.198 -7.658 -9.979 0.563 1.591 -0.368 1 SER_LFOH CA CA C 0 1 N N S 87.782 -7.276 -11.358 0.269 0.154 -0.445 2 SER_LFOH C C C 0 1 N N N 88.571 -6.062 -11.818 -1.156 -0.091 -0.020 3 SER_LFOH O O O 0 1 N N N 89.008 -5.296 -10.944 -1.739 0.734 0.643 4 SER_LFOH CB CB C 0 1 N N N 86.286 -6.966 -11.391 1.217 -0.611 0.481 5 SER_LFOH OG OG O 0 1 N N N 85.543 -8.096 -10.989 2.558 -0.473 0.009 6 SER_LFOH OXT OXT O 0 1 N Y N 88.737 -5.884 -13.035 -1.777 -1.226 -0.376 7 SER_LFOH HA HA H 0 1 N N N 87.986 -8.118 -12.036 0.406 -0.190 -1.470 8 SER_LFOH HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 1.143 -0.206 1.491 9 SER_LFOH HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 0.941 -1.665 0.492 10 SER_LFOH HG HG H 0 1 N N N 85.376 -8.650 -11.742 3.215 -0.934 0.550 11 SER_LFOH HXT HXT H 0 1 N Y N 89.238 -5.089 -13.174 -2.691 -1.338 -0.080 12 SER_LFOH H1 H1 H 0 1 N N N 89.194 -7.744 -9.942 -0.006 2.112 -1.018 13 SER_LFOH H2 H2 H 0 1 N N N 87.900 -6.954 -9.334 0.442 1.935 0.573 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LFOH N CA SING N N 1 SER_LFOH CA C SING N N 2 SER_LFOH CA CB SING N N 3 SER_LFOH CA HA SING N N 4 SER_LFOH C O DOUB N N 5 SER_LFOH C OXT SING N N 6 SER_LFOH CB OG SING N N 7 SER_LFOH CB HB2 SING N N 8 SER_LFOH CB HB3 SING N N 9 SER_LFOH OG HG SING N N 10 SER_LFOH OXT HXT SING N N 11 SER_LFOH H1 N SING N N 12 SER_LFOH H2 N SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)CO SER_LFOH InChI InChI 1.01 InChI=1/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1 SER_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CO)C(O)=O SER_LFOH SMILES CACTVS 3.341 N[CH](CO)C(O)=O SER_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)N)O SER_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)N)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-serine SER_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-hydroxy-propanoic acid" # # data_SER_LFOH_DHG # _chem_comp.id SER_LFOH_DHG _chem_comp.name "L-SERINE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED OG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 104.085 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LFOH_DHG N N N 0 1 N N N 88.198 -7.658 -9.979 0.626 1.568 -0.371 1 SER_LFOH_DHG CA CA C 0 1 N N S 87.782 -7.276 -11.358 0.306 0.136 -0.438 2 SER_LFOH_DHG C C C 0 1 N N N 88.571 -6.062 -11.818 -1.126 -0.079 -0.022 3 SER_LFOH_DHG O O O 0 1 N N N 89.008 -5.296 -10.944 -1.699 0.762 0.629 4 SER_LFOH_DHG CB CB C 0 1 N N N 86.286 -6.966 -11.391 1.232 -0.639 0.502 5 SER_LFOH_DHG OG OG O -1 1 N N N 85.543 -8.096 -10.989 2.580 -0.530 0.039 6 SER_LFOH_DHG OXT OXT O 0 1 N Y N 88.737 -5.884 -13.035 -1.766 -1.205 -0.375 7 SER_LFOH_DHG HA HA H 0 1 N N N 87.986 -8.118 -12.036 0.445 -0.220 -1.459 8 SER_LFOH_DHG HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 1.159 -0.224 1.507 9 SER_LFOH_DHG HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 0.937 -1.688 0.519 10 SER_LFOH_DHG HXT HXT H 0 1 N Y N 89.238 -5.089 -13.174 -2.684 -1.298 -0.085 11 SER_LFOH_DHG H1 H1 H 0 1 N N N 89.194 -7.744 -9.942 0.072 2.094 -1.030 12 SER_LFOH_DHG H2 H2 H 0 1 N N N 87.900 -6.954 -9.334 0.505 1.921 0.567 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LFOH_DHG N CA SING N N 1 SER_LFOH_DHG CA C SING N N 2 SER_LFOH_DHG CA CB SING N N 3 SER_LFOH_DHG CA HA SING N N 4 SER_LFOH_DHG C O DOUB N N 5 SER_LFOH_DHG C OXT SING N N 6 SER_LFOH_DHG CB OG SING N N 7 SER_LFOH_DHG CB HB2 SING N N 8 SER_LFOH_DHG CB HB3 SING N N 9 SER_LFOH_DHG OXT HXT SING N N 10 SER_LFOH_DHG H1 N SING N N 11 SER_LFOH_DHG H2 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LFOH_DHG SMILES ACDLabs 10.04 [O-]CC(N)C(=O)O SER_LFOH_DHG InChI InChI 1.01 InChI=1/C3H6NO3/c4-2(1-5)3(6)7/h2H,1,4H2,(H,6,7)/q-1/t2-/m0/s1 SER_LFOH_DHG SMILES_CANONICAL CACTVS 3.341 N[C@@H](C[O-])C(O)=O SER_LFOH_DHG SMILES CACTVS 3.341 N[CH](C[O-])C(O)=O SER_LFOH_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)N)[O-] SER_LFOH_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)N)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LFOH_DHG "SYSTEMATIC NAME" ACDLabs 10.04 3-oxido-L-alanine SER_LFOH_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-amino-3-hydroxy-3-oxo-propan-1-olate # # data_SER_LFZW # _chem_comp.id SER_LFZW _chem_comp.name "L-SERINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 105.093 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LFZW N N N 1 1 N N N 88.198 -7.658 -9.979 0.449 1.592 -0.226 1 SER_LFZW CA CA C 0 1 N N S 87.782 -7.276 -11.358 0.222 0.156 -0.431 2 SER_LFZW C C C 0 1 N N N 88.571 -6.062 -11.818 -1.196 -0.188 -0.052 3 SER_LFZW O O O 0 1 N N N 89.008 -5.296 -10.944 -1.648 -1.288 -0.317 4 SER_LFZW CB CB C 0 1 N N N 86.286 -6.966 -11.391 1.191 -0.644 0.441 5 SER_LFZW OG OG O 0 1 N N N 85.543 -8.096 -10.989 2.531 -0.407 0.004 6 SER_LFZW OXT OXT O -1 1 N Y N 88.737 -5.884 -13.035 -1.890 0.635 0.521 7 SER_LFZW HA HA H 0 1 N N N 87.986 -8.118 -12.036 0.387 -0.092 -1.480 8 SER_LFZW HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 1.088 -0.332 1.480 9 SER_LFZW HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 0.964 -1.707 0.357 10 SER_LFZW HG HG H 0 1 N N N 85.376 -8.650 -11.742 3.201 -0.883 0.514 11 SER_LFZW H1 H1 H 0 1 N N N 89.194 -7.744 -9.942 1.398 1.822 -0.480 12 SER_LFZW H2 H2 H 0 1 N N N 87.900 -6.954 -9.334 -0.190 2.120 -0.801 13 SER_LFZW H3 H3 H 0 1 N N N 87.779 -8.533 -9.735 0.296 1.822 0.745 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LFZW N CA SING N N 1 SER_LFZW CA C SING N N 2 SER_LFZW CA CB SING N N 3 SER_LFZW CA HA SING N N 4 SER_LFZW C O DOUB N N 5 SER_LFZW C OXT SING N N 6 SER_LFZW CB OG SING N N 7 SER_LFZW CB HB2 SING N N 8 SER_LFZW CB HB3 SING N N 9 SER_LFZW OG HG SING N N 10 SER_LFZW H1 N SING N N 11 SER_LFZW H2 N SING N N 12 SER_LFZW H3 N SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])CO SER_LFZW InChI InChI 1.01 InChI=1/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1 SER_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CO)C([O-])=O SER_LFZW SMILES CACTVS 3.341 [NH3+][CH](CO)C([O-])=O SER_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH3+])O SER_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH3+])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-hydroxypropanoate SER_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-hydroxy-propanoate # # data_SER_LFZW_DHG # _chem_comp.id SER_LFZW_DHG _chem_comp.name "L-SERINE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED OG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 104.085 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LFZW_DHG N N N 1 1 N N N 88.198 -7.658 -9.979 -0.511 1.573 0.228 1 SER_LFZW_DHG CA CA C 0 1 N N S 87.782 -7.276 -11.358 -0.259 0.140 0.425 2 SER_LFZW_DHG C C C 0 1 N N N 88.571 -6.062 -11.818 1.168 -0.175 0.054 3 SER_LFZW_DHG O O O 0 1 N N N 89.008 -5.296 -10.944 1.639 -1.269 0.315 4 SER_LFZW_DHG CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.207 -0.672 -0.459 5 SER_LFZW_DHG OG OG O -1 1 N N N 85.543 -8.096 -10.989 -2.554 -0.463 -0.031 6 SER_LFZW_DHG OXT OXT O -1 1 N Y N 88.737 -5.884 -13.035 1.851 0.664 -0.508 7 SER_LFZW_DHG HA HA H 0 1 N N N 87.986 -8.118 -12.036 -0.427 -0.118 1.471 8 SER_LFZW_DHG HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.101 -0.351 -1.496 9 SER_LFZW_DHG HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -0.960 -1.731 -0.380 10 SER_LFZW_DHG H1 H1 H 0 1 N N N 89.194 -7.744 -9.942 -0.355 1.812 -0.740 11 SER_LFZW_DHG H2 H2 H 0 1 N N N 87.900 -6.954 -9.334 -1.466 1.784 0.476 12 SER_LFZW_DHG H3 H3 H 0 1 N N N 87.779 -8.533 -9.735 0.114 2.109 0.811 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LFZW_DHG N CA SING N N 1 SER_LFZW_DHG CA C SING N N 2 SER_LFZW_DHG CA CB SING N N 3 SER_LFZW_DHG CA HA SING N N 4 SER_LFZW_DHG C O DOUB N N 5 SER_LFZW_DHG C OXT SING N N 6 SER_LFZW_DHG CB OG SING N N 7 SER_LFZW_DHG CB HB2 SING N N 8 SER_LFZW_DHG CB HB3 SING N N 9 SER_LFZW_DHG H1 N SING N N 10 SER_LFZW_DHG H2 N SING N N 11 SER_LFZW_DHG H3 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LFZW_DHG SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])C[O-] SER_LFZW_DHG InChI InChI 1.01 InChI=1/C3H6NO3/c4-2(1-5)3(6)7/h2H,1,4H2,(H,6,7)/q-1/t2-/m0/s1 SER_LFZW_DHG SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](C[O-])C([O-])=O SER_LFZW_DHG SMILES CACTVS 3.341 [NH3+][CH](C[O-])C([O-])=O SER_LFZW_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)[O-])[NH3+])[O-] SER_LFZW_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)[O-])[NH3+])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LFZW_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-oxidopropanoate SER_LFZW_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-oxido-propanoate # # data_SER_LL # _chem_comp.id SER_LL _chem_comp.name "L-SERINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O2" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 87.077 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LL N N N -1 1 N N N 88.198 -7.658 -9.979 0.079 1.465 -0.124 1 SER_LL CA CA C 0 1 N N S 87.782 -7.276 -11.358 0.073 0.053 0.281 2 SER_LL C C C -1 1 N N N 88.571 -6.062 -11.818 1.330 -0.616 -0.212 3 SER_LL O O O 0 1 N N N 89.008 -5.296 -10.944 2.410 -0.213 0.148 4 SER_LL CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.147 -0.646 -0.321 5 SER_LL OG OG O 0 1 N N N 85.543 -8.096 -10.989 -2.339 -0.088 0.236 6 SER_LL H H H 0 1 N N N 89.194 -7.744 -9.942 0.119 1.553 -1.128 7 SER_LL HA HA H 0 1 N N N 87.986 -8.118 -12.036 0.029 -0.013 1.368 8 SER_LL HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.150 -0.504 -1.402 9 SER_LL HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -1.104 -1.711 -0.095 10 SER_LL HG HG H 0 1 N N N 85.376 -8.650 -11.742 -3.154 -0.485 -0.102 11 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LL N CA SING N N 1 SER_LL N H SING N N 2 SER_LL CA C SING N N 3 SER_LL CA CB SING N N 4 SER_LL CA HA SING N N 5 SER_LL C O DOUB N N 6 SER_LL CB OG SING N N 7 SER_LL CB HB2 SING N N 8 SER_LL CB HB3 SING N N 9 SER_LL OG HG SING N N 10 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])CO SER_LL InChI InChI 1.01 InChI=1/C3H5NO2/c4-3(1-5)2-6/h3-5H,1H2/q-2/t3-/m0/s1 SER_LL SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](CO)[C-]=O SER_LL SMILES CACTVS 3.341 [NH-][CH](CO)[C-]=O SER_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH-])O SER_LL SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(hydroxymethyl)-2-oxoethan-2-idyl]azanide SER_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-oxo-propan-2-yl]azanide # # data_SER_LL_DHG # _chem_comp.id SER_LL_DHG _chem_comp.name "L-SERINE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H4 N O2" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 86.069 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LL_DHG N N N -1 1 N N N 88.198 -7.658 -9.979 0.029 1.460 -0.123 1 SER_LL_DHG CA CA C 0 1 N N S 87.782 -7.276 -11.358 0.035 0.047 0.280 2 SER_LL_DHG C C C -1 1 N N N 88.571 -6.062 -11.818 1.299 -0.610 -0.212 3 SER_LL_DHG O O O 0 1 N N N 89.008 -5.296 -10.944 2.375 -0.198 0.150 4 SER_LL_DHG CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.178 -0.662 -0.325 5 SER_LL_DHG OG OG O -1 1 N N N 85.543 -8.096 -10.989 -2.375 -0.116 0.231 6 SER_LL_DHG H H H 0 1 N N N 89.194 -7.744 -9.942 0.070 1.549 -1.127 7 SER_LL_DHG HA HA H 0 1 N N N 87.986 -8.118 -12.036 -0.010 -0.021 1.367 8 SER_LL_DHG HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.180 -0.518 -1.406 9 SER_LL_DHG HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -1.126 -1.727 -0.100 10 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LL_DHG N CA SING N N 1 SER_LL_DHG N H SING N N 2 SER_LL_DHG CA C SING N N 3 SER_LL_DHG CA CB SING N N 4 SER_LL_DHG CA HA SING N N 5 SER_LL_DHG C O DOUB N N 6 SER_LL_DHG CB OG SING N N 7 SER_LL_DHG CB HB2 SING N N 8 SER_LL_DHG CB HB3 SING N N 9 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LL_DHG SMILES ACDLabs 10.04 [O-]CC([NH-])[C-]=O SER_LL_DHG InChI InChI 1.01 InChI=1/C3H4NO2/c4-3(1-5)2-6/h3-4H,1H2/q-3/t3-/m0/s1 SER_LL_DHG SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](C[O-])[C-]=O SER_LL_DHG SMILES CACTVS 3.341 [NH-][CH](C[O-])[C-]=O SER_LL_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH-])[O-] SER_LL_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LL_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-oxopropan-3-id-1-olate SER_LL_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-oxo-propan-1-olate # # data_SER_LSN3 # _chem_comp.id SER_LSN3 _chem_comp.name "L-SERINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O2" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 89.093 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LSN3 N N N 1 1 N N N 88.198 -7.658 -9.979 0.079 1.419 -0.160 1 SER_LSN3 CA CA C 0 1 N N S 87.782 -7.276 -11.358 0.072 0.015 0.276 2 SER_LSN3 C C C -1 1 N N N 88.571 -6.062 -11.818 1.328 -0.666 -0.204 3 SER_LSN3 O O O 0 1 N N N 89.008 -5.296 -10.944 2.408 -0.257 0.147 4 SER_LSN3 CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.150 -0.694 -0.312 5 SER_LSN3 OG OG O 0 1 N N N 85.543 -8.096 -10.989 -2.341 -0.123 0.234 6 SER_LSN3 HA HA H 0 1 N N N 87.986 -8.118 -12.036 0.028 -0.027 1.364 7 SER_LSN3 HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.153 -0.575 -1.395 8 SER_LSN3 HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -1.108 -1.755 -0.063 9 SER_LSN3 HG HG H 0 1 N N N 85.376 -8.650 -11.742 -3.156 -0.526 -0.095 10 SER_LSN3 H1 H1 H 0 1 N N N 89.194 -7.744 -9.942 0.885 1.887 0.228 11 SER_LSN3 H2 H2 H 0 1 N N N 87.900 -6.954 -9.334 0.119 1.458 -1.167 12 SER_LSN3 H3 H3 H 0 1 N N N 87.779 -8.533 -9.735 -0.762 1.875 0.162 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LSN3 N CA SING N N 1 SER_LSN3 CA C SING N N 2 SER_LSN3 CA CB SING N N 3 SER_LSN3 CA HA SING N N 4 SER_LSN3 C O DOUB N N 5 SER_LSN3 CB OG SING N N 6 SER_LSN3 CB HB2 SING N N 7 SER_LSN3 CB HB3 SING N N 8 SER_LSN3 OG HG SING N N 9 SER_LSN3 H1 N SING N N 10 SER_LSN3 H2 N SING N N 11 SER_LSN3 H3 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])CO SER_LSN3 InChI InChI 1.01 InChI=1/C3H6NO2/c4-3(1-5)2-6/h3,5H,1,4H2/q-1/p+1/t3-/m0/s1 SER_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](CO)[C-]=O SER_LSN3 SMILES CACTVS 3.341 [NH3+][CH](CO)[C-]=O SER_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH3+])O SER_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH3+])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-hydroxy-1-oxopropan-1-ide SER_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-oxo-propan-2-yl]azanium # # data_SER_LSN3_DHG # _chem_comp.id SER_LSN3_DHG _chem_comp.name "L-SERINE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O2" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 88.085 _chem_comp.one_letter_code S _chem_comp.three_letter_code SER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal SER_LSN3_DHG N N N 1 1 N N N 88.198 -7.658 -9.979 0.029 1.413 -0.159 1 SER_LSN3_DHG CA CA C 0 1 N N S 87.782 -7.276 -11.358 0.035 0.009 0.275 2 SER_LSN3_DHG C C C -1 1 N N N 88.571 -6.062 -11.818 1.298 -0.658 -0.204 3 SER_LSN3_DHG O O O 0 1 N N N 89.008 -5.296 -10.944 2.374 -0.239 0.149 4 SER_LSN3_DHG CB CB C 0 1 N N N 86.286 -6.966 -11.391 -1.178 -0.712 -0.315 5 SER_LSN3_DHG OG OG O -1 1 N N N 85.543 -8.096 -10.989 -2.376 -0.153 0.229 6 SER_LSN3_DHG HA HA H 0 1 N N N 87.986 -8.118 -12.036 -0.009 -0.035 1.363 7 SER_LSN3_DHG HB2 1HB H 0 1 N N N 86.074 -6.132 -10.706 -1.181 -0.591 -1.399 8 SER_LSN3_DHG HB3 2HB H 0 1 N N N 85.999 -6.695 -12.418 -1.127 -1.772 -0.068 9 SER_LSN3_DHG H1 H1 H 0 1 N N N 89.194 -7.744 -9.942 0.829 1.889 0.230 10 SER_LSN3_DHG H2 H2 H 0 1 N N N 87.900 -6.954 -9.334 0.070 1.454 -1.166 11 SER_LSN3_DHG H3 H3 H 0 1 N N N 87.779 -8.533 -9.735 -0.817 1.860 0.162 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SER_LSN3_DHG N CA SING N N 1 SER_LSN3_DHG CA C SING N N 2 SER_LSN3_DHG CA CB SING N N 3 SER_LSN3_DHG CA HA SING N N 4 SER_LSN3_DHG C O DOUB N N 5 SER_LSN3_DHG CB OG SING N N 6 SER_LSN3_DHG CB HB2 SING N N 7 SER_LSN3_DHG CB HB3 SING N N 8 SER_LSN3_DHG H1 N SING N N 9 SER_LSN3_DHG H2 N SING N N 10 SER_LSN3_DHG H3 N SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SER_LSN3_DHG SMILES ACDLabs 10.04 [O-]CC([C-]=O)[NH3+] SER_LSN3_DHG InChI InChI 1.01 InChI=1/C3H5NO2/c4-3(1-5)2-6/h3H,1,4H2/q-2/p+1/t3-/m0/s1 SER_LSN3_DHG SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](C[O-])[C-]=O SER_LSN3_DHG SMILES CACTVS 3.341 [NH3+][CH](C[O-])[C-]=O SER_LSN3_DHG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]([C-]=O)[NH3+])[O-] SER_LSN3_DHG SMILES "OpenEye OEToolkits" 1.5.0 C(C([C-]=O)[NH3+])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SER_LSN3_DHG "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-oxopropan-3-id-1-olate SER_LSN3_DHG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-oxo-propan-1-olate # # data_THR_LEO2 # _chem_comp.id THR_LEO2 _chem_comp.name "L-THREONINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 117.103 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LEO2 N N N -1 1 N N N 36.241 32.034 31.861 -0.327 1.712 0.142 1 THR_LEO2 CA CA C 0 1 N N S 35.010 31.223 31.876 -0.043 0.363 0.651 2 THR_LEO2 C C C 0 1 N N N 35.213 30.209 30.769 1.316 -0.079 0.173 3 THR_LEO2 O O O 0 1 N N N 35.564 30.621 29.635 1.823 -1.090 0.628 4 THR_LEO2 CB CB C 0 1 N N R 33.755 32.073 31.570 -1.106 -0.610 0.135 5 THR_LEO2 OG1 OG1 O 0 1 N N N 33.730 33.235 32.412 -1.008 -0.714 -1.286 6 THR_LEO2 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.496 -0.095 0.514 7 THR_LEO2 OXT OXT O -1 1 N Y N 35.042 29.014 31.057 1.908 0.575 -0.668 8 THR_LEO2 H H H 0 1 N N N 36.508 32.218 30.915 -0.318 1.727 -0.866 9 THR_LEO2 HA HA H 0 1 N N N 34.844 30.770 32.864 -0.060 0.375 1.741 10 THR_LEO2 HB HB H 0 1 N N N 33.792 32.364 30.510 -0.948 -1.591 0.583 11 THR_LEO2 HG1 HG1 H 0 1 N N N 33.724 32.966 33.323 -1.138 0.124 -1.752 12 THR_LEO2 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.654 0.886 0.067 13 THR_LEO2 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.253 -0.788 0.147 14 THR_LEO2 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.571 -0.016 1.599 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LEO2 N CA SING N N 1 THR_LEO2 N H SING N N 2 THR_LEO2 CA C SING N N 3 THR_LEO2 CA CB SING N N 4 THR_LEO2 CA HA SING N N 5 THR_LEO2 C O DOUB N N 6 THR_LEO2 C OXT SING N N 7 THR_LEO2 CB OG1 SING N N 8 THR_LEO2 CB CG2 SING N N 9 THR_LEO2 CB HB SING N N 10 THR_LEO2 OG1 HG1 SING N N 11 THR_LEO2 CG2 HG21 SING N N 12 THR_LEO2 CG2 HG22 SING N N 13 THR_LEO2 CG2 HG23 SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])C(O)C THR_LEO2 InChI InChI 1.01 InChI=1/C4H8NO3/c1-2(6)3(5)4(7)8/h2-3,5-6H,1H3,(H,7,8)/q-1/p-1/t2-,3+/m1/s1 THR_LEO2 SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H]([NH-])C([O-])=O THR_LEO2 SMILES CACTVS 3.341 C[CH](O)[CH]([NH-])C([O-])=O THR_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)[O-])[NH-])O THR_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)[O-])[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3R)-2-azanidyl-3-hydroxybutanoate THR_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3R)-2-azanidyl-3-hydroxy-butanoate # # data_THR_LEO2_DHG1 # _chem_comp.id THR_LEO2_DHG1 _chem_comp.name "L-THREONINE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 116.095 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LEO2_DHG1 N N N -1 1 N N N 36.241 32.034 31.861 -0.337 1.714 0.112 1 THR_LEO2_DHG1 CA CA C 0 1 N N S 35.010 31.223 31.876 -0.059 0.368 0.632 2 THR_LEO2_DHG1 C C C 0 1 N N N 35.213 30.209 30.769 1.304 -0.078 0.171 3 THR_LEO2_DHG1 O O O 0 1 N N N 35.564 30.621 29.635 1.806 -1.086 0.638 4 THR_LEO2_DHG1 CB CB C 0 1 N N R 33.755 32.073 31.570 -1.117 -0.607 0.114 5 THR_LEO2_DHG1 OG1 OG1 O -1 1 N N N 33.730 33.235 32.412 -1.005 -0.721 -1.306 6 THR_LEO2_DHG1 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.511 -0.088 0.475 7 THR_LEO2_DHG1 OXT OXT O -1 1 N Y N 35.042 29.014 31.057 1.906 0.570 -0.669 8 THR_LEO2_DHG1 H H H 0 1 N N N 36.508 32.218 30.915 -0.318 1.722 -0.897 9 THR_LEO2_DHG1 HA HA H 0 1 N N N 34.844 30.770 32.864 -0.086 0.388 1.722 10 THR_LEO2_DHG1 HB HB H 0 1 N N N 33.792 32.364 30.510 -0.964 -1.585 0.570 11 THR_LEO2_DHG1 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.664 0.890 0.019 12 THR_LEO2_DHG1 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.264 -0.784 0.106 13 THR_LEO2_DHG1 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.596 -0.002 1.559 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LEO2_DHG1 N CA SING N N 1 THR_LEO2_DHG1 N H SING N N 2 THR_LEO2_DHG1 CA C SING N N 3 THR_LEO2_DHG1 CA CB SING N N 4 THR_LEO2_DHG1 CA HA SING N N 5 THR_LEO2_DHG1 C O DOUB N N 6 THR_LEO2_DHG1 C OXT SING N N 7 THR_LEO2_DHG1 CB OG1 SING N N 8 THR_LEO2_DHG1 CB CG2 SING N N 9 THR_LEO2_DHG1 CB HB SING N N 10 THR_LEO2_DHG1 CG2 HG21 SING N N 11 THR_LEO2_DHG1 CG2 HG22 SING N N 12 THR_LEO2_DHG1 CG2 HG23 SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LEO2_DHG1 SMILES ACDLabs 10.04 [O-]C(C)C([NH-])C([O-])=O THR_LEO2_DHG1 InChI InChI 1.01 InChI=1/C4H7NO3/c1-2(6)3(5)4(7)8/h2-3,5H,1H3,(H,7,8)/q-2/p-1/t2-,3+/m1/s1 THR_LEO2_DHG1 SMILES_CANONICAL CACTVS 3.341 C[C@@H]([O-])[C@H]([NH-])C([O-])=O THR_LEO2_DHG1 SMILES CACTVS 3.341 C[CH]([O-])[CH]([NH-])C([O-])=O THR_LEO2_DHG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)[O-])[NH-])[O-] THR_LEO2_DHG1 SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)[O-])[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LEO2_DHG1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3R)-2-azanidyl-3-oxidobutanoate THR_LEO2_DHG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3R)-2-azanidyl-3-oxido-butanoate # # data_THR_LEO2H # _chem_comp.id THR_LEO2H _chem_comp.name "L-THREONINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 118.111 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LEO2H N N N -1 1 N N N 36.241 32.034 31.861 -0.441 1.680 0.374 1 THR_LEO2H CA CA C 0 1 N N S 35.010 31.223 31.876 -0.076 0.292 0.686 2 THR_LEO2H C C C 0 1 N N N 35.213 30.209 30.769 1.289 -0.007 0.123 3 THR_LEO2H O O O 0 1 N N N 35.564 30.621 29.635 1.743 0.682 -0.760 4 THR_LEO2H CB CB C 0 1 N N R 33.755 32.073 31.570 -1.103 -0.657 0.065 5 THR_LEO2H OG1 OG1 O 0 1 N N N 33.730 33.235 32.412 -1.040 -0.561 -1.359 6 THR_LEO2H CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.505 -0.274 0.541 7 THR_LEO2H OXT OXT O 0 1 N Y N 35.042 29.014 31.057 2.002 -1.038 0.604 8 THR_LEO2H H H H 0 1 N N N 36.508 32.218 30.915 -0.462 1.833 -0.623 9 THR_LEO2H HA HA H 0 1 N N N 34.844 30.770 32.864 -0.062 0.155 1.768 10 THR_LEO2H HB HB H 0 1 N N N 33.792 32.364 30.510 -0.883 -1.680 0.370 11 THR_LEO2H HG1 HG1 H 0 1 N N N 33.724 32.966 33.323 -1.225 0.324 -1.702 12 THR_LEO2H HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.725 0.749 0.236 13 THR_LEO2H HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.237 -0.950 0.099 14 THR_LEO2H HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.553 -0.347 1.627 15 THR_LEO2H HXT HXT H 0 1 N Y N 35.217 28.476 30.294 2.873 -1.190 0.211 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LEO2H N CA SING N N 1 THR_LEO2H N H SING N N 2 THR_LEO2H CA C SING N N 3 THR_LEO2H CA CB SING N N 4 THR_LEO2H CA HA SING N N 5 THR_LEO2H C O DOUB N N 6 THR_LEO2H C OXT SING N N 7 THR_LEO2H CB OG1 SING N N 8 THR_LEO2H CB CG2 SING N N 9 THR_LEO2H CB HB SING N N 10 THR_LEO2H OG1 HG1 SING N N 11 THR_LEO2H CG2 HG21 SING N N 12 THR_LEO2H CG2 HG22 SING N N 13 THR_LEO2H CG2 HG23 SING N N 14 THR_LEO2H OXT HXT SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])C(O)C THR_LEO2H InChI InChI 1.01 InChI=1/C4H8NO3/c1-2(6)3(5)4(7)8/h2-3,5-6H,1H3,(H,7,8)/q-1/t2-,3+/m1/s1 THR_LEO2H SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H]([NH-])C(O)=O THR_LEO2H SMILES CACTVS 3.341 C[CH](O)[CH]([NH-])C(O)=O THR_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)O)[NH-])O THR_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)O)[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S,2R)-1-carboxy-2-hydroxypropyl]azanide THR_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S,3R)-1,3-dihydroxy-1-oxo-butan-2-yl]azanide # # data_THR_LEO2H_DHG1 # _chem_comp.id THR_LEO2H_DHG1 _chem_comp.name "L-THREONINE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 117.103 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LEO2H_DHG1 N N N -1 1 N N N 36.241 32.034 31.861 -0.452 1.692 0.314 1 THR_LEO2H_DHG1 CA CA C 0 1 N N S 35.010 31.223 31.876 -0.093 0.311 0.663 2 THR_LEO2H_DHG1 C C C 0 1 N N N 35.213 30.209 30.769 1.278 -0.004 0.122 3 THR_LEO2H_DHG1 O O O 0 1 N N N 35.564 30.621 29.635 1.741 0.662 -0.774 4 THR_LEO2H_DHG1 CB CB C 0 1 N N R 33.755 32.073 31.570 -1.115 -0.651 0.055 5 THR_LEO2H_DHG1 OG1 OG1 O -1 1 N N N 33.730 33.235 32.412 -1.038 -0.590 -1.370 6 THR_LEO2H_DHG1 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.522 -0.253 0.508 7 THR_LEO2H_DHG1 OXT OXT O 0 1 N Y N 35.042 29.014 31.057 1.984 -1.024 0.634 8 THR_LEO2H_DHG1 H H H 0 1 N N N 36.508 32.218 30.915 -0.462 1.821 -0.687 9 THR_LEO2H_DHG1 HA HA H 0 1 N N N 34.844 30.770 32.864 -0.089 0.200 1.748 10 THR_LEO2H_DHG1 HB HB H 0 1 N N N 33.792 32.364 30.510 -0.900 -1.667 0.387 11 THR_LEO2H_DHG1 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.736 0.762 0.176 12 THR_LEO2H_DHG1 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.250 -0.939 0.075 13 THR_LEO2H_DHG1 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.580 -0.300 1.595 14 THR_LEO2H_DHG1 HXT HXT H 0 1 N Y N 35.217 28.476 30.294 2.858 -1.188 0.254 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LEO2H_DHG1 N CA SING N N 1 THR_LEO2H_DHG1 N H SING N N 2 THR_LEO2H_DHG1 CA C SING N N 3 THR_LEO2H_DHG1 CA CB SING N N 4 THR_LEO2H_DHG1 CA HA SING N N 5 THR_LEO2H_DHG1 C O DOUB N N 6 THR_LEO2H_DHG1 C OXT SING N N 7 THR_LEO2H_DHG1 CB OG1 SING N N 8 THR_LEO2H_DHG1 CB CG2 SING N N 9 THR_LEO2H_DHG1 CB HB SING N N 10 THR_LEO2H_DHG1 CG2 HG21 SING N N 11 THR_LEO2H_DHG1 CG2 HG22 SING N N 12 THR_LEO2H_DHG1 CG2 HG23 SING N N 13 THR_LEO2H_DHG1 OXT HXT SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LEO2H_DHG1 SMILES ACDLabs 10.04 [O-]C(C)C([NH-])C(=O)O THR_LEO2H_DHG1 InChI InChI 1.01 InChI=1/C4H7NO3/c1-2(6)3(5)4(7)8/h2-3,5H,1H3,(H,7,8)/q-2/t2-,3+/m1/s1 THR_LEO2H_DHG1 SMILES_CANONICAL CACTVS 3.341 C[C@@H]([O-])[C@H]([NH-])C(O)=O THR_LEO2H_DHG1 SMILES CACTVS 3.341 C[CH]([O-])[CH]([NH-])C(O)=O THR_LEO2H_DHG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)O)[NH-])[O-] THR_LEO2H_DHG1 SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)O)[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LEO2H_DHG1 "SYSTEMATIC NAME" ACDLabs 10.04 (1S,2R)-1-azanidyl-1-carboxypropan-2-olate THR_LEO2H_DHG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3S)-3-azanidyl-4-hydroxy-4-oxo-butan-2-olate # # data_THR_LFOH # _chem_comp.id THR_LFOH _chem_comp.name "L-THREONINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H9 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 119.119 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LFOH N N N 0 1 N N N 36.241 32.034 31.861 -0.429 1.714 0.086 1 THR_LFOH CA CA C 0 1 N N S 35.010 31.223 31.876 -0.062 0.397 0.624 2 THR_LFOH C C C 0 1 N N N 35.213 30.209 30.769 1.304 0.011 0.118 3 THR_LFOH O O O 0 1 N N N 35.564 30.621 29.635 1.757 0.544 -0.867 4 THR_LFOH CB CB C 0 1 N N R 33.755 32.073 31.570 -1.087 -0.644 0.168 5 THR_LFOH OG1 OG1 O 0 1 N N N 33.730 33.235 32.412 -1.023 -0.784 -1.253 6 THR_LFOH CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.490 -0.189 0.573 7 THR_LFOH OXT OXT O 0 1 N Y N 35.042 29.014 31.057 2.018 -0.926 0.762 8 THR_LFOH HA HA H 0 1 N N N 34.844 30.770 32.864 -0.048 0.440 1.713 9 THR_LFOH HB HB H 0 1 N N N 33.792 32.364 30.510 -0.866 -1.602 0.638 10 THR_LFOH HG1 HG1 H 0 1 N N N 33.724 32.966 33.323 -1.648 -1.429 -1.613 11 THR_LFOH HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -3.220 -0.930 0.248 12 THR_LFOH HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -2.539 -0.082 1.657 13 THR_LFOH HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.712 0.769 0.103 14 THR_LFOH HXT HXT H 0 1 N Y N 35.217 28.476 30.294 2.889 -1.140 0.401 15 THR_LFOH H1 H1 H 0 1 N N N 36.508 32.218 30.915 -0.449 1.700 -0.923 16 THR_LFOH H2 H2 H 0 1 N N N 36.076 32.899 32.334 -1.313 2.024 0.461 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LFOH N CA SING N N 1 THR_LFOH CA C SING N N 2 THR_LFOH CA CB SING N N 3 THR_LFOH CA HA SING N N 4 THR_LFOH C O DOUB N N 5 THR_LFOH C OXT SING N N 6 THR_LFOH CB OG1 SING N N 7 THR_LFOH CB CG2 SING N N 8 THR_LFOH CB HB SING N N 9 THR_LFOH OG1 HG1 SING N N 10 THR_LFOH CG2 HG21 SING N N 11 THR_LFOH CG2 HG22 SING N N 12 THR_LFOH CG2 HG23 SING N N 13 THR_LFOH OXT HXT SING N N 14 THR_LFOH H1 N SING N N 15 THR_LFOH H2 N SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)C(O)C THR_LFOH InChI InChI 1.01 InChI=1/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1 THR_LFOH SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H](N)C(O)=O THR_LFOH SMILES CACTVS 3.341 C[CH](O)[CH](N)C(O)=O THR_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)O)N)O THR_LFOH SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)O)N)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-threonine THR_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R)-2-amino-3-hydroxy-butanoic acid" # # data_THR_LFOH_DHG1 # _chem_comp.id THR_LFOH_DHG1 _chem_comp.name "L-THREONINE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED OG1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 118.111 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LFOH_DHG1 N N N 0 1 N N N 36.241 32.034 31.861 -0.450 1.689 0.202 1 THR_LFOH_DHG1 CA CA C 0 1 N N S 35.010 31.223 31.876 -0.093 0.332 0.637 2 THR_LFOH_DHG1 C C C 0 1 N N N 35.213 30.209 30.769 1.276 -0.019 0.116 3 THR_LFOH_DHG1 O O O 0 1 N N N 35.564 30.621 29.635 1.741 0.588 -0.820 4 THR_LFOH_DHG1 CB CB C 0 1 N N R 33.755 32.073 31.570 -1.118 -0.664 0.091 5 THR_LFOH_DHG1 OG1 OG1 O -1 1 N N N 33.730 33.235 32.412 -1.042 -0.692 -1.335 6 THR_LFOH_DHG1 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.523 -0.236 0.519 7 THR_LFOH_DHG1 OXT OXT O 0 1 N Y N 35.042 29.014 31.057 1.980 -1.007 0.690 8 THR_LFOH_DHG1 HA HA H 0 1 N N N 34.844 30.770 32.864 -0.089 0.289 1.727 9 THR_LFOH_DHG1 HB HB H 0 1 N N N 33.792 32.364 30.510 -0.905 -1.658 0.486 10 THR_LFOH_DHG1 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.736 0.757 0.124 11 THR_LFOH_DHG1 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.253 -0.946 0.130 12 THR_LFOH_DHG1 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.582 -0.215 1.607 13 THR_LFOH_DHG1 HXT HXT H 0 1 N Y N 35.217 28.476 30.294 2.854 -1.196 0.321 14 THR_LFOH_DHG1 H1 H1 H 0 1 N N N 36.508 32.218 30.915 0.175 2.373 0.603 15 THR_LFOH_DHG1 H2 H2 H 0 1 N N N 36.076 32.899 32.334 -0.460 1.755 -0.804 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LFOH_DHG1 N CA SING N N 1 THR_LFOH_DHG1 CA C SING N N 2 THR_LFOH_DHG1 CA CB SING N N 3 THR_LFOH_DHG1 CA HA SING N N 4 THR_LFOH_DHG1 C O DOUB N N 5 THR_LFOH_DHG1 C OXT SING N N 6 THR_LFOH_DHG1 CB OG1 SING N N 7 THR_LFOH_DHG1 CB CG2 SING N N 8 THR_LFOH_DHG1 CB HB SING N N 9 THR_LFOH_DHG1 CG2 HG21 SING N N 10 THR_LFOH_DHG1 CG2 HG22 SING N N 11 THR_LFOH_DHG1 CG2 HG23 SING N N 12 THR_LFOH_DHG1 OXT HXT SING N N 13 THR_LFOH_DHG1 H1 N SING N N 14 THR_LFOH_DHG1 H2 N SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LFOH_DHG1 SMILES ACDLabs 10.04 [O-]C(C)C(N)C(=O)O THR_LFOH_DHG1 InChI InChI 1.01 InChI=1/C4H8NO3/c1-2(6)3(5)4(7)8/h2-3H,5H2,1H3,(H,7,8)/q-1/t2-,3+/m1/s1 THR_LFOH_DHG1 SMILES_CANONICAL CACTVS 3.341 C[C@@H]([O-])[C@H](N)C(O)=O THR_LFOH_DHG1 SMILES CACTVS 3.341 C[CH]([O-])[CH](N)C(O)=O THR_LFOH_DHG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)O)N)[O-] THR_LFOH_DHG1 SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)O)N)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LFOH_DHG1 "SYSTEMATIC NAME" ACDLabs 10.04 (1S,2R)-1-amino-1-carboxypropan-2-olate THR_LFOH_DHG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3S)-3-amino-4-hydroxy-4-oxo-butan-2-olate # # data_THR_LFZW # _chem_comp.id THR_LFZW _chem_comp.name "L-THREONINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H9 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 119.119 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LFZW N N N 1 1 N N N 36.241 32.034 31.861 0.312 1.681 0.026 1 THR_LFZW CA CA C 0 1 N N S 35.010 31.223 31.876 0.039 0.385 -0.609 2 THR_LFZW C C C 0 1 N N N 35.213 30.209 30.769 -1.321 -0.105 -0.185 3 THR_LFZW O O O 0 1 N N N 35.564 30.621 29.635 -2.000 0.563 0.576 4 THR_LFZW CB CB C 0 1 N N R 33.755 32.073 31.570 1.103 -0.627 -0.180 5 THR_LFZW OG1 OG1 O 0 1 N N N 33.730 33.235 32.412 0.995 -0.864 1.225 6 THR_LFZW CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 2.493 -0.073 -0.499 7 THR_LFZW OXT OXT O -1 1 N Y N 35.042 29.014 31.057 -1.743 -1.170 -0.602 8 THR_LFZW HA HA H 0 1 N N N 34.844 30.770 32.864 0.062 0.499 -1.693 9 THR_LFZW HB HB H 0 1 N N N 33.792 32.364 30.510 0.952 -1.563 -0.719 10 THR_LFZW HG1 HG1 H 0 1 N N N 33.724 32.966 33.323 1.118 -0.073 1.768 11 THR_LFZW HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 2.643 0.863 0.040 12 THR_LFZW HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 3.250 -0.794 -0.193 13 THR_LFZW HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 2.575 0.108 -1.570 14 THR_LFZW H1 H1 H 0 1 N N N 36.508 32.218 30.915 1.223 2.010 -0.258 15 THR_LFZW H2 H2 H 0 1 N N N 36.076 32.899 32.334 -0.389 2.349 -0.257 16 THR_LFZW H3 H3 H 0 1 N N N 36.974 31.535 32.323 0.291 1.576 1.029 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LFZW N CA SING N N 1 THR_LFZW CA C SING N N 2 THR_LFZW CA CB SING N N 3 THR_LFZW CA HA SING N N 4 THR_LFZW C O DOUB N N 5 THR_LFZW C OXT SING N N 6 THR_LFZW CB OG1 SING N N 7 THR_LFZW CB CG2 SING N N 8 THR_LFZW CB HB SING N N 9 THR_LFZW OG1 HG1 SING N N 10 THR_LFZW CG2 HG21 SING N N 11 THR_LFZW CG2 HG22 SING N N 12 THR_LFZW CG2 HG23 SING N N 13 THR_LFZW H1 N SING N N 14 THR_LFZW H2 N SING N N 15 THR_LFZW H3 N SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])C(O)C THR_LFZW InChI InChI 1.01 InChI=1/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1 THR_LFZW SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H]([NH3+])C([O-])=O THR_LFZW SMILES CACTVS 3.341 C[CH](O)[CH]([NH3+])C([O-])=O THR_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)[O-])[NH3+])O THR_LFZW SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)[O-])[NH3+])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3R)-2-ammonio-3-hydroxybutanoate THR_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3R)-2-azaniumyl-3-hydroxy-butanoate # # data_THR_LFZW_DHG1 # _chem_comp.id THR_LFZW_DHG1 _chem_comp.name "L-THREONINE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED OG1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N O3" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 118.111 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LFZW_DHG1 N N N 1 1 N N N 36.241 32.034 31.861 0.345 1.677 -0.023 1 THR_LFZW_DHG1 CA CA C 0 1 N N S 35.010 31.223 31.876 0.056 0.361 -0.608 2 THR_LFZW_DHG1 C C C 0 1 N N N 35.213 30.209 30.769 -1.313 -0.094 -0.171 3 THR_LFZW_DHG1 O O O 0 1 N N N 35.564 30.621 29.635 -1.824 -1.074 -0.686 4 THR_LFZW_DHG1 CB CB C 0 1 N N R 33.755 32.073 31.570 1.104 -0.649 -0.136 5 THR_LFZW_DHG1 OG1 OG1 O -1 1 N N N 33.730 33.235 32.412 0.988 -0.830 1.277 6 THR_LFZW_DHG1 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 2.503 -0.127 -0.470 7 THR_LFZW_DHG1 OXT OXT O -1 1 N Y N 35.042 29.014 31.057 -1.909 0.518 0.699 8 THR_LFZW_DHG1 HA HA H 0 1 N N N 34.844 30.770 32.864 0.085 0.432 -1.696 9 THR_LFZW_DHG1 HB HB H 0 1 N N N 33.792 32.364 30.510 0.942 -1.603 -0.638 10 THR_LFZW_DHG1 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 2.664 0.827 0.032 11 THR_LFZW_DHG1 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 3.249 -0.846 -0.133 12 THR_LFZW_DHG1 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 2.591 0.011 -1.548 13 THR_LFZW_DHG1 H1 H1 H 0 1 N N N 36.508 32.218 30.915 1.262 1.981 -0.316 14 THR_LFZW_DHG1 H2 H2 H 0 1 N N N 36.076 32.899 32.334 -0.346 2.342 -0.335 15 THR_LFZW_DHG1 H3 H3 H 0 1 N N N 36.974 31.535 32.323 0.319 1.610 0.983 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LFZW_DHG1 N CA SING N N 1 THR_LFZW_DHG1 CA C SING N N 2 THR_LFZW_DHG1 CA CB SING N N 3 THR_LFZW_DHG1 CA HA SING N N 4 THR_LFZW_DHG1 C O DOUB N N 5 THR_LFZW_DHG1 C OXT SING N N 6 THR_LFZW_DHG1 CB OG1 SING N N 7 THR_LFZW_DHG1 CB CG2 SING N N 8 THR_LFZW_DHG1 CB HB SING N N 9 THR_LFZW_DHG1 CG2 HG21 SING N N 10 THR_LFZW_DHG1 CG2 HG22 SING N N 11 THR_LFZW_DHG1 CG2 HG23 SING N N 12 THR_LFZW_DHG1 H1 N SING N N 13 THR_LFZW_DHG1 H2 N SING N N 14 THR_LFZW_DHG1 H3 N SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LFZW_DHG1 SMILES ACDLabs 10.04 [O-]C(C)C(C([O-])=O)[NH3+] THR_LFZW_DHG1 InChI InChI 1.01 InChI=1/C4H8NO3/c1-2(6)3(5)4(7)8/h2-3H,5H2,1H3,(H,7,8)/q-1/t2-,3+/m1/s1 THR_LFZW_DHG1 SMILES_CANONICAL CACTVS 3.341 C[C@@H]([O-])[C@H]([NH3+])C([O-])=O THR_LFZW_DHG1 SMILES CACTVS 3.341 C[CH]([O-])[CH]([NH3+])C([O-])=O THR_LFZW_DHG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H](C(=O)[O-])[NH3+])[O-] THR_LFZW_DHG1 SMILES "OpenEye OEToolkits" 1.5.0 CC(C(C(=O)[O-])[NH3+])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LFZW_DHG1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3R)-2-ammonio-3-oxidobutanoate THR_LFZW_DHG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3R)-2-azaniumyl-3-oxido-butanoate # # data_THR_LL # _chem_comp.id THR_LL _chem_comp.name "L-THREONINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N O2" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 101.104 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LL N N N -1 1 N N N 36.241 32.034 31.861 0.251 -1.271 0.845 1 THR_LL CA CA C 0 1 N N S 35.010 31.223 31.876 0.292 -0.427 -0.357 2 THR_LL C C C -1 1 N N N 35.213 30.209 30.769 1.449 0.534 -0.257 3 THR_LL O O O 0 1 N N N 35.564 30.621 29.635 2.576 0.113 -0.157 4 THR_LL CB CB C 0 1 N N R 33.755 32.073 31.570 -1.015 0.359 -0.474 5 THR_LL OG1 OG1 O 0 1 N N N 33.730 33.235 32.412 -1.123 1.269 0.623 6 THR_LL CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.198 -0.611 -0.449 7 THR_LL H H H 0 1 N N N 36.508 32.218 30.915 0.135 -0.711 1.676 8 THR_LL HA HA H 0 1 N N N 34.844 30.770 32.864 0.417 -1.056 -1.239 9 THR_LL HB HB H 0 1 N N N 33.792 32.364 30.510 -1.022 0.917 -1.410 10 THR_LL HG1 HG1 H 0 1 N N N 33.724 32.966 33.323 -1.123 0.841 1.491 11 THR_LL HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.191 -1.169 0.487 12 THR_LL HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.129 -0.051 -0.532 13 THR_LL HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.115 -1.305 -1.286 14 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LL N CA SING N N 1 THR_LL N H SING N N 2 THR_LL CA C SING N N 3 THR_LL CA CB SING N N 4 THR_LL CA HA SING N N 5 THR_LL C O DOUB N N 6 THR_LL CB OG1 SING N N 7 THR_LL CB CG2 SING N N 8 THR_LL CB HB SING N N 9 THR_LL OG1 HG1 SING N N 10 THR_LL CG2 HG21 SING N N 11 THR_LL CG2 HG22 SING N N 12 THR_LL CG2 HG23 SING N N 13 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])C(O)C THR_LL InChI InChI 1.01 InChI=1/C4H7NO2/c1-3(7)4(5)2-6/h3-5,7H,1H3/q-2/t3-,4-/m1/s1 THR_LL SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H]([NH-])[C-]=O THR_LL SMILES CACTVS 3.341 C[CH](O)[CH]([NH-])[C-]=O THR_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H]([C-]=O)[NH-])O THR_LL SMILES "OpenEye OEToolkits" 1.5.0 CC(C([C-]=O)[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LL "SYSTEMATIC NAME" ACDLabs 10.04 {(1S)-1-[(1R)-1-hydroxyethyl]-2-oxoethan-2-idyl}azanide THR_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S,3R)-3-hydroxy-1-oxo-butan-2-yl]azanide # # data_THR_LL_DHG1 # _chem_comp.id THR_LL_DHG1 _chem_comp.name "L-THREONINE-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 N O2" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 100.096 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LL_DHG1 N N N -1 1 N N N 36.241 32.034 31.861 0.240 -1.296 0.808 1 THR_LL_DHG1 CA CA C 0 1 N N S 35.010 31.223 31.876 0.276 -0.407 -0.361 2 THR_LL_DHG1 C C C -1 1 N N N 35.213 30.209 30.769 1.439 0.544 -0.233 3 THR_LL_DHG1 O O O 0 1 N N N 35.564 30.621 29.635 2.565 0.114 -0.159 4 THR_LL_DHG1 CB CB C 0 1 N N R 33.755 32.073 31.570 -1.028 0.390 -0.435 5 THR_LL_DHG1 OG1 OG1 O -1 1 N N N 33.730 33.235 32.412 -1.122 1.257 0.697 6 THR_LL_DHG1 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.216 -0.574 -0.439 7 THR_LL_DHG1 H H H 0 1 N N N 36.508 32.218 30.915 0.134 -0.767 1.661 8 THR_LL_DHG1 HA HA H 0 1 N N N 34.844 30.770 32.864 0.391 -1.002 -1.266 9 THR_LL_DHG1 HB HB H 0 1 N N N 33.792 32.364 30.510 -1.039 0.984 -1.350 10 THR_LL_DHG1 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.205 -1.168 0.475 11 THR_LL_DHG1 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.145 -0.007 -0.493 12 THR_LL_DHG1 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.144 -1.236 -1.303 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LL_DHG1 N CA SING N N 1 THR_LL_DHG1 N H SING N N 2 THR_LL_DHG1 CA C SING N N 3 THR_LL_DHG1 CA CB SING N N 4 THR_LL_DHG1 CA HA SING N N 5 THR_LL_DHG1 C O DOUB N N 6 THR_LL_DHG1 CB OG1 SING N N 7 THR_LL_DHG1 CB CG2 SING N N 8 THR_LL_DHG1 CB HB SING N N 9 THR_LL_DHG1 CG2 HG21 SING N N 10 THR_LL_DHG1 CG2 HG22 SING N N 11 THR_LL_DHG1 CG2 HG23 SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LL_DHG1 SMILES ACDLabs 10.04 [O-]C(C)C([NH-])[C-]=O THR_LL_DHG1 InChI InChI 1.01 InChI=1/C4H6NO2/c1-3(7)4(5)2-6/h3-5H,1H3/q-3/t3-,4-/m1/s1 THR_LL_DHG1 SMILES_CANONICAL CACTVS 3.341 C[C@@H]([O-])[C@H]([NH-])[C-]=O THR_LL_DHG1 SMILES CACTVS 3.341 C[CH]([O-])[CH]([NH-])[C-]=O THR_LL_DHG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H]([C-]=O)[NH-])[O-] THR_LL_DHG1 SMILES "OpenEye OEToolkits" 1.5.0 CC(C([C-]=O)[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LL_DHG1 "SYSTEMATIC NAME" ACDLabs 10.04 (2R,3S)-3-azanidyl-4-oxobutan-4-id-2-olate THR_LL_DHG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3S)-3-azanidyl-4-oxo-butan-2-olate # # data_THR_LSN3 # _chem_comp.id THR_LSN3 _chem_comp.name "L-THREONINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H9 N O2" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 103.120 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LSN3 N N N 1 1 N N N 36.241 32.034 31.861 -0.283 -1.299 -0.737 1 THR_LSN3 CA CA C 0 1 N N S 35.010 31.223 31.876 -0.301 -0.365 0.396 2 THR_LSN3 C C C -1 1 N N N 35.213 30.209 30.769 -1.438 0.609 0.227 3 THR_LSN3 O O O 0 1 N N N 35.564 30.621 29.635 -2.574 0.205 0.164 4 THR_LSN3 CB CB C 0 1 N N R 33.755 32.073 31.570 1.023 0.400 0.446 5 THR_LSN3 OG1 OG1 O 0 1 N N N 33.730 33.235 32.412 1.144 1.220 -0.718 6 THR_LSN3 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 2.186 -0.593 0.492 7 THR_LSN3 HA HA H 0 1 N N N 34.844 30.770 32.864 -0.434 -0.922 1.324 8 THR_LSN3 HB HB H 0 1 N N N 33.792 32.364 30.510 1.046 1.028 1.337 9 THR_LSN3 HG1 HG1 H 0 1 N N N 33.724 32.966 33.323 1.961 1.736 -0.753 10 THR_LSN3 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 3.129 -0.048 0.528 11 THR_LSN3 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 2.094 -1.219 1.380 12 THR_LSN3 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 2.162 -1.221 -0.398 13 THR_LSN3 H1 H1 H 0 1 N N N 36.508 32.218 30.915 0.478 -1.952 -0.624 14 THR_LSN3 H2 H2 H 0 1 N N N 36.076 32.899 32.334 -1.156 -1.804 -0.770 15 THR_LSN3 H3 H3 H 0 1 N N N 36.974 31.535 32.323 -0.160 -0.784 -1.596 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LSN3 N CA SING N N 1 THR_LSN3 CA C SING N N 2 THR_LSN3 CA CB SING N N 3 THR_LSN3 CA HA SING N N 4 THR_LSN3 C O DOUB N N 5 THR_LSN3 CB OG1 SING N N 6 THR_LSN3 CB CG2 SING N N 7 THR_LSN3 CB HB SING N N 8 THR_LSN3 OG1 HG1 SING N N 9 THR_LSN3 CG2 HG21 SING N N 10 THR_LSN3 CG2 HG22 SING N N 11 THR_LSN3 CG2 HG23 SING N N 12 THR_LSN3 H1 N SING N N 13 THR_LSN3 H2 N SING N N 14 THR_LSN3 H3 N SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])C(O)C THR_LSN3 InChI InChI 1.01 InChI=1/C4H8NO2/c1-3(7)4(5)2-6/h3-4,7H,5H2,1H3/q-1/p+1/t3-,4-/m1/s1 THR_LSN3 SMILES_CANONICAL CACTVS 3.341 C[C@@H](O)[C@H]([NH3+])[C-]=O THR_LSN3 SMILES CACTVS 3.341 C[CH](O)[CH]([NH3+])[C-]=O THR_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H]([C-]=O)[NH3+])O THR_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 CC(C([C-]=O)[NH3+])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3R)-2-ammonio-3-hydroxy-1-oxobutan-1-ide THR_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S,3R)-3-hydroxy-1-oxo-butan-2-yl]azanium # # data_THR_LSN3_DHG1 # _chem_comp.id THR_LSN3_DHG1 _chem_comp.name "L-THREONINE-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OG1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N O2" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 102.112 _chem_comp.one_letter_code T _chem_comp.three_letter_code THR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal THR_LSN3_DHG1 N N N 1 1 N N N 36.241 32.034 31.861 0.243 -1.312 0.698 1 THR_LSN3_DHG1 CA CA C 0 1 N N S 35.010 31.223 31.876 0.271 -0.340 -0.403 2 THR_LSN3_DHG1 C C C -1 1 N N N 35.213 30.209 30.769 1.429 0.605 -0.209 3 THR_LSN3_DHG1 O O O 0 1 N N N 35.564 30.621 29.635 2.558 0.177 -0.169 4 THR_LSN3_DHG1 CB CB C 0 1 N N R 33.755 32.073 31.570 -1.037 0.453 -0.416 5 THR_LSN3_DHG1 OG1 OG1 O -1 1 N N N 33.730 33.235 32.412 -1.133 1.235 0.776 6 THR_LSN3_DHG1 CG2 CG2 C 0 1 N N N 32.482 31.262 31.863 -2.219 -0.516 -0.488 7 THR_LSN3_DHG1 HA HA H 0 1 N N N 34.844 30.770 32.864 0.387 -0.866 -1.350 8 THR_LSN3_DHG1 HB HB H 0 1 N N N 33.792 32.364 30.510 -1.054 1.112 -1.285 9 THR_LSN3_DHG1 HG21 1HG2 H 0 0 N N N 32.411 31.068 32.943 -2.203 -1.174 0.381 10 THR_LSN3_DHG1 HG22 2HG2 H 0 0 N N N 31.601 