data_ALA_LEO2 # _chem_comp.id ALA_LEO2 _chem_comp.name "L-ALALINE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 87.077 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LEO2 N N N -1 1 N N N 2.281 26.213 12.804 1.396 1.170 -0.129 1 ALA_LEO2 CA CA C 0 1 N N S 1.169 26.942 13.411 0.711 -0.098 -0.413 2 ALA_LEO2 C C C 0 1 N N N 1.539 28.344 13.874 -0.749 0.032 -0.065 3 ALA_LEO2 O O O 0 1 N N N 2.709 28.647 14.114 -1.180 1.082 0.379 4 ALA_LEO2 CB CB C 0 1 N N N 0.601 26.143 14.574 1.338 -1.215 0.423 5 ALA_LEO2 OXT OXT O -1 1 N Y N 0.523 29.194 13.997 -1.501 -0.915 -0.227 6 ALA_LEO2 H H H 0 1 N N N 2.083 26.047 11.838 2.378 1.109 -0.355 7 ALA_LEO2 HA HA H 0 1 N N N 0.410 27.066 12.624 0.812 -0.336 -1.472 8 ALA_LEO2 HB1 1HB H 0 1 N N N 0.464 25.095 14.268 0.830 -2.155 0.213 9 ALA_LEO2 HB2 2HB H 0 1 N N N 1.297 26.188 15.424 2.395 -1.308 0.171 10 ALA_LEO2 HB3 3HB H 0 1 N N N -0.369 26.568 14.871 1.237 -0.976 1.482 11 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LEO2 N CA SING N N 1 ALA_LEO2 N H SING N N 2 ALA_LEO2 CA C SING N N 3 ALA_LEO2 CA CB SING N N 4 ALA_LEO2 CA HA SING N N 5 ALA_LEO2 C O DOUB N N 6 ALA_LEO2 C OXT SING N N 7 ALA_LEO2 CB HB1 SING N N 8 ALA_LEO2 CB HB2 SING N N 9 ALA_LEO2 CB HB3 SING N N 10 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])C ALA_LEO2 SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH-])C([O-])=O ALA_LEO2 SMILES CACTVS 3.341 C[CH]([NH-])C([O-])=O ALA_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)[O-])[NH-] ALA_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)[O-])[NH-] ALA_LEO2 InChI InChI 1.02b InChI=1/C3H6NO2/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/q-1/p-1/t2-/m0/s1/fC3H5NO2/q-2 ALA_LEO2 InChIKey InChI 1.02b ZCUBUJADBNZFGL-SCFPBYOQDI # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidylpropanoate ALA_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidylpropanoate # data_ALA_LEO2H # _chem_comp.id ALA_LEO2H _chem_comp.name "L-ALALINE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 88.085 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LEO2H N N N -1 1 N N N 2.281 26.213 12.804 -1.526 1.015 0.428 1 ALA_LEO2H CA CA C 0 1 N N S 1.169 26.942 13.411 -0.727 -0.218 0.434 2 ALA_LEO2H C C C 0 1 N N N 1.539 28.344 13.874 0.690 0.100 0.034 3 ALA_LEO2H O O O 0 1 N N N 2.709 28.647 14.114 0.934 1.120 -0.566 4 ALA_LEO2H CB CB C 0 1 N N N 0.601 26.143 14.574 -1.325 -1.218 -0.558 5 ALA_LEO2H OXT OXT O 0 1 N Y N 0.523 29.194 13.997 1.682 -0.749 0.345 6 ALA_LEO2H H H H 0 1 N N N 2.083 26.047 11.838 -1.536 1.435 -0.489 7 ALA_LEO2H HA HA H 0 1 N N N 0.410 27.066 12.624 -0.734 -0.650 1.435 8 ALA_LEO2H HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.318 -0.785 -1.558 9 ALA_LEO2H HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -0.732 -2.133 -0.553 10 ALA_LEO2H HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.350 -1.448 -0.268 11 ALA_LEO2H HXT HXT H 0 1 N Y N 0.849 30.037 14.290 2.575 -0.502 0.067 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LEO2H N CA SING N N 1 ALA_LEO2H N H SING N N 2 ALA_LEO2H CA C SING N N 3 ALA_LEO2H CA CB SING N N 4 ALA_LEO2H CA HA SING N N 5 ALA_LEO2H C O DOUB N N 6 ALA_LEO2H C OXT SING N N 7 ALA_LEO2H CB HB1 SING N N 8 ALA_LEO2H CB HB2 SING N N 9 ALA_LEO2H CB HB3 SING N N 10 ALA_LEO2H OXT HXT SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])C ALA_LEO2H SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH-])C(O)=O ALA_LEO2H SMILES CACTVS 3.341 C[CH]([NH-])C(O)=O ALA_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)O)[NH-] ALA_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)O)[NH-] ALA_LEO2H InChI InChI 1.02b InChI=1/C3H6NO2/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/q-1/t2-/m0/s1/f/h5H ALA_LEO2H InChIKey InChI 1.02b ZCUBUJADBNZFGL-SNQCPAJUDO # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-carboxyethyl]azanide ALA_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-hydroxy-1-oxo-propan-2-yl]azanide # data_ALA_LFOH # _chem_comp.id ALA_LFOH _chem_comp.name "L-ALALINE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 89.093 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LFOH N N N 0 1 N N N 2.281 26.213 12.804 -1.555 0.996 0.180 1 ALA_LFOH CA CA C 0 1 N N S 1.169 26.942 13.411 -0.715 -0.184 0.426 2 ALA_LFOH C C C 0 1 N N N 1.539 28.344 13.874 0.713 0.131 0.062 3 ALA_LFOH O O O 0 1 N N N 2.709 28.647 14.114 1.001 1.226 -0.359 4 ALA_LFOH CB CB C 0 1 N N N 0.601 26.143 14.574 -1.214 -1.352 -0.428 5 ALA_LFOH OXT OXT O 0 1 N Y N 0.523 29.194 13.997 1.664 -0.805 0.206 6 ALA_LFOH HA HA H 0 1 N N N 0.410 27.066 12.624 -0.770 -0.455 1.481 7 ALA_LFOH HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.159 -1.080 -1.482 8 ALA_LFOH HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -0.591 -2.227 -0.245 9 ALA_LFOH HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.247 -1.579 -0.164 10 ALA_LFOH HXT HXT H 0 1 N Y N 0.849 30.037 14.290 2.565 -0.557 -0.040 11 ALA_LFOH H1 H1 H 0 1 N N N 2.083 26.047 11.838 -1.471 1.306 -0.776 12 ALA_LFOH H2 H2 H 0 1 N N N 3.118 26.755 12.884 -2.518 0.810 0.417 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LFOH N CA SING N N 1 ALA_LFOH CA C SING N N 2 ALA_LFOH CA CB SING N N 3 ALA_LFOH CA HA SING N N 4 ALA_LFOH C O DOUB N N 5 ALA_LFOH C OXT SING N N 6 ALA_LFOH CB HB1 SING N N 7 ALA_LFOH CB HB2 SING N N 8 ALA_LFOH CB HB3 SING N N 9 ALA_LFOH OXT HXT SING N N 10 ALA_LFOH H1 N SING N N 11 ALA_LFOH H2 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)C ALA_LFOH SMILES_CANONICAL CACTVS 3.341 C[C@H](N)C(O)=O ALA_LFOH SMILES CACTVS 3.341 C[CH](N)C(O)=O ALA_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)O)N ALA_LFOH SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)O)N ALA_LFOH InChI InChI 1.02b InChI=1/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1/f/h5H ALA_LFOH InChIKey InChI 1.02b QNAYBMKLOCPYGJ-SNQCPAJUDI # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 L-alanine ALA_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-aminopropanoic acid" # data_ALA_LFZW # _chem_comp.id ALA_LFZW _chem_comp.name "L-ALALINE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O2" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 89.093 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LFZW N N N 1 1 N N N 2.281 26.213 12.804 -1.442 1.041 0.134 1 ALA_LFZW CA CA C 0 1 N N S 1.169 26.942 13.411 -0.674 -0.179 0.418 2 ALA_LFZW C C C 0 1 N N N 1.539 28.344 13.874 0.774 0.046 0.064 3 ALA_LFZW O O O 0 1 N N N 2.709 28.647 14.114 1.133 1.122 -0.383 4 ALA_LFZW CB CB C 0 1 N N N 0.601 26.143 14.574 -1.228 -1.336 -0.414 5 ALA_LFZW OXT OXT O -1 1 N Y N 0.523 29.194 13.997 1.587 -0.849 0.225 6 ALA_LFZW HA HA H 0 1 N N N 0.410 27.066 12.624 -0.755 -0.421 1.477 7 ALA_LFZW HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.147 -1.094 -1.474 8 ALA_LFZW HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -0.658 -2.241 -0.204 9 ALA_LFZW HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.275 -1.499 -0.159 10 ALA_LFZW H1 H1 H 0 1 N N N 2.083 26.047 11.838 -1.076 1.804 0.683 11 ALA_LFZW H2 H2 H 0 1 N N N 