31.832 31.534 -3.152 0.049 -0.498 11 THR_LSN3_DHG1 HG23 3HG2 H 0 0 N N N 32.524 30.306 31.321 -2.146 -1.112 -1.397 12 THR_LSN3_DHG1 H1 H1 H 0 1 N N N 36.508 32.218 30.915 0.136 -0.825 1.575 13 THR_LSN3_DHG1 H2 H2 H 0 1 N N N 36.076 32.899 32.334 -0.532 -1.945 0.568 14 THR_LSN3_DHG1 H3 H3 H 0 1 N N N 36.974 31.535 32.323 1.106 -1.835 0.707 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THR_LSN3_DHG1 N CA SING N N 1 THR_LSN3_DHG1 CA C SING N N 2 THR_LSN3_DHG1 CA CB SING N N 3 THR_LSN3_DHG1 CA HA SING N N 4 THR_LSN3_DHG1 C O DOUB N N 5 THR_LSN3_DHG1 CB OG1 SING N N 6 THR_LSN3_DHG1 CB CG2 SING N N 7 THR_LSN3_DHG1 CB HB SING N N 8 THR_LSN3_DHG1 CG2 HG21 SING N N 9 THR_LSN3_DHG1 CG2 HG22 SING N N 10 THR_LSN3_DHG1 CG2 HG23 SING N N 11 THR_LSN3_DHG1 H1 N SING N N 12 THR_LSN3_DHG1 H2 N SING N N 13 THR_LSN3_DHG1 H3 N SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THR_LSN3_DHG1 SMILES ACDLabs 10.04 [O-]C(C)C([C-]=O)[NH3+] THR_LSN3_DHG1 InChI InChI 1.01 InChI=1/C4H7NO2/c1-3(7)4(5)2-6/h3-4H,5H2,1H3/q-2/p+1/t3-,4-/m1/s1 THR_LSN3_DHG1 SMILES_CANONICAL CACTVS 3.341 C[C@@H]([O-])[C@H]([NH3+])[C-]=O THR_LSN3_DHG1 SMILES CACTVS 3.341 C[CH]([O-])[CH]([NH3+])[C-]=O THR_LSN3_DHG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]([C@@H]([C-]=O)[NH3+])[O-] THR_LSN3_DHG1 SMILES "OpenEye OEToolkits" 1.5.0 CC(C([C-]=O)[NH3+])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THR_LSN3_DHG1 "SYSTEMATIC NAME" ACDLabs 10.04 (2R,3S)-3-ammonio-4-oxobutan-4-id-2-olate THR_LSN3_DHG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3S)-3-azaniumyl-4-oxo-butan-2-olate # # data_TRP_LEO2 # _chem_comp.id TRP_LEO2 _chem_comp.name "L-TRYPTOPHAN C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H10 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.209 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LEO2 N N N -1 1 N N N 74.708 60.512 32.843 1.418 1.202 0.924 1 TRP_LEO2 CA CA C 0 1 N N S 74.400 61.735 32.114 2.008 -0.058 0.454 2 TRP_LEO2 C C C 0 1 N N N 73.588 61.411 30.840 3.450 0.171 0.080 3 TRP_LEO2 O O O 0 1 N N N 72.939 62.292 30.277 4.175 -0.779 -0.161 4 TRP_LEO2 CB CB C 0 1 N N N 75.684 62.473 31.706 1.237 -0.557 -0.769 5 TRP_LEO2 CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.174 -0.903 -0.367 6 TRP_LEO2 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.632 -2.118 -0.025 7 TRP_LEO2 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.304 0.024 -0.268 8 TRP_LEO2 NE1 NE1 N 0 1 Y N N 78.403 62.494 34.247 -1.965 -2.045 0.278 9 TRP_LEO2 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.406 -0.748 0.140 10 TRP_LEO2 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.457 1.395 -0.486 11 TRP_LEO2 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.641 -0.132 0.321 12 TRP_LEO2 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.678 1.979 -0.303 13 TRP_LEO2 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.769 1.221 0.101 14 TRP_LEO2 OXT OXT O -1 1 N Y N 73.495 60.470 30.438 3.891 1.306 0.019 15 TRP_LEO2 H H H 0 1 N N N 74.779 59.749 32.200 1.457 1.910 0.206 16 TRP_LEO2 HA HA H 0 1 N N N 73.809 62.379 32.782 1.952 -0.803 1.248 17 TRP_LEO2 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.217 0.223 -1.529 18 TRP_LEO2 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.727 -1.444 -1.171 19 TRP_LEO2 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.038 -3.019 0.004 20 TRP_LEO2 HE1 HE1 H 0 1 N N N 79.224 62.116 34.675 -2.515 -2.795 0.553 21 TRP_LEO2 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.612 1.991 -0.799 22 TRP_LEO2 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.496 -0.714 0.633 23 TRP_LEO2 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.795 3.040 -0.472 24 TRP_LEO2 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.728 1.697 0.242 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LEO2 N CA SING N N 1 TRP_LEO2 N H SING N N 2 TRP_LEO2 CA C SING N N 3 TRP_LEO2 CA CB SING N N 4 TRP_LEO2 CA HA SING N N 5 TRP_LEO2 C O DOUB N N 6 TRP_LEO2 C OXT SING N N 7 TRP_LEO2 CB CG SING N N 8 TRP_LEO2 CB HB2 SING N N 9 TRP_LEO2 CB HB3 SING N N 10 TRP_LEO2 CG CD1 DOUB Y N 11 TRP_LEO2 CG CD2 SING Y N 12 TRP_LEO2 CD1 NE1 SING Y N 13 TRP_LEO2 CD1 HD1 SING N N 14 TRP_LEO2 CD2 CE2 DOUB Y N 15 TRP_LEO2 CD2 CE3 SING Y N 16 TRP_LEO2 NE1 CE2 SING Y N 17 TRP_LEO2 NE1 HE1 SING N N 18 TRP_LEO2 CE2 CZ2 SING Y N 19 TRP_LEO2 CE3 CZ3 DOUB Y N 20 TRP_LEO2 CE3 HE3 SING N N 21 TRP_LEO2 CZ2 CH2 DOUB Y N 22 TRP_LEO2 CZ2 HZ2 SING N N 23 TRP_LEO2 CZ3 CH2 SING Y N 24 TRP_LEO2 CZ3 HZ3 SING N N 25 TRP_LEO2 CH2 HH2 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])Cc2c1ccccc1nc2 TRP_LEO2 InChI InChI 1.01 InChI=1/C11H11N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,12-13H,5H2,(H,14,15)/q-1/p-1/t9-/m0/s1 TRP_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]c2ccccc12)C([O-])=O TRP_LEO2 SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]c2ccccc12)C([O-])=O TRP_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)[O-])[NH-] TRP_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-(1H-indol-3-yl)propanoate TRP_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-(1H-indol-3-yl)propanoate # # data_TRP_LEO2_DHE1 # _chem_comp.id TRP_LEO2_DHE1 _chem_comp.name "L-TRYPTOPHAN-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H9 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 201.201 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LEO2_DHE1 N N N -1 1 N N N 74.708 60.512 32.843 1.400 1.219 0.894 1 TRP_LEO2_DHE1 CA CA C 0 1 N N S 74.400 61.735 32.114 1.996 -0.050 0.457 2 TRP_LEO2_DHE1 C C C 0 1 N N N 73.588 61.411 30.840 3.436 0.176 0.076 3 TRP_LEO2_DHE1 O O O 0 1 N N N 72.939 62.292 30.277 3.922 1.291 0.160 4 TRP_LEO2_DHE1 CB CB C 0 1 N N N 75.684 62.473 31.706 1.226 -0.586 -0.752 5 TRP_LEO2_DHE1 CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.183 -0.927 -0.339 6 TRP_LEO2_DHE1 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.635 -2.134 0.034 7 TRP_LEO2_DHE1 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.317 -0.003 -0.264 8 TRP_LEO2_DHE1 NE1 NE1 N -1 1 Y N N 78.403 62.494 34.247 -1.967 -2.060 0.337 9 TRP_LEO2_DHE1 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.415 -0.770 0.165 10 TRP_LEO2_DHE1 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.476 1.360 -0.519 11 TRP_LEO2_DHE1 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.652 -0.156 0.331 12 TRP_LEO2_DHE1 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.700 1.944 -0.350 13 TRP_LEO2_DHE1 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.787 1.191 0.075 14 TRP_LEO2_DHE1 OXT OXT O -1 1 N Y N 73.495 60.470 30.438 4.116 -0.757 -0.317 15 TRP_LEO2_DHE1 H H H 0 1 N N N 74.779 59.749 32.200 1.436 1.908 0.157 16 TRP_LEO2_DHE1 HA HA H 0 1 N N N 73.809 62.379 32.782 1.945 -0.774 1.270 17 TRP_LEO2_DHE1 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.202 0.175 -1.533 18 TRP_LEO2_DHE1 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.721 -1.480 -1.130 19 TRP_LEO2_DHE1 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.036 -3.032 0.088 20 TRP_LEO2_DHE1 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.635 1.952 -0.848 21 TRP_LEO2_DHE1 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.504 -0.733 0.659 22 TRP_LEO2_DHE1 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.823 2.998 -0.547 23 TRP_LEO2_DHE1 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.748 1.666 0.204 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LEO2_DHE1 N CA SING N N 1 TRP_LEO2_DHE1 N H SING N N 2 TRP_LEO2_DHE1 CA C SING N N 3 TRP_LEO2_DHE1 CA CB SING N N 4 TRP_LEO2_DHE1 CA HA SING N N 5 TRP_LEO2_DHE1 C O DOUB N N 6 TRP_LEO2_DHE1 C OXT SING N N 7 TRP_LEO2_DHE1 CB CG SING N N 8 TRP_LEO2_DHE1 CB HB2 SING N N 9 TRP_LEO2_DHE1 CB HB3 SING N N 10 TRP_LEO2_DHE1 CG CD1 DOUB Y N 11 TRP_LEO2_DHE1 CG CD2 SING Y N 12 TRP_LEO2_DHE1 CD1 NE1 SING Y N 13 TRP_LEO2_DHE1 CD1 HD1 SING N N 14 TRP_LEO2_DHE1 CD2 CE2 DOUB Y N 15 TRP_LEO2_DHE1 CD2 CE3 SING Y N 16 TRP_LEO2_DHE1 NE1 CE2 SING Y N 17 TRP_LEO2_DHE1 CE2 CZ2 SING Y N 18 TRP_LEO2_DHE1 CE3 CZ3 DOUB Y N 19 TRP_LEO2_DHE1 CE3 HE3 SING N N 20 TRP_LEO2_DHE1 CZ2 CH2 DOUB Y N 21 TRP_LEO2_DHE1 CZ2 HZ2 SING N N 22 TRP_LEO2_DHE1 CZ3 CH2 SING Y N 23 TRP_LEO2_DHE1 CZ3 HZ3 SING N N 24 TRP_LEO2_DHE1 CH2 HH2 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LEO2_DHE1 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])Cc1c2ccccc2[n-]c1 TRP_LEO2_DHE1 InChI InChI 1.01 InChI=1/C11H10N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,12H,5H2,(H,14,15)/q-2/p-1/t9-/m0/s1 TRP_LEO2_DHE1 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[n-]c2ccccc12)C([O-])=O TRP_LEO2_DHE1 SMILES CACTVS 3.341 [NH-][CH](Cc1c[n-]c2ccccc12)C([O-])=O TRP_LEO2_DHE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)C[C@@H](C(=O)[O-])[NH-] TRP_LEO2_DHE1 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)CC(C(=O)[O-])[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LEO2_DHE1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-indol-1-id-3-ylpropanoate TRP_LEO2_DHE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-indol-1-id-3-yl-propanoate # # data_TRP_LEO2H # _chem_comp.id TRP_LEO2H _chem_comp.name "L-TRYPTOPHAN C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H11 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 203.217 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LEO2H N N N -1 1 N N N 74.708 60.512 32.843 1.372 1.211 0.951 1 TRP_LEO2H CA CA C 0 1 N N S 74.400 61.735 32.114 1.977 -0.033 0.456 2 TRP_LEO2H C C C 0 1 N N N 73.588 61.411 30.840 3.416 0.220 0.087 3 TRP_LEO2H O O O 0 1 N N N 72.939 62.292 30.277 3.795 1.347 -0.127 4 TRP_LEO2H CB CB C 0 1 N N N 75.684 62.473 31.706 1.211 -0.516 -0.777 5 TRP_LEO2H CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.195 -0.886 -0.383 6 TRP_LEO2H CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.640 -2.112 -0.066 7 TRP_LEO2H CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.336 0.026 -0.266 8 TRP_LEO2H NE1 NE1 N 0 1 Y N N 78.403 62.494 34.247 -1.973 -2.062 0.238 9 TRP_LEO2H CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.430 -0.767 0.125 10 TRP_LEO2H CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.504 1.399 -0.458 11 TRP_LEO2H CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.671 -0.170 0.318 12 TRP_LEO2H CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.732 1.965 -0.263 13 TRP_LEO2H CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.815 1.187 0.124 14 TRP_LEO2H OXT OXT O 0 1 N Y N 73.495 60.470 30.438 4.276 -0.807 -0.002 15 TRP_LEO2H H H H 0 1 N N N 74.779 59.749 32.200 1.403 1.934 0.247 16 TRP_LEO2H HA HA H 0 1 N N N 73.809 62.379 32.782 1.929 -0.794 1.235 17 TRP_LEO2H HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.183 0.279 -1.522 18 TRP_LEO2H HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.712 -1.389 -1.197 19 TRP_LEO2H HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.035 -3.007 -0.054 20 TRP_LEO2H HE1 HE1 H 0 1 N N N 79.224 62.116 34.675 -2.515 -2.823 0.497 21 TRP_LEO2H HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.667 2.011 -0.758 22 TRP_LEO2H HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.519 -0.767 0.618 23 TRP_LEO2H HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.862 3.027 -0.411 24 TRP_LEO2H HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.779 1.649 0.275 25 TRP_LEO2H HXT HXT H 0 1 N Y N 72.905 60.500 29.694 5.188 -0.595 -0.242 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LEO2H N CA SING N N 1 TRP_LEO2H N H SING N N 2 TRP_LEO2H CA C SING N N 3 TRP_LEO2H CA CB SING N N 4 TRP_LEO2H CA HA SING N N 5 TRP_LEO2H C O DOUB N N 6 TRP_LEO2H C OXT SING N N 7 TRP_LEO2H CB CG SING N N 8 TRP_LEO2H CB HB2 SING N N 9 TRP_LEO2H CB HB3 SING N N 10 TRP_LEO2H CG CD1 DOUB Y N 11 TRP_LEO2H CG CD2 SING Y N 12 TRP_LEO2H CD1 NE1 SING Y N 13 TRP_LEO2H CD1 HD1 SING N N 14 TRP_LEO2H CD2 CE2 DOUB Y N 15 TRP_LEO2H CD2 CE3 SING Y N 16 TRP_LEO2H NE1 CE2 SING Y N 17 TRP_LEO2H NE1 HE1 SING N N 18 TRP_LEO2H CE2 CZ2 SING Y N 19 TRP_LEO2H CE3 CZ3 DOUB Y N 20 TRP_LEO2H CE3 HE3 SING N N 21 TRP_LEO2H CZ2 CH2 DOUB Y N 22 TRP_LEO2H CZ2 HZ2 SING N N 23 TRP_LEO2H CZ3 CH2 SING Y N 24 TRP_LEO2H CZ3 HZ3 SING N N 25 TRP_LEO2H CH2 HH2 SING N N 26 TRP_LEO2H OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])Cc2c1ccccc1nc2 TRP_LEO2H InChI InChI 1.01 InChI=1/C11H11N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,12-13H,5H2,(H,14,15)/q-1/t9-/m0/s1 TRP_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]c2ccccc12)C(O)=O TRP_LEO2H SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]c2ccccc12)C(O)=O TRP_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)[NH-] TRP_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-2-(1H-indol-3-yl)ethyl]azanide TRP_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-(1H-indol-3-yl)-1-oxo-propan-2-yl]azanide # # data_TRP_LEO2H_DHE1 # _chem_comp.id TRP_LEO2H_DHE1 _chem_comp.name "L-TRYPTOPHAN-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H10 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.209 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LEO2H_DHE1 N N N -1 1 N N N 74.708 60.512 32.843 1.353 1.211 0.946 1 TRP_LEO2H_DHE1 CA CA C 0 1 N N S 74.400 61.735 32.114 1.965 -0.032 0.457 2 TRP_LEO2H_DHE1 C C C 0 1 N N N 73.588 61.411 30.840 3.402 0.228 0.086 3 TRP_LEO2H_DHE1 O O O 0 1 N N N 72.939 62.292 30.277 3.774 1.356 -0.135 4 TRP_LEO2H_DHE1 CB CB C 0 1 N N N 75.684 62.473 31.706 1.201 -0.527 -0.773 5 TRP_LEO2H_DHE1 CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.203 -0.903 -0.376 6 TRP_LEO2H_DHE1 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.639 -2.131 -0.052 7 TRP_LEO2H_DHE1 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.349 0.002 -0.263 8 TRP_LEO2H_DHE1 NE1 NE1 N -1 1 Y N N 78.403 62.494 34.247 -1.972 -2.087 0.253 9 TRP_LEO2H_DHE1 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.437 -0.796 0.134 10 TRP_LEO2H_DHE1 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.526 1.373 -0.461 11 TRP_LEO2H_DHE1 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.682 -0.205 0.325 12 TRP_LEO2H_DHE1 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.757 1.932 -0.268 13 TRP_LEO2H_DHE1 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.834 1.149 0.124 14 TRP_LEO2H_DHE1 OXT OXT O 0 1 N Y N 73.495 60.470 30.438 4.268 -0.794 0.000 15 TRP_LEO2H_DHE1 H H H 0 1 N N N 74.779 59.749 32.200 1.379 1.929 0.238 16 TRP_LEO2H_DHE1 HA HA H 0 1 N N N 73.809 62.379 32.782 1.923 -0.790 1.239 17 TRP_LEO2H_DHE1 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.167 0.265 -1.522 18 TRP_LEO2H_DHE1 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.707 -1.398 -1.189 19 TRP_LEO2H_DHE1 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.028 -3.022 -0.036 20 TRP_LEO2H_DHE1 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.692 1.989 -0.765 21 TRP_LEO2H_DHE1 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.526 -0.806 0.629 22 TRP_LEO2H_DHE1 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.894 2.993 -0.421 23 TRP_LEO2H_DHE1 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.801 1.606 0.273 24 TRP_LEO2H_DHE1 HXT HXT H 0 1 N Y N 72.905 60.500 29.694 5.179 -0.577 -0.241 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LEO2H_DHE1 N CA SING N N 1 TRP_LEO2H_DHE1 N