3.118 26.755 12.884 -1.366 1.265 -0.847 12 ALA_LFZW H3 H3 H 0 1 N N N 2.403 25.339 13.275 -2.411 0.891 0.371 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LFZW N CA SING N N 1 ALA_LFZW CA C SING N N 2 ALA_LFZW CA CB SING N N 3 ALA_LFZW CA HA SING N N 4 ALA_LFZW C O DOUB N N 5 ALA_LFZW C OXT SING N N 6 ALA_LFZW CB HB1 SING N N 7 ALA_LFZW CB HB2 SING N N 8 ALA_LFZW CB HB3 SING N N 9 ALA_LFZW H1 N SING N N 10 ALA_LFZW H2 N SING N N 11 ALA_LFZW H3 N SING N N 12 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C([NH3+])C ALA_LFZW SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH3+])C([O-])=O ALA_LFZW SMILES CACTVS 3.341 C[CH]([NH3+])C([O-])=O ALA_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H](C(=O)[O-])[NH3+] ALA_LFZW SMILES "OpenEye OEToolkits" 1.5.0 CC(C(=O)[O-])[NH3+] ALA_LFZW InChI InChI 1.02b InChI=1/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1/f/h4H ALA_LFZW InChIKey InChI 1.02b QNAYBMKLOCPYGJ-YIHAPABYDO # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammoniopropanoate ALA_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumylpropanoate # data_ALA_LL # _chem_comp.id ALA_LL _chem_comp.name "L-ALALINE - LINKING EMBEDDED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H5 N O" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 71.078 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LL N N N -1 1 N N N 2.281 26.213 12.804 -0.573 1.402 -0.061 1 ALA_LL CA CA C 0 1 N N S 1.169 26.942 13.411 -0.437 0.005 0.374 2 ALA_LL C C C -1 1 N N N 1.539 28.344 13.874 0.814 -0.587 -0.222 3 ALA_LL O O O 0 1 N N N 2.709 28.647 14.114 1.890 -0.098 0.026 4 ALA_LL CB CB C 0 1 N N N 0.601 26.143 14.574 -1.654 -0.795 -0.096 5 ALA_LL H H H 0 1 N N N 2.083 26.047 11.838 -0.632 1.464 -1.066 6 ALA_LL HA HA H 0 1 N N N 0.410 27.066 12.624 -0.375 -0.032 1.461 7 ALA_LL HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -1.716 -0.757 -1.183 8 ALA_LL HB2 2HB H 0 1 N N N 1.297 26.188 15.424 -1.553 -1.831 0.227 9 ALA_LL HB3 3HB H 0 1 N N N -0.369 26.568 14.871 -2.559 -0.367 0.335 10 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LL N CA SING N N 1 ALA_LL N H SING N N 2 ALA_LL CA C SING N N 3 ALA_LL CA CB SING N N 4 ALA_LL CA HA SING N N 5 ALA_LL C O DOUB N N 6 ALA_LL CB HB1 SING N N 7 ALA_LL CB HB2 SING N N 8 ALA_LL CB HB3 SING N N 9 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LL SMILES ACDLabs 10.04 O=[C-]C([NH-])C ALA_LL SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH-])[C-]=O ALA_LL SMILES CACTVS 3.341 C[CH]([NH-])[C-]=O ALA_LL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]([C-]=O)[NH-] ALA_LL SMILES "OpenEye OEToolkits" 1.5.0 CC([C-]=O)[NH-] ALA_LL InChI InChI 1.02b InChI=1/C3H5NO/c1-3(4)2-5/h3-4H,1H3/q-2/t3-/m0/s1 ALA_LL InChIKey InChI 1.02b RDHYDLLLZRTCAV-VKHMYHEABE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LL "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-1-methyl-2-oxoethan-2-idyl]azanide ALA_LL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-oxopropan-2-yl]azanide # data_ALA_LSN3 # _chem_comp.id ALA_LSN3 _chem_comp.name "L-ALALINE N-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H7 N O" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 73.094 _chem_comp.one_letter_code A _chem_comp.three_letter_code ALA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ALA_LSN3 N N N 1 1 N N N 2.281 26.213 12.804 1.568 0.779 0.082 1 ALA_LSN3 CA CA C 0 1 N N S 1.169 26.942 13.411 0.404 0.002 -0.364 2 ALA_LSN3 C C C -1 1 N N N 1.539 28.344 13.874 -0.851 0.600 0.216 3 ALA_LSN3 O O O 0 1 N N N 2.709 28.647 14.114 -1.925 0.106 -0.030 4 ALA_LSN3 CB CB C 0 1 N N N 0.601 26.143 14.574 0.546 -1.446 0.111 5 ALA_LSN3 HA HA H 0 1 N N N 0.410 27.066 12.624 0.348 0.023 -1.452 6 ALA_LSN3 HB1 1HB H 0 1 N N N 0.464 25.095 14.268 -0.318 -2.023 -0.219 7 ALA_LSN3 HB2 2HB H 0 1 N N N 1.297 26.188 15.424 1.454 -1.878 -0.308 8 ALA_LSN3 HB3 3HB H 0 1 N N N -0.369 26.568 14.871 0.602 -1.467 1.199 9 ALA_LSN3 H1 H1 H 0 1 N N N 2.083 26.047 11.838 1.620 0.760 1.089 10 ALA_LSN3 H2 H2 H 0 1 N N N 3.118 26.755 12.884 2.409 0.379 -0.307 11 ALA_LSN3 H3 H3 H 0 1 N N N 2.403 25.339 13.275 1.475 1.734 -0.231 12 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA_LSN3 N CA SING N N 1 ALA_LSN3 CA C SING N N 2 ALA_LSN3 CA CB SING N N 3 ALA_LSN3 CA HA SING N N 4 ALA_LSN3 C O DOUB N N 5 ALA_LSN3 CB HB1 SING N N 6 ALA_LSN3 CB HB2 SING N N 7 ALA_LSN3 CB HB3 SING N N 8 ALA_LSN3 H1 N SING N N 9 ALA_LSN3 H2 N SING N N 10 ALA_LSN3 H3 N SING N N 11 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ALA_LSN3 SMILES ACDLabs 10.04 O=[C-]C([NH3+])C ALA_LSN3 SMILES_CANONICAL CACTVS 3.341 C[C@H]([NH3+])[C-]=O ALA_LSN3 SMILES CACTVS 3.341 C[CH]([NH3+])[C-]=O ALA_LSN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]([C-]=O)[NH3+] ALA_LSN3 SMILES "OpenEye OEToolkits" 1.5.0 CC([C-]=O)[NH3+] ALA_LSN3 InChI InChI 1.02b InChI=1/C3H6NO/c1-3(4)2-5/h3H,4H2,1H3/q-1/p+1/t3-/m0/s1/fC3H7NO/h4H/q ALA_LSN3 InChIKey InChI 1.02b WFJXBYDRXRKYAI-MWWAZTDNDQ # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ALA_LSN3 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-1-oxopropan-1-ide ALA_LSN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-1-oxopropan-2-yl]azanium # data_ARG_LEO2 # _chem_comp.id ARG_LEO2 _chem_comp.name "L-ARGININE C-TERMINAL DEPROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2 N N N -1 1 N N N 69.812 14.685 89.810 2.380 1.750 -0.358 1 ARG_LEO2 CA CA C 0 1 N N S 70.052 14.573 91.280 2.309 0.480 0.377 2 ARG_LEO2 C C C 0 1 N N N 71.542 14.389 91.604 3.544 -0.335 0.093 3 ARG_LEO2 O O O 0 1 N N N 72.354 14.342 90.659 3.774 -1.341 0.742 4 ARG_LEO2 CB CB C 0 1 N N N 69.227 13.419 91.854 1.070 -0.299 -0.069 5 ARG_LEO2 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.189 0.472 0.332 6 ARG_LEO2 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.428 -0.307 -0.114 7 ARG_LEO2 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.634 0.431 0.270 8 ARG_LEO2 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.869 -0.075 -0.027 9 ARG_LEO2 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -3.976 -1.240 -0.665 10 ARG_LEO2 NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 -4.965 0.596 0.322 11 ARG_LEO2 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 4.314 0.012 -0.787 12 ARG_LEO2 H H H 0 1 N N N 68.828 14.710 89.633 2.440 1.589 -1.352 13 ARG_LEO2 HA HA H 0 1 N N N 69.733 15.515 91.750 2.245 0.682 1.446 14 ARG_LEO2 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.090 -0.425 -1.151 15 ARG_LEO2 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.065 -1.278 0.410 16 ARG_LEO2 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.209 0.597 1.415 17 ARG_LEO2 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.184 1.451 -0.147 18 ARG_LEO2 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.408 -0.433 -1.196 19 ARG_LEO2 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.433 -1.286 0.365 20 ARG_LEO2 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.556 1.279 0.735 21 ARG_LEO2 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.178 -1.728 -0.919 22 ARG_LEO2 