H SING N N 2 TRP_LEO2H_DHE1 CA C SING N N 3 TRP_LEO2H_DHE1 CA CB SING N N 4 TRP_LEO2H_DHE1 CA HA SING N N 5 TRP_LEO2H_DHE1 C O DOUB N N 6 TRP_LEO2H_DHE1 C OXT SING N N 7 TRP_LEO2H_DHE1 CB CG SING N N 8 TRP_LEO2H_DHE1 CB HB2 SING N N 9 TRP_LEO2H_DHE1 CB HB3 SING N N 10 TRP_LEO2H_DHE1 CG CD1 DOUB Y N 11 TRP_LEO2H_DHE1 CG CD2 SING Y N 12 TRP_LEO2H_DHE1 CD1 NE1 SING Y N 13 TRP_LEO2H_DHE1 CD1 HD1 SING N N 14 TRP_LEO2H_DHE1 CD2 CE2 DOUB Y N 15 TRP_LEO2H_DHE1 CD2 CE3 SING Y N 16 TRP_LEO2H_DHE1 NE1 CE2 SING Y N 17 TRP_LEO2H_DHE1 CE2 CZ2 SING Y N 18 TRP_LEO2H_DHE1 CE3 CZ3 DOUB Y N 19 TRP_LEO2H_DHE1 CE3 HE3 SING N N 20 TRP_LEO2H_DHE1 CZ2 CH2 DOUB Y N 21 TRP_LEO2H_DHE1 CZ2 HZ2 SING N N 22 TRP_LEO2H_DHE1 CZ3 CH2 SING Y N 23 TRP_LEO2H_DHE1 CZ3 HZ3 SING N N 24 TRP_LEO2H_DHE1 CH2 HH2 SING N N 25 TRP_LEO2H_DHE1 OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LEO2H_DHE1 SMILES ACDLabs 10.04 O=C(O)C([NH-])Cc1c2ccccc2[n-]c1 TRP_LEO2H_DHE1 InChI InChI 1.01 InChI=1/C11H10N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,12H,5H2,(H,14,15)/q-2/t9-/m0/s1 TRP_LEO2H_DHE1 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[n-]c2ccccc12)C(O)=O TRP_LEO2H_DHE1 SMILES CACTVS 3.341 [NH-][CH](Cc1c[n-]c2ccccc12)C(O)=O TRP_LEO2H_DHE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)C[C@@H](C(=O)O)[NH-] TRP_LEO2H_DHE1 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)CC(C(=O)O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LEO2H_DHE1 "SYSTEMATIC NAME" ACDLabs 10.04 3-[(2S)-2-azanidyl-2-carboxyethyl]indol-1-ide TRP_LEO2H_DHE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-indol-1-id-3-yl-1-oxo-propan-2-yl]azanide # # data_TRP_LFOH # _chem_comp.id TRP_LFOH _chem_comp.name "L-TRYPTOPHAN FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 204.225 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LFOH N N N 0 1 N N N 74.708 60.512 32.843 1.371 1.210 0.938 1 TRP_LFOH CA CA C 0 1 N N S 74.400 61.735 32.114 1.974 -0.037 0.449 2 TRP_LFOH C C C 0 1 N N N 73.588 61.411 30.840 3.414 0.214 0.079 3 TRP_LFOH O O O 0 1 N N N 72.939 62.292 30.277 3.794 1.339 -0.141 4 TRP_LFOH CB CB C 0 1 N N N 75.684 62.473 31.706 1.209 -0.526 -0.782 5 TRP_LFOH CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.198 -0.893 -0.385 6 TRP_LFOH CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.643 -2.118 -0.062 7 TRP_LFOH CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.338 0.020 -0.272 8 TRP_LFOH NE1 NE1 N 0 1 Y N N 78.403 62.494 34.247 -1.976 -2.065 0.242 9 TRP_LFOH CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.432 -0.771 0.123 10 TRP_LFOH CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.506 1.392 -0.470 11 TRP_LFOH CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.673 -0.172 0.314 12 TRP_LFOH CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.734 1.960 -0.278 13 TRP_LFOH CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.816 1.184 0.114 14 TRP_LFOH OXT OXT O 0 1 N Y N 73.495 60.470 30.438 4.273 -0.813 -0.006 15 TRP_LFOH HA HA H 0 1 N N N 73.809 62.379 32.782 1.927 -0.794 1.231 16 TRP_LFOH HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.180 0.266 -1.530 17 TRP_LFOH HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.709 -1.400 -1.197 18 TRP_LFOH HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.038 -3.013 -0.046 19 TRP_LFOH HE1 HE1 H 0 1 N N N 79.224 62.116 34.675 -2.518 -2.825 0.505 20 TRP_LFOH HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.668 2.002 -0.773 21 TRP_LFOH HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.521 -0.767 0.617 22 TRP_LFOH HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.863 3.021 -0.430 23 TRP_LFOH HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.780 1.647 0.263 24 TRP_LFOH HXT HXT H 0 1 N Y N 72.905 60.500 29.694 5.186 -0.603 -0.247 25 TRP_LFOH H1 H1 H 0 1 N N N 74.779 59.749 32.200 1.402 1.929 0.231 26 TRP_LFOH H2 H2 H 0 1 N N N 75.577 60.622 33.326 0.425 1.054 1.254 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LFOH N CA SING N N 1 TRP_LFOH CA C SING N N 2 TRP_LFOH CA CB SING N N 3 TRP_LFOH CA HA SING N N 4 TRP_LFOH C O DOUB N N 5 TRP_LFOH C OXT SING N N 6 TRP_LFOH CB CG SING N N 7 TRP_LFOH CB HB2 SING N N 8 TRP_LFOH CB HB3 SING N N 9 TRP_LFOH CG CD1 DOUB Y N 10 TRP_LFOH CG CD2 SING Y N 11 TRP_LFOH CD1 NE1 SING Y N 12 TRP_LFOH CD1 HD1 SING N N 13 TRP_LFOH CD2 CE2 DOUB Y N 14 TRP_LFOH CD2 CE3 SING Y N 15 TRP_LFOH NE1 CE2 SING Y N 16 TRP_LFOH NE1 HE1 SING N N 17 TRP_LFOH CE2 CZ2 SING Y N 18 TRP_LFOH CE3 CZ3 DOUB Y N 19 TRP_LFOH CE3 HE3 SING N N 20 TRP_LFOH CZ2 CH2 DOUB Y N 21 TRP_LFOH CZ2 HZ2 SING N N 22 TRP_LFOH CZ3 CH2 SING Y N 23 TRP_LFOH CZ3 HZ3 SING N N 24 TRP_LFOH CH2 HH2 SING N N 25 TRP_LFOH OXT HXT SING N N 26 TRP_LFOH H1 N SING N N 27 TRP_LFOH H2 N SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)Cc2c1ccccc1nc2 TRP_LFOH InChI InChI 1.01 InChI=1/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1 TRP_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1c[nH]c2ccccc12)C(O)=O TRP_LFOH SMILES CACTVS 3.341 N[CH](Cc1c[nH]c2ccccc12)C(O)=O TRP_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)N TRP_LFOH SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-tryptophan TRP_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(1H-indol-3-yl)propanoic acid" # # data_TRP_LFOH_DHE1 # _chem_comp.id TRP_LFOH_DHE1 _chem_comp.name "L-TRYPTOPHAN-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED NE1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H11 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 203.217 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LFOH_DHE1 N N N 0 1 N N N 74.708 60.512 32.843 1.349 1.209 0.922 1 TRP_LFOH_DHE1 CA CA C 0 1 N N S 74.400 61.735 32.114 1.957 -0.040 0.444 2 TRP_LFOH_DHE1 C C C 0 1 N N N 73.588 61.411 30.840 3.394 0.213 0.067 3 TRP_LFOH_DHE1 O O O 0 1 N N N 72.939 62.292 30.277 3.768 1.338 -0.166 4 TRP_LFOH_DHE1 CB CB C 0 1 N N N 75.684 62.473 31.706 1.189 -0.545 -0.780 5 TRP_LFOH_DHE1 CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.215 -0.914 -0.375 6 TRP_LFOH_DHE1 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.653 -2.137 -0.038 7 TRP_LFOH_DHE1 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.358 -0.005 -0.269 8 TRP_LFOH_DHE1 NE1 NE1 N -1 1 Y N N 78.403 62.494 34.247 -1.985 -2.087 0.269 9 TRP_LFOH_DHE1 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.447 -0.797 0.138 10 TRP_LFOH_DHE1 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.533 1.364 -0.480 11 TRP_LFOH_DHE1 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.691 -0.201 0.326 12 TRP_LFOH_DHE1 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.762 1.929 -0.290 13 TRP_LFOH_DHE1 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.840 1.152 0.113 14 TRP_LFOH_DHE1 OXT OXT O 0 1 N Y N 73.495 60.470 30.438 4.257 -0.812 -0.010 15 TRP_LFOH_DHE1 HA HA H 0 1 N N N 73.809 62.379 32.782 1.915 -0.790 1.234 16 TRP_LFOH_DHE1 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.155 0.239 -1.536 17 TRP_LFOH_DHE1 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.692 -1.422 -1.187 18 TRP_LFOH_DHE1 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.045 -3.029 -0.014 19 TRP_LFOH_DHE1 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.698 1.975 -0.792 20 TRP_LFOH_DHE1 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.535 -0.797 0.638 21 TRP_LFOH_DHE1 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.897 2.988 -0.453 22 TRP_LFOH_DHE1 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.806 1.613 0.259 23 TRP_LFOH_DHE1 HXT HXT H 0 1 N Y N 72.905 60.500 29.694 5.168 -0.600 -0.256 24 TRP_LFOH_DHE1 H1 H1 H 0 1 N N N 74.779 59.749 32.200 1.797 1.529 1.767 25 TRP_LFOH_DHE1 H2 H2 H 0 1 N N N 75.577 60.622 33.326 1.375 1.921 0.207 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LFOH_DHE1 N CA SING N N 1 TRP_LFOH_DHE1 CA C SING N N 2 TRP_LFOH_DHE1 CA CB SING N N 3 TRP_LFOH_DHE1 CA HA SING N N 4 TRP_LFOH_DHE1 C O DOUB N N 5 TRP_LFOH_DHE1 C OXT SING N N 6 TRP_LFOH_DHE1 CB CG SING N N 7 TRP_LFOH_DHE1 CB HB2 SING N N 8 TRP_LFOH_DHE1 CB HB3 SING N N 9 TRP_LFOH_DHE1 CG CD1 DOUB Y N 10 TRP_LFOH_DHE1 CG CD2 SING Y N 11 TRP_LFOH_DHE1 CD1 NE1 SING Y N 12 TRP_LFOH_DHE1 CD1 HD1 SING N N 13 TRP_LFOH_DHE1 CD2 CE2 DOUB Y N 14 TRP_LFOH_DHE1 CD2 CE3 SING Y N 15 TRP_LFOH_DHE1 NE1 CE2 SING Y N 16 TRP_LFOH_DHE1 CE2 CZ2 SING Y N 17 TRP_LFOH_DHE1 CE3 CZ3 DOUB Y N 18 TRP_LFOH_DHE1 CE3 HE3 SING N N 19 TRP_LFOH_DHE1 CZ2 CH2 DOUB Y N 20 TRP_LFOH_DHE1 CZ2 HZ2 SING N N 21 TRP_LFOH_DHE1 CZ3 CH2 SING Y N 22 TRP_LFOH_DHE1 CZ3 HZ3 SING N N 23 TRP_LFOH_DHE1 CH2 HH2 SING N N 24 TRP_LFOH_DHE1 OXT HXT SING N N 25 TRP_LFOH_DHE1 H1 N SING N N 26 TRP_LFOH_DHE1 H2 N SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LFOH_DHE1 SMILES ACDLabs 10.04 O=C(O)C(N)Cc1c2ccccc2[n-]c1 TRP_LFOH_DHE1 InChI InChI 1.01 InChI=1/C11H11N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9H,5,12H2,(H,14,15)/q-1/t9-/m0/s1 TRP_LFOH_DHE1 SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1c[n-]c2ccccc12)C(O)=O TRP_LFOH_DHE1 SMILES CACTVS 3.341 N[CH](Cc1c[n-]c2ccccc12)C(O)=O TRP_LFOH_DHE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)C[C@@H](C(=O)O)N TRP_LFOH_DHE1 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)CC(C(=O)O)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LFOH_DHE1 "SYSTEMATIC NAME" ACDLabs 10.04 3-indol-1-id-3-yl-L-alanine TRP_LFOH_DHE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-indol-1-id-3-yl-propanoic acid" # # data_TRP_LFZW # _chem_comp.id TRP_LFZW _chem_comp.name "L-TRYPTOPHAN FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 204.225 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LFZW N N N 1 1 N N N 74.708 60.512 32.843 1.414 1.214 0.866 1 TRP_LFZW CA CA C 0 1 N N S 74.400 61.735 32.114 1.997 -0.065 0.438 2 TRP_LFZW C C C 0 1 N N N 73.588 61.411 30.840 3.439 0.144 0.052 3 TRP_LFZW O O O 0 1 N N N 72.939 62.292 30.277 3.935 1.255 0.127 4 TRP_LFZW CB CB C 0 1 N N N 75.684 62.473 31.706 1.220 -0.602 -0.766 5 TRP_LFZW CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.191 -0.927 -0.349 6 TRP_LFZW CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.654 -2.127 0.035 7 TRP_LFZW CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.316 0.008 -0.279 8 TRP_LFZW NE1 NE1 N 0 1 Y N N 78.403 62.494 34.247 -1.985 -2.038 0.339 9 TRP_LFZW CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.421 -0.745 0.157 10 TRP_LFZW CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.463 1.372 -0.544 11 TRP_LFZW CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.652 -0.117 0.320 12 TRP_LFZW CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.681 1.967 -0.378 13 TRP_LFZW CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.775 1.229 0.054 14 TRP_LFZW OXT OXT O -1 1 N Y N 73.495 60.470 30.438 4.109 -0.798 -0.334 15 TRP_LFZW HA HA H 0 1 N N N 73.809 62.379 32.782 1.940 -0.783 1.256 16 TRP_LFZW HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.202 0.152 -1.553 17 TRP_LFZW HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.705 -1.504 -1.139 18 TRP_LFZW HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.064 -3.030 0.094 19 TRP_LFZW HE1 HE1 H 0 1 N N N 79.224 62.116 34.675 -2.539 -2.775 0.640 20 TRP_LFZW HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.617 1.953 -0.879 21 TRP_LFZW HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.509 -0.683 0.654 22 TRP_LFZW HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.794 3.022 -0.582 23 TRP_LFZW HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.731 1.714 0.181 24 TRP_LFZW H1 H1 H 0 1 N N N 74.779 59.749 32.200 1.467 1.878 0.108 25 TRP_LFZW H2 H2 H 0 1 N N N 75.577 60.622 33.326 0.449 1.074 1.123 26 TRP_LFZW H3 H3 H 0 1 N N N 73.980 60.325 33.503 1.926 1.568 1.659 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LFZW N CA SING N N 1 TRP_LFZW CA C SING N N 2 TRP_LFZW CA CB SING N N 3 TRP_LFZW CA HA SING N N 4 TRP_LFZW C O DOUB N N 5 TRP_LFZW C OXT SING N N 6 TRP_LFZW CB CG SING N N 7 TRP_LFZW CB HB2 SING N N 8 TRP_LFZW CB HB3 SING N N 9 TRP_LFZW CG CD1 DOUB Y N 10 TRP_LFZW CG CD2 SING Y N 11 TRP_LFZW CD1 NE1 SING Y N 12 TRP_LFZW CD1 HD1 SING N N 13 TRP_LFZW CD2 CE2 DOUB Y N 14 TRP_LFZW CD2 CE3 SING Y N 15 TRP_LFZW NE1 CE2 SING Y N 16 TRP_LFZW NE1 HE1 SING N N 17 TRP_LFZW CE2 CZ2 SING Y N 18 TRP_LFZW CE3 CZ3 DOUB Y N 19 TRP_LFZW CE3 HE3 SING N N 20 TRP_LFZW CZ2 CH2 DOUB Y N 21 TRP_LFZW CZ2 HZ2 SING N N 22 TRP_LFZW CZ3 CH2 SING Y N 23 TRP_LFZW CZ3 HZ3 SING N N 24 TRP_LFZW CH2 HH2 SING N N 25 TRP_LFZW H1 N SING N N 26 TRP_LFZW H2 N SING N N 27 TRP_LFZW H3 N SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])Cc2c1ccccc1nc2 TRP_LFZW InChI InChI 1.01 InChI=1/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1 TRP_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[nH]c2ccccc12)C([O-])=O TRP_LFZW SMILES CACTVS 3.341 [NH3+][CH](Cc1c[nH]c2ccccc12)C([O-])=O TRP_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)[O-])[NH3+] TRP_LFZW SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(1H-indol-3-yl)propanoate TRP_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-(1H-indol-3-yl)propanoate # # data_TRP_LFZW_DHE1 # _chem_comp.id TRP_LFZW_DHE1 _chem_comp.name "L-TRYPTOPHAN-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED NE1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H11 N2 O2" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 203.217 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LFZW_DHE1 N N N 1 1 N N N 74.708 60.512 32.843 1.395 1.215 0.859 1 TRP_LFZW_DHE1 CA CA C 0 1 N N S 74.400 61.735 32.114 1.985 -0.063 0.439 2 TRP_LFZW_DHE1 C C C 0 1 N N N 73.588 61.411 30.840 3.425 0.153 0.050 3 TRP_LFZW_DHE1 O O O 0 1 N N N 72.939 62.292 30.277 3.914 1.267 0.117 4 TRP_LFZW_DHE1 CB CB C 0 1 N N N 75.684 62.473 31.706 1.211 -0.613 -0.760 5 TRP_LFZW_DHE1 CG CG C 0 1 Y N N 76.675 62.727 32.832 -0.198 -0.944 -0.339 6 TRP_LFZW_DHE1 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.653 -2.145 0.053 7 TRP_LFZW_DHE1 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.329 -0.016 -0.275 8 TRP_LFZW_DHE1 NE1 NE1 N -1 1 Y N N 78.403 62.494 34.247 -1.984 -2.062 0.358 9 TRP_LFZW_DHE1 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.429 -0.773 0.168 10 TRP_LFZW_DHE1 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.485 1.344 -0.548 11 TRP_LFZW_DHE1 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.664 -0.152 0.329 12 TRP_LFZW_DHE1 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.707 1.934 -0.384 13 TRP_LFZW_DHE1 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.795 1.191 0.054 14 TRP_LFZW_DHE1 OXT OXT O -1 1 N Y N 73.495 60.470 30.438 4.101 -0.788 -0.331 15 TRP_LFZW_DHE1 HA HA H 0 1 N N N 73.809 62.379 32.782 1.934 -0.775 1.262 16 TRP_LFZW_DHE1 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.187 0.136 -1.552 17 TRP_LFZW_DHE1 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.701 -1.515 -1.128 18 TRP_LFZW_DHE1 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 -0.057 -3.043 0.118 19 TRP_LFZW_DHE1 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.643 1.929 -0.888 20 TRP_LFZW_DHE1 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.516 -0.722 0.668 21 TRP_LFZW_DHE1 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.827 2.986 -0.596 22 TRP_LFZW_DHE1 