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.852 -1.599 -0.875 23 ARG_LEO2 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.887 1.444 0.787 24 ARG_LEO2 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.842 0.237 0.112 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2 N CA SING N N 1 ARG_LEO2 N H SING N N 2 ARG_LEO2 CA C SING N N 3 ARG_LEO2 CA CB SING N N 4 ARG_LEO2 CA HA SING N N 5 ARG_LEO2 C O DOUB N N 6 ARG_LEO2 C OXT SING N N 7 ARG_LEO2 CB CG SING N N 8 ARG_LEO2 CB HB2 SING N N 9 ARG_LEO2 CB HB3 SING N N 10 ARG_LEO2 CG CD SING N N 11 ARG_LEO2 CG HG2 SING N N 12 ARG_LEO2 CG HG3 SING N N 13 ARG_LEO2 CD NE SING N N 14 ARG_LEO2 CD HD2 SING N N 15 ARG_LEO2 CD HD3 SING N N 16 ARG_LEO2 NE CZ SING N N 17 ARG_LEO2 NE HE SING N N 18 ARG_LEO2 CZ NH1 SING N N 19 ARG_LEO2 CZ NH2 DOUB N N 20 ARG_LEO2 NH1 HH11 SING N N 21 ARG_LEO2 NH1 HH12 SING N N 22 ARG_LEO2 NH2 HH21 SING N N 23 ARG_LEO2 NH2 HH22 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(\N)=[NH2+] ARG_LEO2 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C([O-])=O ARG_LEO2 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C([O-])=O ARG_LEO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)[O-])[NH-])CNC(=[NH2+])N ARG_LEO2 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)[O-])[NH-])CNC(=[NH2+])N ARG_LEO2 InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1/f/h10H,8-9H2 ARG_LEO2 InChIKey InChI 1.02b YHGYUPIXTUWKFA-DQGZNMAIDC # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-azanidylpentanoate ARG_LEO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-[(amino-azaniumylidene-methyl)amino]-2-azanidyl-pentanoate # data_ARG_LEO2_DHH12 # _chem_comp.id ARG_LEO2_DHH12 _chem_comp.name "L-ARGININE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.185 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2_DHH12 N N N -1 1 N N N 69.812 14.685 89.810 2.362 1.749 -0.350 1 ARG_LEO2_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.285 0.476 0.379 2 ARG_LEO2_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.514 -0.346 0.086 3 ARG_LEO2_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 3.738 -1.357 0.729 4 ARG_LEO2_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.039 -0.292 -0.067 5 ARG_LEO2_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.213 0.485 0.343 6 ARG_LEO2_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.459 -0.283 -0.103 7 ARG_LEO2_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.658 0.461 0.290 8 ARG_LEO2_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.905 -0.037 -0.007 9 ARG_LEO2_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.972 0.625 0.342 10 ARG_LEO2_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.026 -1.235 -0.672 11 ARG_LEO2_DHH12 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 4.283 0.000 -0.794 12 ARG_LEO2_DHH12 H H H 0 1 N N N 68.828 14.710 89.633 2.417 1.593 -1.345 13 ARG_LEO2_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.227 0.673 1.449 14 ARG_LEO2_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.054 -0.412 -1.150 15 ARG_LEO2_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.029 -1.274 0.407 16 ARG_LEO2_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.228 0.605 1.426 17 ARG_LEO2_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.203 1.467 -0.131 18 ARG_LEO2_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.444 -0.403 -1.186 19 ARG_LEO2_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.469 -1.265 0.371 20 ARG_LEO2_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.573 