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.754 1.671 0.179 23 TRP_LFZW_DHE1 H1 H1 H 0 1 N N N 74.779 59.749 32.200 1.442 1.874 0.097 24 TRP_LFZW_DHE1 H2 H2 H 0 1 N N N 75.577 60.622 33.326 0.431 1.070 1.119 25 TRP_LFZW_DHE1 H3 H3 H 0 1 N N N 73.980 60.325 33.503 1.906 1.577 1.650 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LFZW_DHE1 N CA SING N N 1 TRP_LFZW_DHE1 CA C SING N N 2 TRP_LFZW_DHE1 CA CB SING N N 3 TRP_LFZW_DHE1 CA HA SING N N 4 TRP_LFZW_DHE1 C O DOUB N N 5 TRP_LFZW_DHE1 C OXT SING N N 6 TRP_LFZW_DHE1 CB CG SING N N 7 TRP_LFZW_DHE1 CB HB2 SING N N 8 TRP_LFZW_DHE1 CB HB3 SING N N 9 TRP_LFZW_DHE1 CG CD1 DOUB Y N 10 TRP_LFZW_DHE1 CG CD2 SING Y N 11 TRP_LFZW_DHE1 CD1 NE1 SING Y N 12 TRP_LFZW_DHE1 CD1 HD1 SING N N 13 TRP_LFZW_DHE1 CD2 CE2 DOUB Y N 14 TRP_LFZW_DHE1 CD2 CE3 SING Y N 15 TRP_LFZW_DHE1 NE1 CE2 SING Y N 16 TRP_LFZW_DHE1 CE2 CZ2 SING Y N 17 TRP_LFZW_DHE1 CE3 CZ3 DOUB Y N 18 TRP_LFZW_DHE1 CE3 HE3 SING N N 19 TRP_LFZW_DHE1 CZ2 CH2 DOUB Y N 20 TRP_LFZW_DHE1 CZ2 HZ2 SING N N 21 TRP_LFZW_DHE1 CZ3 CH2 SING Y N 22 TRP_LFZW_DHE1 CZ3 HZ3 SING N N 23 TRP_LFZW_DHE1 CH2 HH2 SING N N 24 TRP_LFZW_DHE1 H1 N SING N N 25 TRP_LFZW_DHE1 H2 N SING N N 26 TRP_LFZW_DHE1 H3 N SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LFZW_DHE1 SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])Cc1c2ccccc2[n-]c1 TRP_LFZW_DHE1 InChI InChI 1.01 InChI=1/C11H11N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9H,5,12H2,(H,14,15)/q-1/t9-/m0/s1 TRP_LFZW_DHE1 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[n-]c2ccccc12)C([O-])=O TRP_LFZW_DHE1 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[n-]c2ccccc12)C([O-])=O TRP_LFZW_DHE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)C[C@@H](C(=O)[O-])[NH3+] TRP_LFZW_DHE1 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)CC(C(=O)[O-])[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LFZW_DHE1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-indol-1-id-3-ylpropanoate TRP_LFZW_DHE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-indol-1-id-3-yl-propanoate # # data_TRP_LL # _chem_comp.id TRP_LL _chem_comp.name "L-TRYPTOPHAN - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H10 N2 O" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 186.210 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LL N N N -1 1 N N N 74.708 60.512 32.843 1.814 1.194 0.688 1 TRP_LL CA CA C 0 1 N N S 74.400 61.735 32.114 2.356 -0.084 0.205 2 TRP_LL C C C -1 1 N N N 73.588 61.411 30.840 3.771 0.119 -0.271 3 TRP_LL O O O 0 1 N N N 72.939 62.292 30.277 4.614 0.524 0.494 4 TRP_LL CB CB C 0 1 N N N 75.684 62.473 31.706 1.497 -0.598 -0.952 5 TRP_LL CG CG C 0 1 Y N N 76.675 62.727 32.832 0.113 -0.917 -0.447 6 TRP_LL CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.334 -2.119 -0.050 7 TRP_LL CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -0.997 0.026 -0.291 8 TRP_LL NE1 NE1 N 0 1 Y N N 78.403 62.494 34.247 -1.641 -2.024 0.342 9 TRP_LL CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.077 -0.725 0.207 10 TRP_LL CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.148 1.394 -0.528 11 TRP_LL CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.289 -0.090 0.459 12 TRP_LL CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.348 1.997 -0.274 13 TRP_LL CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.417 1.261 0.219 14 TRP_LL H H H 0 1 N N N 74.779 59.749 32.200 1.812 1.886 -0.046 15 TRP_LL HA HA H 0 1 N N N 73.809 62.379 32.782 2.346 -0.812 1.016 16 TRP_LL HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.434 0.167 -1.726 17 TRP_LL HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.949 -1.498 -1.368 18 TRP_LL HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 0.251 -3.027 -0.042 19 TRP_LL HE1 HE1 H 0 1 N N N 79.224 62.116 34.675 -2.180 -2.761 0.669 20 TRP_LL HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.321 1.973 -0.910 21 TRP_LL HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.127 -0.654 0.841 22 TRP_LL HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.465 3.055 -0.456 23 TRP_LL HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.359 1.752 0.415 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LL N CA SING N N 1 TRP_LL N H SING N N 2 TRP_LL CA C SING N N 3 TRP_LL CA CB SING N N 4 TRP_LL CA HA SING N N 5 TRP_LL C O DOUB N N 6 TRP_LL CB CG SING N N 7 TRP_LL CB HB2 SING N N 8 TRP_LL CB HB3 SING N N 9 TRP_LL CG CD1 DOUB Y N 10 TRP_LL CG CD2 SING Y N 11 TRP_LL CD1 NE1 SING Y N 12 TRP_LL CD1 HD1 SING N N 13 TRP_LL CD2 CE2 DOUB Y N 14 TRP_LL CD2 CE3 SING Y N 15 TRP_LL NE1 CE2 SING Y N 16 TRP_LL NE1 HE1 SING N N 17 TRP_LL CE2 CZ2 SING Y N 18 TRP_LL CE3 CZ3 DOUB Y N 19 TRP_LL CE3 HE3 SING N N 20 TRP_LL CZ2 CH2 DOUB Y N 21 TRP_LL CZ2 HZ2 SING N N 22 TRP_LL CZ3 CH2 SING Y N 23 TRP_LL CZ3 HZ3 SING N N 24 TRP_LL CH2 HH2 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])Cc2c1ccccc1nc2 TRP_LL InChI InChI 1.01 InChI=1/C11H10N2O/c12-9(7-14)5-8-6-13-11-4-2-1-3-10(8)11/h1-4,6,9,12-13H,5H2/q-2/t9-/m0/s1 TRP_LL SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[nH]c2ccccc12)[C-]=O TRP_LL SMILES CACTVS 3.341 [NH-][CH](Cc1c[nH]c2ccccc12)[C-]=O TRP_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H]([C-]=O)[NH-] TRP_LL SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-(1H-indol-3-ylmethyl)-2-oxoethan-2-idyl]azanide TRP_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-(1H-indol-3-yl)-3-oxo-propan-2-yl]azanide # # data_TRP_LL_DHE1 # _chem_comp.id TRP_LL_DHE1 _chem_comp.name "L-TRYPTOPHAN-LINKING EMBEDDED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H9 N2 O" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 185.202 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LL_DHE1 N N N -1 1 N N N 74.708 60.512 32.843 1.794 1.196 0.679 1 TRP_LL_DHE1 CA CA C 0 1 N N S 74.400 61.735 32.114 2.345 -0.081 0.206 2 TRP_LL_DHE1 C C C -1 1 N N N 73.588 61.411 30.840 3.758 0.128 -0.273 3 TRP_LL_DHE1 O O O 0 1 N N N 72.939 62.292 30.277 4.599 0.544 0.487 4 TRP_LL_DHE1 CB CB C 0 1 N N N 75.684 62.473 31.706 1.488 -0.610 -0.946 5 TRP_LL_DHE1 CG CG C 0 1 Y N N 76.675 62.727 32.832 0.107 -0.935 -0.436 6 TRP_LL_DHE1 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.331 -2.137 -0.029 7 TRP_LL_DHE1 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.009 0.002 -0.287 8 TRP_LL_DHE1 NE1 NE1 N -1 1 Y N N 78.403 62.494 34.247 -1.639 -2.047 0.364 9 TRP_LL_DHE1 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.084 -0.752 0.219 10 TRP_LL_DHE1 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.171 1.366 -0.534 11 TRP_LL_DHE1 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.299 -0.124 0.468 12 TRP_LL_DHE1 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.374 1.963 -0.283 13 TRP_LL_DHE1 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.437 1.224 0.218 14 TRP_LL_DHE1 H H H 0 1 N N N 74.779 59.749 32.200 1.787 1.883 -0.060 15 TRP_LL_DHE1 HA HA H 0 1 N N N 73.809 62.379 32.782 2.342 -0.803 1.023 16 TRP_LL_DHE1 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.419 0.148 -1.725 17 TRP_LL_DHE1 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.946 -1.511 -1.355 18 TRP_LL_DHE1 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 0.260 -3.040 -0.014 19 TRP_LL_DHE1 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.347 1.948 -0.921 20 TRP_LL_DHE1 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.133 -0.691 0.855 21 TRP_LL_DHE1 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.498 3.019 -0.474 22 TRP_LL_DHE1 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.382 1.710 0.411 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LL_DHE1 N CA SING N N 1 TRP_LL_DHE1 N H SING N N 2 TRP_LL_DHE1 CA C SING N N 3 TRP_LL_DHE1 CA CB SING N N 4 TRP_LL_DHE1 CA HA SING N N 5 TRP_LL_DHE1 C O DOUB N N 6 TRP_LL_DHE1 CB CG SING N N 7 TRP_LL_DHE1 CB HB2 SING N N 8 TRP_LL_DHE1 CB HB3 SING N N 9 TRP_LL_DHE1 CG CD1 DOUB Y N 10 TRP_LL_DHE1 CG CD2 SING Y N 11 TRP_LL_DHE1 CD1 NE1 SING Y N 12 TRP_LL_DHE1 CD1 HD1 SING N N 13 TRP_LL_DHE1 CD2 CE2 DOUB Y N 14 TRP_LL_DHE1 CD2 CE3 SING Y N 15 TRP_LL_DHE1 NE1 CE2 SING Y N 16 TRP_LL_DHE1 CE2 CZ2 SING Y N 17 TRP_LL_DHE1 CE3 CZ3 DOUB Y N 18 TRP_LL_DHE1 CE3 HE3 SING N N 19 TRP_LL_DHE1 CZ2 CH2 DOUB Y N 20 TRP_LL_DHE1 CZ2 HZ2 SING N N 21 TRP_LL_DHE1 CZ3 CH2 SING Y N 22 TRP_LL_DHE1 CZ3 HZ3 SING N N 23 TRP_LL_DHE1 CH2 HH2 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LL_DHE1 SMILES ACDLabs 10.04 O=[C-]C([NH-])Cc1c2ccccc2[n-]c1 TRP_LL_DHE1 InChI InChI 1.01 InChI=1/C11H9N2O/c12-9(7-14)5-8-6-13-11-4-2-1-3-10(8)11/h1-4,6,9,12H,5H2/q-3/t9-/m0/s1 TRP_LL_DHE1 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1c[n-]c2ccccc12)[C-]=O TRP_LL_DHE1 SMILES CACTVS 3.341 [NH-][CH](Cc1c[n-]c2ccccc12)[C-]=O TRP_LL_DHE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)C[C@@H]([C-]=O)[NH-] TRP_LL_DHE1 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)CC([C-]=O)[NH-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LL_DHE1 "SYSTEMATIC NAME" ACDLabs 10.04 3-[(2S)-2-azanidyl-3-oxopropan-3-idyl]indol-1-ide TRP_LL_DHE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-indol-1-id-3-yl-3-oxo-propan-2-yl]azanide # # data_TRP_LSN3 # _chem_comp.id TRP_LSN3 _chem_comp.name "L-TRYPTOPHAN N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H12 N2 O" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.226 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LSN3 N N N 1 1 N N N 74.708 60.512 32.843 1.805 1.179 0.652 1 TRP_LSN3 CA CA C 0 1 N N S 74.400 61.735 32.114 2.339 -0.107 0.185 2 TRP_LSN3 C C C -1 1 N N N 73.588 61.411 30.840 3.753 0.082 -0.300 3 TRP_LSN3 O O O 0 1 N N N 72.939 62.292 30.277 4.601 0.492 0.457 4 TRP_LSN3 CB CB C 0 1 N N N 75.684 62.473 31.706 1.473 -0.632 -0.962 5 TRP_LSN3 CG CG C 0 1 Y N N 76.675 62.727 32.832 0.089 -0.938 -0.448 6 TRP_LSN3 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.363 -2.132 -0.034 7 TRP_LSN3 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.015 0.013 -0.301 8 TRP_LSN3 NE1 NE1 N 0 1 Y N N 78.403 62.494 34.247 -1.668 -2.024 0.362 9 TRP_LSN3 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.098 -0.725 0.211 10 TRP_LSN3 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.161 1.379 -0.555 11 TRP_LSN3 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.305 -0.080 0.460 12 TRP_LSN3 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.356 1.991 -0.304 13 TRP_LSN3 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.427 1.268 0.202 14 TRP_LSN3 HA HA H 0 1 N N N 73.809 62.379 32.782 2.329 -0.825 1.005 15 TRP_LSN3 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.411 0.123 -1.746 16 TRP_LSN3 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.918 -1.540 -1.368 17 TRP_LSN3 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 0.218 -3.042 -0.015 18 TRP_LSN3 HE1 HE1 H 0 1 N N N 79.224 62.116 34.675 -2.209 -2.754 0.701 19 TRP_LSN3 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.332 1.948 -0.947 20 TRP_LSN3 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.145 -0.635 0.852 21 TRP_LSN3 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.468 3.047 -0.501 22 TRP_LSN3 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.365 1.766 0.396 23 TRP_LSN3 H1 H1 H 0 1 N N N 74.779 59.749 32.200 2.376 1.525 1.408 24 TRP_LSN3 H2 H2 H 0 1 N N N 75.577 60.622 33.326 1.814 1.843 -0.108 25 TRP_LSN3 H3 H3 H 0 1 N N N 73.980 60.325 33.503 0.858 1.052 0.976 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LSN3 N CA SING N N 1 TRP_LSN3 CA C SING N N 2 TRP_LSN3 CA CB SING N N 3 TRP_LSN3 CA HA SING N N 4 TRP_LSN3 C O DOUB N N 5 TRP_LSN3 CB CG SING N N 6 TRP_LSN3 CB HB2 SING N N 7 TRP_LSN3 CB HB3 SING N N 8 TRP_LSN3 CG CD1 DOUB Y N 9 TRP_LSN3 CG CD2 SING Y N 10 TRP_LSN3 CD1 NE1 SING Y N 11 TRP_LSN3 CD1 HD1 SING N N 12 TRP_LSN3 CD2 CE2 DOUB Y N 13 TRP_LSN3 CD2 CE3 SING Y N 14 TRP_LSN3 NE1 CE2 SING Y N 15 TRP_LSN3 NE1 HE1 SING N N 16 TRP_LSN3 CE2 CZ2 SING Y N 17 TRP_LSN3 CE3 CZ3 DOUB Y N 18 TRP_LSN3 CE3 HE3 SING N N 19 TRP_LSN3 CZ2 CH2 DOUB Y N 20 TRP_LSN3 CZ2 HZ2 SING N N 21 TRP_LSN3 CZ3 CH2 SING Y N 22 TRP_LSN3 CZ3 HZ3 SING N N 23 TRP_LSN3 CH2 HH2 SING N N 24 TRP_LSN3 H1 N SING N N 25 TRP_LSN3 H2 N SING N N 26 TRP_LSN3 H3 N SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])Cc2c1ccccc1nc2 TRP_LSN3 InChI InChI 1.01 InChI=1/C11H11N2O/c12-9(7-14)5-8-6-13-11-4-2-1-3-10(8)11/h1-4,6,9,13H,5,12H2/q-1/p+1/t9-/m0/s1 TRP_LSN3 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[nH]c2ccccc12)[C-]=O TRP_LSN3 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[nH]c2ccccc12)[C-]=O TRP_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)C[C@@H]([C-]=O)[NH3+] TRP_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[nH]2)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(1H-indol-3-yl)-1-oxopropan-1-ide TRP_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-(1H-indol-3-yl)-3-oxo-propan-2-yl]azanium # # data_TRP_LSN3_DHE1 # _chem_comp.id TRP_LSN3_DHE1 _chem_comp.name "L-TRYPTOPHAN-N-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NE1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H11 N2 O" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 187.218 _chem_comp.one_letter_code W _chem_comp.three_letter_code TRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TRP_LSN3_DHE1 N N N 1 1 N N N 74.708 60.512 32.843 1.786 1.182 0.643 1 TRP_LSN3_DHE1 CA CA C 0 1 N N S 74.400 61.735 32.114 2.328 -0.104 0.186 2 TRP_LSN3_DHE1 C C C -1 1 N N N 73.588 61.411 30.840 3.740 0.091 -0.302 3 TRP_LSN3_DHE1 O O O 0 1 N N N 72.939 62.292 30.277 4.586 0.513 0.450 4 TRP_LSN3_DHE1 CB CB C 0 1 N N N 75.684 62.473 31.706 1.464 -0.645 -0.955 5 TRP_LSN3_DHE1 CG CG C 0 1 Y N N 76.675 62.727 32.832 0.083 -0.956 -0.437 6 TRP_LSN3_DHE1 CD1 CD1 C 0 1 Y N N 77.753 61.964 33.157 -0.360 -2.149 -0.011 7 TRP_LSN3_DHE1 CD2 CD2 C 0 1 Y N N 76.646 63.805 33.777 -1.027 -0.011 -0.296 8 TRP_LSN3_DHE1 NE1 NE1 N -1 1 Y N N 78.403 62.494 34.247 -1.665 -2.047 0.385 9 TRP_LSN3_DHE1 CE2 CE2 C 0 1 Y N N 77.741 63.625 34.650 -2.104 -0.752 0.224 10 TRP_LSN3_DHE1 CE3 CE3 C 0 1 Y N N 75.796 64.902 33.974 -1.183 1.351 -0.561 11 TRP_LSN3_DHE1 CZ2 CZ2 C 0 1 Y N N 78.014 64.499 35.709 -3.316 -0.114 0.469 12 TRP_LSN3_DHE1 CZ3 CZ3 C 0 1 Y N N 76.065 65.776 35.031 -2.382 1.957 -0.313 13 TRP_LSN3_DHE1 CH2 CH2 C 0 1 Y N N 77.168 65.565 35.884 -3.447 1.230 0.201 14 TRP_LSN3_DHE1 HA HA H 0 1 N N N 73.809 62.379 32.782 2.324 -0.815 1.013 15 TRP_LSN3_DHE1 HB2 1HB H 0 1 N N N 76.193 61.859 30.948 1.395 0.104 -1.745 16 TRP_LSN3_DHE1 HB3 2HB H 0 1 N N N 75.368 63.463 31.346 1.916 -1.553 -1.354 17 TRP_LSN3_DHE1 HD1 HD1 H 0 1 N N N 78.056 61.069 32.634 0.227 -3.055 0.014 18 TRP_LSN3_DHE1 HE3 HE3 H 0 1 N N N 74.951 65.068 33.323 -0.358 1.923 -0.959 19 TRP_LSN3_DHE1 HZ2 HZ2 H 0 1 N N N 78.858 64.340 36.363 -4.151 -0.671 0.867 20 TRP_LSN3_DHE1 HZ3 HZ3 H 0 1 N N N 75.419 66.625 35.197 -2.502 3.011 -0.518 21 TRP_LSN3_DHE1 HH2 HH2 H 0 1 N N N 77.351 66.257 36.692 -4.389 1.724 0.391 22 TRP_LSN3_DHE1 H1 H1 H 0 1 N N N 74.779 59.749 32.200 1.789 1.840 -0.122 23 TRP_LSN3_DHE1 H2 H2 H 0 1 N N N 75.577 60.622 33.326 0.840 1.052 0.970 24 TRP_LSN3_DHE1 H3 H3 H 0 1 N N N 73.980 60.325 33.503 2.355 1.539 1.396 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRP_LSN3_DHE1 N CA SING N N 1 TRP_LSN3_DHE1 CA C SING N N 2 TRP_LSN3_DHE1 CA CB SING N N 3 TRP_LSN3_DHE1 CA HA SING N N 4 TRP_LSN3_DHE1 C O DOUB N N 5 TRP_LSN3_DHE1 CB CG SING N N 6 TRP_LSN3_DHE1 CB HB2 SING N N 7 TRP_LSN3_DHE1 CB HB3 SING N N 8 TRP_LSN3_DHE1 CG CD1 DOUB Y N 9 TRP_LSN3_DHE1 CG CD2 SING Y N 10 TRP_LSN3_DHE1 CD1 NE1 SING Y N 11 TRP_LSN3_DHE1 CD1 HD1 SING N N 12 TRP_LSN3_DHE1 CD2 CE2 DOUB Y N 13 TRP_LSN3_DHE1 CD2 CE3 SING Y N 14 TRP_LSN3_DHE1 NE1 CE2 SING Y N 15 TRP_LSN3_DHE1 CE2 CZ2 SING Y N 16 TRP_LSN3_DHE1 CE3 CZ3 DOUB Y N 17 TRP_LSN3_DHE1 CE3 HE3 SING N N 18 TRP_LSN3_DHE1 CZ2 CH2 DOUB Y N 19 TRP_LSN3_DHE1 CZ2 HZ2 SING N N 20 TRP_LSN3_DHE1 CZ3 CH2 SING Y N 21 TRP_LSN3_DHE1 CZ3 HZ3 SING N N 22 TRP_LSN3_DHE1 CH2 HH2 SING N N 23 TRP_LSN3_DHE1 H1 N SING N N 24 TRP_LSN3_DHE1 H2 N SING N N 25 TRP_LSN3_DHE1 H3 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRP_LSN3_DHE1 SMILES ACDLabs 10.04 O=[C-]C([NH3+])Cc1c2ccccc2[n-]c1 TRP_LSN3_DHE1 InChI InChI 1.01 InChI=1/C11H10N2O/c12-9(7-14)5-8-6-13-11-4-2-1-3-10(8)11/h1-4,6,9H,5,12H2/q-2/p+1/t9-/m0/s1 TRP_LSN3_DHE1 SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1c[n-]c2ccccc12)[C-]=O TRP_LSN3_DHE1 SMILES CACTVS 3.341 [NH3+][CH](Cc1c[n-]c2ccccc12)[C-]=O TRP_LSN3_DHE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)C[C@@H]([C-]=O)[NH3+] TRP_LSN3_DHE1 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c(c[n-]2)CC([C-]=O)[NH3+] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRP_LSN3_DHE1 "SYSTEMATIC NAME" ACDLabs 10.04 3-[(2S)-2-ammonio-3-oxopropan-3-idyl]indol-1-ide TRP_LSN3_DHE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-indol-1-id-3-yl-3-oxo-propan-2-yl]azanium # # data_TYR_LEO2 # _chem_comp.id TYR_LEO2 _chem_comp.name "L-TYROSINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H9 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.173 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LEO2 N N N -1 1 N N N 5.005 5.256 15.563 1.548 1.447 0.785 1 TYR_LEO2 CA CA C 0 1 N N S 5.326 6.328 16.507 1.765 0.039 0.425 2 TYR_LEO2 C C C 0 1 N N N 4.742 7.680 16.116 3.225 -0.184 0.128 3 TYR_LEO2 O O O 0 1 N N N 4.185 8.411 16.947 3.652 -1.317 -0.014 4 TYR_LEO2 CB CB C 0 1 N N N 6.836 6.389 16.756 0.934 -0.305 -0.813 5 TYR_LEO2 CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.532 -0.200 -0.479 6 TYR_LEO2 CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -1.195 1.001 -0.652 7 TYR_LEO2 CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -1.213 -1.306 -0.005 8 TYR_LEO2 CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.538 1.100 -0.347 9 TYR_LEO2 CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.556 -1.212 0.301 10 TYR_LEO2 CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -3.223 -0.007 0.134 11 TYR_LEO2 OH OH O 0 1 N N N 8.954 2.936 20.781 -4.544 0.088 0.436 12 TYR_LEO2 OXT OXT O -1 1 N Y N 4.840 8.051 14.829 3.980 0.768 0.028 13 TYR_LEO2 H H H 0 1 N N N 4.932 5.635 14.640 1.822 2.059 0.031 14 TYR_LEO2 HA HA H 0 1 N N N 4.833 6.077 17.458 1.462 -0.599 1.255 15 TYR_LEO2 HB2 1HB H 0 1 N N N 7.334 6.152 15.804 1.174 0.391 -1.617 16 TYR_LEO2 HB3 2HB H 0 1 N N N 7.035 7.399 17.143 1.162 -1.322 -1.132 17 TYR_LEO2 HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 -0.661 1.863 -1.026 18 TYR_LEO2 HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 -0.694 -2.244 0.125 19 TYR_LEO2 HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 -3.056 2.039 -0.482 20 TYR_LEO2 HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 -3.088 -2.077 0.671 21 TYR_LEO2 HH HH H 0 1 N N N 9.073 2.061 20.430 -5.132 -0.117 -0.304 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LEO2 N CA SING N N 1 TYR_LEO2 N H SING N N 2 TYR_LEO2 CA C SING N N 3 TYR_LEO2 CA CB SING N N 4 TYR_LEO2 CA HA SING N N 5 TYR_LEO2 C O DOUB N N 6 TYR_LEO2 C OXT SING N N 7 TYR_LEO2 CB CG SING N N 8 TYR_LEO2 CB HB2 SING N N 9 TYR_LEO2 CB HB3 SING N N 10 TYR_LEO2 CG CD1 DOUB Y N 11 TYR_LEO2 CG CD2 SING Y N 12 TYR_LEO2 CD1 CE1 SING Y N 13 TYR_LEO2 CD1 HD1 SING N N 14 TYR_LEO2 CD2 CE2 DOUB Y N 15 TYR_LEO2 CD2 HD2 SING N N 16 TYR_LEO2 CE1 CZ DOUB Y N 17 TYR_LEO2 CE1 HE1 SING N N 18 TYR_LEO2 CE2 CZ SING Y N 19 TYR_LEO2 CE2 HE2 SING N N 20 TYR_LEO2 CZ OH SING N N 21 TYR_LEO2 OH HH SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])Cc1ccc(O)cc1 TYR_LEO2 InChI InChI 1.01 InChI=1/C9H10NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,10-11H,5H2,(H,12,13)/q-1/p-1/t8-/m0/s1 TYR_LEO2 SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1ccc(O)cc1)C([O-])=O TYR_LEO2 SMILES CACTVS 3.341 [NH-][CH](Cc1ccc(O)cc1)C([O-])=O TYR_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)[O-])[NH-])O TYR_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)[O-])[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-(4-hydroxyphenyl)propanoate TYR_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-(4-hydroxyphenyl)propanoate # # data_TYR_LEO2_DHH # _chem_comp.id TYR_LEO2_DHH _chem_comp.name "L-TYROSINE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OH" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H8 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.165 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LEO2_DHH N N N -1 1 N N N 5.005 5.256 15.563 1.518 1.447 0.785 1 TYR_LEO2_DHH CA CA C 0 1 N N S 5.326 6.328 16.507 1.735 0.039 0.425 2 TYR_LEO2_DHH C C C 0 1 N N N 4.742 7.680 16.116 3.196 -0.183 0.130 3 TYR_LEO2_DHH O O O 0 1 N N N 4.185 8.411 16.947 3.624 -1.316 -0.011 4 TYR_LEO2_DHH CB CB C 0 1 N N N 6.836 6.389 16.756 0.906 -0.305 -0.813 5 TYR_LEO2_DHH CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.560 -0.200 -0.481 6 TYR_LEO2_DHH CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -1.223 1.000 -0.655 7 TYR_LEO2_DHH CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -1.241 -1.307 -0.009 8 TYR_LEO2_DHH CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.567 1.098 -0.351 9 TYR_LEO2_DHH CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.585 -1.214 0.296 10 TYR_LEO2_DHH CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -3.252 -0.009 0.129 11 TYR_LEO2_DHH OH OH O -1 1 N N N 8.954 2.936 20.781 -4.574 0.085 0.429 12 TYR_LEO2_DHH OXT OXT O -1 1 N Y N 4.840 8.051 14.829 3.951 0.770 0.032 13 TYR_LEO2_DHH H H H 0 1 N N N 4.932 5.635 14.640 1.792 2.059 0.032 14 TYR_LEO2_DHH HA HA H 0 1 N N N 4.833 6.077 17.458 1.431 -0.599 1.255 15 TYR_LEO2_DHH HB2 1HB H 0 1 N N N 7.334 6.152 15.804 1.147 0.391 -1.617 16 TYR_LEO2_DHH HB3 2HB H 0 1 N N N 7.035 7.399 17.143 1.135 -1.321 -1.133 17 TYR_LEO2_DHH HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 -0.690 1.862 -1.028 18 TYR_LEO2_DHH HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 -0.722 -2.245 0.122 19 TYR_LEO2_DHH HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 -3.085 2.036 -0.486 20 TYR_LEO2_DHH HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 -3.117 -2.079 0.664 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LEO2_DHH N CA SING N N 1 TYR_LEO2_DHH N H SING N N 2 TYR_LEO2_DHH CA C SING N N 3 TYR_LEO2_DHH CA CB SING N N 4 TYR_LEO2_DHH CA HA SING N N 5 TYR_LEO2_DHH C O DOUB N N 6 TYR_LEO2_DHH C OXT SING N N 7 TYR_LEO2_DHH CB CG SING N N 8 TYR_LEO2_DHH CB HB2 SING N N 9 TYR_LEO2_DHH CB HB3 SING N N 10 TYR_LEO2_DHH CG CD1 DOUB Y N 11 TYR_LEO2_DHH CG CD2 SING Y N 12 TYR_LEO2_DHH CD1 CE1 SING Y N 13 TYR_LEO2_DHH CD1 HD1 SING N N 14 TYR_LEO2_DHH CD2 CE2 DOUB Y N 15 TYR_LEO2_DHH CD2 HD2 SING N N 16 TYR_LEO2_DHH CE1 CZ DOUB Y N 17 TYR_LEO2_DHH CE1 HE1 SING N N 18 TYR_LEO2_DHH CE2 CZ SING Y N 19 TYR_LEO2_DHH CE2 HE2 SING N N 20 TYR_LEO2_DHH CZ OH SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LEO2_DHH SMILES ACDLabs 10.04 [O-]c1ccc(cc1)CC([NH-])C([O-])=O TYR_LEO2_DHH InChI InChI 1.01 InChI=1/C9H10NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,10-11H,5H2,(H,12,13)/q-1/p-2/t8-/m0/s1 TYR_LEO2_DHH SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1ccc([O-])cc1)C([O-])=O TYR_LEO2_DHH SMILES CACTVS 3.341 [NH-][CH](Cc1ccc([O-])cc1)C([O-])=O TYR_LEO2_DHH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)[O-])[NH-])[O-] TYR_LEO2_DHH SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)[O-])[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LEO2_DHH "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-3-(4-oxidophenyl)propanoate TYR_LEO2_DHH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-3-(4-oxidophenyl)propanoate # # data_TYR_LEO2H # _chem_comp.id TYR_LEO2H _chem_comp.name "L-TYROSINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H10 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.181 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LEO2H N N N -1 1 N N N 5.005 5.256 15.563 1.498 1.445 0.858 1 TYR_LEO2H CA CA C 0 1 N N S 5.326 6.328 16.507 1.734 0.060 0.428 2 TYR_LEO2H C C C 0 1 N N N 4.742 7.680 16.116 3.197 -0.128 0.122 3 TYR_LEO2H O O O 0 1 N N N 4.185 8.411 16.947 3.895 0.831 -0.107 4 TYR_LEO2H CB CB C 0 1 N N N 6.836 6.389 16.756 0.908 -0.232 -0.826 5 TYR_LEO2H CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.559 -0.164 -0.488 6 TYR_LEO2H CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -1.238 1.036 -0.601 7 TYR_LEO2H CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -1.225 -1.301 -0.071 8 TYR_LEO2H CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.583 1.101 -0.292 9 TYR_LEO2H CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.570 -1.241 0.238 10 TYR_LEO2H CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -3.252 -0.038 0.131 11 TYR_LEO2H OH OH O 0 1 N N N 8.954 2.936 20.781 -4.575 0.024 0.436 12 TYR_LEO2H OXT OXT O 0 1 N Y N 4.840 8.051 14.829 3.726 -1.362 0.102 13 TYR_LEO2H H H H 0 1 N N N 4.932 5.635 14.640 1.764 2.098 0.136 14 TYR_LEO2H HA HA H 0 1 N N N 4.833 6.077 17.458 1.439 -0.622 1.225 15 TYR_LEO2H HB2 1HB H 0 1 N N N 7.334 6.152 15.804 1.139 0.507 -1.593 16 TYR_LEO2H HB3 2HB H 0 1 N N N 7.035 7.399 17.143 1.150 -1.228 -1.196 17 TYR_LEO2H HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 -0.716 1.922 -0.931 18 TYR_LEO2H HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 -0.693 -2.238 0.012 19 TYR_LEO2H HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 -3.113 2.038 -0.380 20 TYR_LEO2H HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 -3.090 -2.130 0.563 21 TYR_LEO2H HH HH H 0 1 N N N 9.073 2.061 20.430 -5.160 -0.151 -0.314 22 TYR_LEO2H HXT HXT H 0 1 N Y N 4.433 8.902 14.712 4.669 -1.433 -0.100 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LEO2H N CA SING N N 1 TYR_LEO2H N H SING N N 2 TYR_LEO2H CA C SING N N 3 TYR_LEO2H CA CB SING N N 4 TYR_LEO2H CA HA SING N N 5 TYR_LEO2H C O DOUB N N 6 TYR_LEO2H C OXT SING N N 7 TYR_LEO2H CB CG SING N N 8 TYR_LEO2H CB HB2 SING N N 9 TYR_LEO2H CB HB3 SING N N 10 TYR_LEO2H CG CD1 DOUB Y N 11 TYR_LEO2H CG CD2 SING Y N 12 TYR_LEO2H CD1 CE1 SING Y N 13 TYR_LEO2H CD1 HD1 SING N N 14 TYR_LEO2H CD2 CE2 DOUB Y N 15 TYR_LEO2H CD2 HD2 SING N N 16 TYR_LEO2H CE1 CZ DOUB Y N 17 TYR_LEO2H CE1 HE1 SING N N 18 TYR_LEO2H CE2 CZ SING Y N 19 TYR_LEO2H CE2 HE2 SING N N 20 TYR_LEO2H CZ OH SING N N 21 TYR_LEO2H OH HH SING N N 22 TYR_LEO2H OXT HXT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])Cc1ccc(O)cc1 TYR_LEO2H InChI InChI 1.01 InChI=1/C9H10NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,10-11H,5H2,(H,12,13)/q-1/t8-/m0/s1 TYR_LEO2H SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1ccc(O)cc1)C(O)=O TYR_LEO2H SMILES CACTVS 3.341 [NH-][CH](Cc1ccc(O)cc1)C(O)=O TYR_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)O)[NH-])O TYR_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)O)[NH-])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxy-2-(4-hydroxyphenyl)ethyl]azanide TYR_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-3-(4-hydroxyphenyl)-1-oxo-propan-2-yl]azanide # # data_TYR_LEO2H_DHH # _chem_comp.id TYR_LEO2H_DHH _chem_comp.name "L-TYROSINE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED OH" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H9 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.173 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LEO2H_DHH N N N -1 1 N N N 5.005 5.256 15.563 1.467 1.445 0.859 1 TYR_LEO2H_DHH CA CA C 0 1 N N S 5.326 6.328 16.507 1.705 0.061 0.429 2 TYR_LEO2H_DHH C C C 0 1 N N N 4.742 7.680 16.116 3.168 -0.127 0.124 3 TYR_LEO2H_DHH O O O 0 1 N N N 4.185 8.411 16.947 3.866 0.833 -0.104 4 TYR_LEO2H_DHH CB CB C 0 1 N N N 6.836 6.389 16.756 0.880 -0.232 -0.826 5 TYR_LEO2H_DHH CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.587 -0.165 -0.491 6 TYR_LEO2H_DHH CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -1.267 1.034 -0.604 7 TYR_LEO2H_DHH CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -1.253 -1.303 -0.075 8 TYR_LEO2H_DHH CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.612 1.099 -0.297 9 TYR_LEO2H_DHH CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.599 -1.244 0.233 10 TYR_LEO2H_DHH CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -3.281 -0.041 0.126 11 TYR_LEO2H_DHH OH OH O -1 1 N N N 8.954 2.936 20.781 -4.605 0.020 0.429 12 TYR_LEO2H_DHH OXT OXT O 0 1 N Y N 4.840 8.051 14.829 3.697 -1.360 0.104 13 TYR_LEO2H_DHH H H H 0 1 N N N 4.932 5.635 14.640 1.734 2.098 0.138 14 TYR_LEO2H_DHH HA HA H 0 1 N N N 4.833 6.077 17.458 1.409 -0.623 1.225 15 TYR_LEO2H_DHH HB2 1HB H 0 1 N N N 7.334 6.152 15.804 1.112 0.507 -1.594 16 TYR_LEO2H_DHH HB3 2HB H 0 1 N N N 7.035 7.399 17.143 1.123 -1.228 -1.197 17 TYR_LEO2H_DHH HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 -0.746 1.921 -0.933 18 TYR_LEO2H_DHH HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 -0.721 -2.239 0.008 19 TYR_LEO2H_DHH HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 -3.143 2.035 -0.385 20 TYR_LEO2H_DHH HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 -3.118 -2.134 0.557 21 TYR_LEO2H_DHH HXT HXT H 0 1 N Y N 4.433 8.902 14.712 4.641 -1.430 -0.096 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LEO2H_DHH N CA SING N N 1 TYR_LEO2H_DHH N H SING N N 2 TYR_LEO2H_DHH CA C SING N N 3 TYR_LEO2H_DHH CA CB SING N N 4 TYR_LEO2H_DHH CA HA SING N N 5 TYR_LEO2H_DHH C O DOUB N N 6 TYR_LEO2H_DHH C OXT SING N N 7 TYR_LEO2H_DHH CB CG SING N N 8 TYR_LEO2H_DHH CB HB2 SING N N 9 TYR_LEO2H_DHH CB HB3 SING N N 10 TYR_LEO2H_DHH CG CD1 DOUB Y N 11 TYR_LEO2H_DHH CG CD2 SING Y N 12 TYR_LEO2H_DHH CD1 CE1 SING Y N 13 TYR_LEO2H_DHH CD1 HD1 SING N N 14 TYR_LEO2H_DHH CD2 CE2 DOUB Y N 15 TYR_LEO2H_DHH CD2 HD2 SING N N 16 TYR_LEO2H_DHH CE1 CZ DOUB Y N 17 TYR_LEO2H_DHH CE1 HE1 SING N N 18 TYR_LEO2H_DHH CE2 CZ SING Y N 19 TYR_LEO2H_DHH CE2 HE2 SING N N 20 TYR_LEO2H_DHH CZ OH SING N N 21 TYR_LEO2H_DHH OXT HXT SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LEO2H_DHH SMILES ACDLabs 10.04 [O-]c1ccc(cc1)CC([NH-])C(=O)O TYR_LEO2H_DHH InChI InChI 1.01 InChI=1/C9H10NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,10-11H,5H2,(H,12,13)/q-1/p-1/t8-/m0/s1 TYR_LEO2H_DHH SMILES_CANONICAL CACTVS 3.341 [NH-][C@@H](Cc1ccc([O-])cc1)C(O)=O TYR_LEO2H_DHH SMILES CACTVS 3.341 [NH-][CH](Cc1ccc([O-])cc1)C(O)=O TYR_LEO2H_DHH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)O)[NH-])[O-] TYR_LEO2H_DHH SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)O)[NH-])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LEO2H_DHH "SYSTEMATIC NAME" ACDLabs 10.04 4-[(2S)-2-azanidyl-2-carboxyethyl]phenolate TYR_LEO2H_DHH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-[(2S)-2-azanidyl-3-hydroxy-3-oxo-propyl]phenolate # # data_TYR_LFOH # _chem_comp.id TYR_LFOH _chem_comp.name "L-TYROSINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H11 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 181.189 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LFOH N N N 0 1 N N N 5.005 5.256 15.563 1.497 1.448 0.830 1 TYR_LFOH CA CA C 0 1 N N S 5.326 6.328 16.507 1.732 0.057 0.421 2 TYR_LFOH C C C 0 1 N N N 4.742 7.680 16.116 3.194 -0.137 0.116 3 TYR_LFOH O O O 0 1 N N N 4.185 8.411 16.947 3.893 0.818 -0.127 4 TYR_LFOH CB CB C 0 1 N N N 6.836 6.389 16.756 0.905 -0.254 -0.829 5 TYR_LFOH CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.562 -0.179 -0.492 6 TYR_LFOH CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -1.240 1.018 -0.622 7 TYR_LFOH CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -1.229 -1.310 -0.058 8 TYR_LFOH CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.585 1.089 -0.314 9 TYR_LFOH CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.574 -1.245 0.252 10 TYR_LFOH CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -3.255 -0.043 0.127 11 TYR_LFOH OH OH O 0 1 N N N 8.954 2.936 20.781 -4.578 0.025 0.432 12 TYR_LFOH OXT OXT O 0 1 N Y N 4.840 8.051 14.829 3.722 -1.372 0.115 13 TYR_LFOH HA HA H 0 1 N N N 4.833 6.077 17.458 1.436 -0.614 1.228 14 TYR_LFOH HB2 1HB H 0 1 N N N 7.334 6.152 15.804 1.136 0.473 -1.607 15 TYR_LFOH HB3 2HB H 0 1 N N N 7.035 7.399 17.143 1.145 -1.256 -1.184 16 TYR_LFOH HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 -0.718 1.899 -0.965 17 TYR_LFOH HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 -0.698 -2.246 0.040 18 TYR_LFOH HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 -3.114 2.025 -0.416 19 TYR_LFOH HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 -3.094 -2.128 0.590 20 TYR_LFOH HH HH H 0 1 N N N 9.073 2.061 20.430 -5.163 -0.161 -0.315 21 TYR_LFOH HXT HXT H 0 1 N Y N 4.433 8.902 14.712 4.665 -1.446 -0.086 22 TYR_LFOH H1 H1 H 0 1 N N N 4.932 5.635 14.640 1.763 2.090 0.098 23 TYR_LFOH H2 H2 H 0 1 N N N 5.729 4.566 15.584 0.535 1.588 1.101 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LFOH N CA SING N N 1 TYR_LFOH CA C SING N N 2 TYR_LFOH CA CB SING N N 3 TYR_LFOH CA HA SING N N 4 TYR_LFOH C O DOUB N N 5 TYR_LFOH C OXT SING N N 6 TYR_LFOH CB CG SING N N 7 TYR_LFOH CB HB2 SING N N 8 TYR_LFOH CB HB3 SING N N 9 TYR_LFOH CG CD1 DOUB Y N 10 TYR_LFOH CG CD2 SING Y N 11 TYR_LFOH CD1 CE1 SING Y N 12 TYR_LFOH CD1 HD1 SING N N 13 TYR_LFOH CD2 CE2 DOUB Y N 14 TYR_LFOH CD2 HD2 SING N N 15 TYR_LFOH CE1 CZ DOUB Y N 16 TYR_LFOH CE1 HE1 SING N N 17 TYR_LFOH CE2 CZ SING Y N 18 TYR_LFOH CE2 HE2 SING N N 19 TYR_LFOH CZ OH SING N N 20 TYR_LFOH OH HH SING N N 21 TYR_LFOH OXT HXT SING N N 22 TYR_LFOH H1 N SING N N 23 TYR_LFOH H2 N SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)Cc1ccc(O)cc1 TYR_LFOH InChI InChI 1.01 InChI=1/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/t8-/m0/s1 TYR_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1ccc(O)cc1)C(O)=O TYR_LFOH SMILES CACTVS 3.341 N[CH](Cc1ccc(O)cc1)C(O)=O TYR_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)O)N)O TYR_LFOH SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)O)N)O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-tyrosine TYR_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(4-hydroxyphenyl)propanoic acid" # # data_TYR_LFOH_DHH # _chem_comp.id TYR_LFOH_DHH _chem_comp.name "L-TYROSINE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED OH" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H10 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.181 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LFOH_DHH N N N 0 1 N N N 5.005 5.256 15.563 1.466 1.448 0.830 1 TYR_LFOH_DHH CA CA C 0 1 N N S 5.326 6.328 16.507 1.702 0.057 0.421 2 TYR_LFOH_DHH C C C 0 1 N N N 4.742 7.680 16.116 3.166 -0.136 0.118 3 TYR_LFOH_DHH O O O 0 1 N N N 4.185 8.411 16.947 3.864 0.820 -0.124 4 TYR_LFOH_DHH CB CB C 0 1 N N N 6.836 6.389 16.756 0.877 -0.254 -0.830 5 TYR_LFOH_DHH CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.590 -0.181 -0.494 6 TYR_LFOH_DHH CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -1.269 1.017 -0.625 7 TYR_LFOH_DHH CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -1.257 -1.312 -0.061 8 TYR_LFOH_DHH CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.614 1.087 -0.318 9 TYR_LFOH_DHH CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.602 -1.247 0.246 10 TYR_LFOH_DHH CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -3.284 -0.046 0.121 11 TYR_LFOH_DHH OH OH O -1 1 N N N 8.954 2.936 20.781 -4.607 0.020 0.424 12 TYR_LFOH_DHH OXT OXT O 0 1 N Y N 4.840 8.051 14.829 3.694 -1.370 0.117 13 TYR_LFOH_DHH HA HA H 0 1 N N N 4.833 6.077 17.458 1.406 -0.614 1.227 14 TYR_LFOH_DHH HB2 1HB H 0 1 N N N 7.334 6.152 15.804 1.109 0.474 -1.608 15 TYR_LFOH_DHH HB3 2HB H 0 1 N N N 7.035 7.399 17.143 1.119 -1.255 -1.185 16 TYR_LFOH_DHH HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 -0.748 1.898 -0.967 17 TYR_LFOH_DHH HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 -0.725 -2.247 0.036 18 TYR_LFOH_DHH HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 -3.144 2.022 -0.421 19 TYR_LFOH_DHH HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 -3.122 -2.132 0.584 20 TYR_LFOH_DHH HXT HXT H 0 1 N Y N 4.433 8.902 14.712 4.637 -1.444 -0.083 21 TYR_LFOH_DHH H1 H1 H 0 1 N N N 4.932 5.635 14.640 1.732 2.090 0.099 22 TYR_LFOH_DHH H2 H2 H 0 1 N N N 5.729 4.566 15.584 0.504 1.587 1.101 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LFOH_DHH N CA SING N N 1 TYR_LFOH_DHH CA C SING N N 2 TYR_LFOH_DHH CA CB SING N N 3 TYR_LFOH_DHH CA HA SING N N 4 TYR_LFOH_DHH C O DOUB N N 5 TYR_LFOH_DHH C OXT SING N N 6 TYR_LFOH_DHH CB CG SING N N 7 TYR_LFOH_DHH CB HB2 SING N N 8 TYR_LFOH_DHH CB HB3 SING N N 9 TYR_LFOH_DHH CG CD1 DOUB Y N 10 TYR_LFOH_DHH CG CD2 SING Y N 11 TYR_LFOH_DHH CD1 CE1 SING Y N 12 TYR_LFOH_DHH CD1 HD1 SING N N 13 TYR_LFOH_DHH CD2 CE2 DOUB Y N 14 TYR_LFOH_DHH CD2 HD2 SING N N 15 TYR_LFOH_DHH CE1 CZ DOUB Y N 16 TYR_LFOH_DHH CE1 HE1 SING N N 17 TYR_LFOH_DHH CE2 CZ SING Y N 18 TYR_LFOH_DHH CE2 HE2 SING N N 19 TYR_LFOH_DHH CZ OH SING N N 20 TYR_LFOH_DHH OXT HXT SING N N 21 TYR_LFOH_DHH H1 N SING N N 22 TYR_LFOH_DHH H2 N SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LFOH_DHH SMILES ACDLabs 10.04 [O-]c1ccc(cc1)CC(C(=O)O)N TYR_LFOH_DHH InChI InChI 1.01 InChI=1/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p-1/t8-/m0/s1 TYR_LFOH_DHH SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1ccc([O-])cc1)C(O)=O TYR_LFOH_DHH SMILES CACTVS 3.341 N[CH](Cc1ccc([O-])cc1)C(O)=O TYR_LFOH_DHH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)O)N)[O-] TYR_LFOH_DHH SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)O)N)[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LFOH_DHH "SYSTEMATIC NAME" ACDLabs 10.04 4-[(2S)-2-amino-2-carboxyethyl]phenolate TYR_LFOH_DHH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-[(2S)-2-amino-3-hydroxy-3-oxo-propyl]phenolate # # data_TYR_LFZW # _chem_comp.id TYR_LFZW _chem_comp.name "L-TYROSINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H11 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 181.189 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LFZW N N N 1 1 N N N 5.005 5.256 15.563 1.543 1.483 0.639 1 TYR_LFZW CA CA C 0 1 N N S 5.326 6.328 16.507 1.752 0.048 0.401 2 TYR_LFZW C C C 0 1 N N N 4.742 7.680 16.116 3.210 -0.207 0.119 3 TYR_LFZW O O O 0 1 N N N 4.185 8.411 16.947 4.002 0.720 0.117 4 TYR_LFZW CB CB C 0 1 N N N 6.836 6.389 16.756 0.915 -0.397 -0.799 5 TYR_LFZW CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.549 -0.257 -0.471 6 TYR_LFZW CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -1.208 0.928 -0.744 7 TYR_LFZW CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -1.233 -1.315 0.099 8 TYR_LFZW CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.550 1.059 -0.444 9 TYR_LFZW CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.576 -1.189 0.400 10 TYR_LFZW CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -3.237 0.001 0.133 11 TYR_LFZW OH OH O 0 1 N N N 8.954 2.936 20.781 -4.557 0.127 0.429 12 TYR_LFZW OXT OXT O -1 1 N Y N 4.840 8.051 14.829 3.598 -1.340 -0.106 13 TYR_LFZW HA HA H 0 1 N N N 4.833 6.077 17.458 1.449 -0.515 1.284 14 TYR_LFZW HB2 1HB H 0 1 N N N 7.334 6.152 15.804 1.155 0.226 -1.661 15 TYR_LFZW HB3 2HB H 0 1 N N N 7.035 7.399 17.143 1.137 -1.439 -1.031 16 TYR_LFZW HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 -0.672 1.752 -1.193 17 TYR_LFZW HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 -0.718 -2.241 0.307 18 TYR_LFZW HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 -3.063 1.985 -0.657 19 TYR_LFZW HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 -3.110 -2.016 0.845 20 TYR_LFZW HH HH H 0 1 N N N 9.073 2.061 20.430 -5.149 -0.138 -0.288 21 TYR_LFZW H1 H1 H 0 1 N N N 4.932 5.635 14.640 1.823 2.003 -0.178 22 TYR_LFZW H2 H2 H 0 1 N N N 5.729 4.566 15.584 0.566 1.653 0.828 23 TYR_LFZW H3 H3 H 0 1 N N N 4.135 4.835 15.820 2.095 1.776 1.431 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LFZW N CA SING N N 1 TYR_LFZW CA C SING N N 2 TYR_LFZW CA CB SING N N 3 TYR_LFZW CA HA SING N N 4 TYR_LFZW C O DOUB N N 5 TYR_LFZW C OXT SING N N 6 TYR_LFZW CB CG SING N N 7 TYR_LFZW CB HB2 SING N N 8 TYR_LFZW CB HB3 SING N N 9 TYR_LFZW CG CD1 DOUB Y N 10 TYR_LFZW CG CD2 SING Y N 11 TYR_LFZW CD1 CE1 SING Y N 12 TYR_LFZW CD1 HD1 SING N N 13 TYR_LFZW CD2 CE2 DOUB Y N 14 TYR_LFZW CD2 HD2 SING N N 15 TYR_LFZW CE1 CZ DOUB Y N 16 TYR_LFZW CE1 HE1 SING N N 17 TYR_LFZW CE2 CZ SING Y N 18 TYR_LFZW CE2 HE2 SING N N 19 TYR_LFZW CZ OH SING N N 20 TYR_LFZW OH HH SING N N 21 TYR_LFZW H1 N SING N N 22 TYR_LFZW H2 N SING N N 23 TYR_LFZW H3 N SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C(Cc1ccc(O)cc1)[NH3+] TYR_LFZW InChI InChI 1.01 InChI=1/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/t8-/m0/s1 TYR_LFZW SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1ccc(O)cc1)C([O-])=O TYR_LFZW SMILES CACTVS 3.341 [NH3+][CH](Cc1ccc(O)cc1)C([O-])=O TYR_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)[O-])[NH3+])O TYR_LFZW SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)[O-])[NH3+])O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(4-hydroxyphenyl)propanoate TYR_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-(4-hydroxyphenyl)propanoate # # data_TYR_LFZW_DHH # _chem_comp.id TYR_LFZW_DHH _chem_comp.name "L-TYROSINE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED OH" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H10 N O3" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.181 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LFZW_DHH N N N 1 1 N N N 5.005 5.256 15.563 -1.512 1.482 -0.640 1 TYR_LFZW_DHH CA CA C 0 1 N N S 5.326 6.328 16.507 -1.722 0.048 -0.402 2 TYR_LFZW_DHH C C C 0 1 N N N 4.742 7.680 16.116 -3.181 -0.206 -0.121 3 TYR_LFZW_DHH O O O 0 1 N N N 4.185 8.411 16.947 -3.972 0.722 -0.120 4 TYR_LFZW_DHH CB CB C 0 1 N N N 6.836 6.389 16.756 -0.887 -0.397 0.800 5 TYR_LFZW_DHH CG CG C 0 1 Y N N 7.377 5.438 17.795 0.577 -0.258 0.473 6 TYR_LFZW_DHH CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 1.236 0.927 0.747 7 TYR_LFZW_DHH CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 1.262 -1.316 -0.095 8 TYR_LFZW_DHH CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 2.579 1.057 0.448 9 TYR_LFZW_DHH CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 2.604 -1.191 -0.396 10 TYR_LFZW_DHH CZ CZ C 0 1 Y N N 8.439 3.756 19.805 3.266 -0.002 -0.127 11 TYR_LFZW_DHH OH OH O -1 1 N N N 8.954 2.936 20.781 4.586 0.124 -0.423 12 TYR_LFZW_DHH OXT OXT O -1 1 N Y N 4.840 8.051 14.829 -3.570 -1.339 0.104 13 TYR_LFZW_DHH HA HA H 0 1 N N N 4.833 6.077 17.458 -1.419 -0.515 -1.284 14 TYR_LFZW_DHH HB2 1HB H 0 1 N N N 7.334 6.152 15.804 -1.128 0.226 1.661 15 TYR_LFZW_DHH HB3 2HB H 0 1 N N N 7.035 7.399 17.143 -1.110 -1.439 1.032 16 TYR_LFZW_DHH HD1 HD1 H 0 1 N N N 5.981 6.002 19.304 0.701 1.751 1.194 17 TYR_LFZW_DHH HD2 HD2 H 0 1 N N N 8.950 4.627 16.586 0.746 -2.242 -0.304 18 TYR_LFZW_DHH HE1 HE1 H 0 1 N N N 6.817 4.486 21.021 3.093 1.982 0.662 19 TYR_LFZW_DHH HE2 HE2 H 0 1 N N N 9.912 3.229 18.345 3.138 -2.019 -0.839 20 TYR_LFZW_DHH H1 H1 H 0 1 N N N 4.932 5.635 14.640 -0.535 1.653 -0.828 21 TYR_LFZW_DHH H2 H2 H 0 1 N N N 5.729 4.566 15.584 -2.063 1.776 -1.432 22 TYR_LFZW_DHH H3 H3 H 0 1 N N N 4.135 4.835 15.820 -1.793 2.004 0.177 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYR_LFZW_DHH N CA SING N N 1 TYR_LFZW_DHH CA C SING N N 2 TYR_LFZW_DHH CA CB SING N N 3 TYR_LFZW_DHH CA HA SING N N 4 TYR_LFZW_DHH C O DOUB N N 5 TYR_LFZW_DHH C OXT SING N N 6 TYR_LFZW_DHH CB CG SING N N 7 TYR_LFZW_DHH CB HB2 SING N N 8 TYR_LFZW_DHH CB HB3 SING N N 9 TYR_LFZW_DHH CG CD1 DOUB Y N 10 TYR_LFZW_DHH CG CD2 SING Y N 11 TYR_LFZW_DHH CD1 CE1 SING Y N 12 TYR_LFZW_DHH CD1 HD1 SING N N 13 TYR_LFZW_DHH CD2 CE2 DOUB Y N 14 TYR_LFZW_DHH CD2 HD2 SING N N 15 TYR_LFZW_DHH CE1 CZ DOUB Y N 16 TYR_LFZW_DHH CE1 HE1 SING N N 17 TYR_LFZW_DHH CE2 CZ SING Y N 18 TYR_LFZW_DHH CE2 HE2 SING N N 19 TYR_LFZW_DHH CZ OH SING N N 20 TYR_LFZW_DHH H1 N SING N N 21 TYR_LFZW_DHH H2 N SING N N 22 TYR_LFZW_DHH H3 N SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYR_LFZW_DHH SMILES ACDLabs 10.04 [O-]c1ccc(cc1)CC(C([O-])=O)[NH3+] TYR_LFZW_DHH InChI InChI 1.01 InChI=1/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p-1/t8-/m0/s1 TYR_LFZW_DHH SMILES_CANONICAL CACTVS 3.341 [NH3+][C@@H](Cc1ccc([O-])cc1)C([O-])=O TYR_LFZW_DHH SMILES CACTVS 3.341 [NH3+][CH](Cc1ccc([O-])cc1)C([O-])=O TYR_LFZW_DHH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)[O-])[NH3+])[O-] TYR_LFZW_DHH SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)[O-])[NH3+])[O-] # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYR_LFZW_DHH "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-3-(4-oxidophenyl)propanoate TYR_LFZW_DHH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-3-(4-oxidophenyl)propanoate # # data_TYR_LL # _chem_comp.id TYR_LL _chem_comp.name "L-TYROSINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H9 N O2" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 163.173 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal TYR_LL N N N -1 1 N N N 5.005 5.256 15.563 1.981 1.301 0.630 1 TYR_LL CA CA C 0 1 N N S 5.326 6.328 16.507 2.131 -0.094 0.196 2 TYR_LL C C C -1 1 N N N 4.742 7.680 16.116 3.562 -0.346 -0.202 3 TYR_LL O O O 0 1 N N N 4.185 8.411 16.947 4.448 -0.195 0.604 4 TYR_LL CB CB C 0 1 N N N 6.836 6.389 16.756 1.215 -0.357 -1.001 5 TYR_LL CG CG C 0 1 Y N N 7.377 5.438 17.795 -0.224 -0.225 -0.572 6 TYR_LL CD1 CD1 C 0 1 Y N N 6.826 5.370 19.075 -0.857 1.002 -0.650 7 TYR_LL CD2 CD2 C 0 1 Y N N 8.493 4.624 17.565 -0.909 -1.331 -0.105 8 TYR_LL CE1 CE1 C 0 1 Y N N 7.308 4.536 20.061 -2.176 1.126 -0.257 9 TYR_LL CE2 CE2 C 0 1 Y N N 9.029 3.816 18.552 -2.228 -1.212 0.289 10 TYR_LL CZ CZ C 0 1 Y N N 8.439 3.756 19.805 -2.864 0.018 0.217 11 TYR_LL OH OH O 0 1 N N N 8.954 2.936 20.781 -4.161 0.138 0.604 12 TYR_LL H H H 0 1 N N N 4.932 5.635 14.640 2.228 1.939 -0.113 13 TYR_LL HA HA H 0 1 N N N 4.833 6.077 17.458 1.858 -0.760 1.015