1.306 0.759 21 ARG_LEO2_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -5.851 0.273 0.133 22 ARG_LEO2_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -3.232 -1.727 -0.931 23 ARG_LEO2_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -4.905 -1.586 -0.881 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2_DHH12 N CA SING N N 1 ARG_LEO2_DHH12 N H SING N N 2 ARG_LEO2_DHH12 CA C SING N N 3 ARG_LEO2_DHH12 CA CB SING N N 4 ARG_LEO2_DHH12 CA HA SING N N 5 ARG_LEO2_DHH12 C O DOUB N N 6 ARG_LEO2_DHH12 C OXT SING N N 7 ARG_LEO2_DHH12 CB CG SING N N 8 ARG_LEO2_DHH12 CB HB2 SING N N 9 ARG_LEO2_DHH12 CB HB3 SING N N 10 ARG_LEO2_DHH12 CG CD SING N N 11 ARG_LEO2_DHH12 CG HG2 SING N N 12 ARG_LEO2_DHH12 CG HG3 SING N N 13 ARG_LEO2_DHH12 CD NE SING N N 14 ARG_LEO2_DHH12 CD HD2 SING N N 15 ARG_LEO2_DHH12 CD HD3 SING N N 16 ARG_LEO2_DHH12 NE CZ SING N N 17 ARG_LEO2_DHH12 NE HE SING N N 18 ARG_LEO2_DHH12 CZ NH1 DOUB N N 19 ARG_LEO2_DHH12 CZ NH2 SING N N 20 ARG_LEO2_DHH12 NH1 HH11 SING N N 21 ARG_LEO2_DHH12 NH2 HH21 SING N N 22 ARG_LEO2_DHH12 NH2 HH22 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2_DHH12 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(=[N@H])N ARG_LEO2_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C([O-])=O ARG_LEO2_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C([O-])=O ARG_LEO2_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)[O-])[NH-] ARG_LEO2_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)[O-])[NH-] ARG_LEO2_DHH12 InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p-1/t4-/m0/s1/fC6H12N4O2/h8,10H,9H2/q-2/b8-6+ ARG_LEO2_DHH12 InChIKey InChI 1.02b YHGYUPIXTUWKFA-DUQDPMMJDB # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-5-carbamimidamidopentanoate ARG_LEO2_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-5-carbamimidamido-pentanoate # data_ARG_LEO2_DHH22 # _chem_comp.id ARG_LEO2_DHH22 _chem_comp.name "L-ARGININE-C-TERMINAL DEPROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.185 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2_DHH22 N N N -1 1 N N N 69.812 14.685 89.810 2.349 1.750 -0.344 1 ARG_LEO2_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.282 0.475 0.382 2 ARG_LEO2_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.522 -0.332 0.097 3 ARG_LEO2_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.382 0.114 -0.643 4 ARG_LEO2_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.048 -0.307 -0.074 5 ARG_LEO2_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.216 0.456 0.327 6 ARG_LEO2_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.450 -0.326 -0.129 7 ARG_LEO2_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.660 0.404 0.256 8 ARG_LEO2_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.899 -0.109 -0.051 9 ARG_LEO2_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -5.035 0.576 0.310 10 ARG_LEO2_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -3.996 -1.244 -0.683 11 ARG_LEO2_DHH22 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 3.665 -1.431 0.606 12 ARG_LEO2_DHH22 H H H 0 1 N N N 68.828 14.710 89.633 2.414 1.597 -1.339 13 ARG_LEO2_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.213 0.670 1.452 14 ARG_LEO2_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.073 -0.424 -1.158 15 ARG_LEO2_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.046 -1.289 0.398 16 ARG_LEO2_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.241 0.573 1.411 17 ARG_LEO2_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.214 1.438 -0.145 18 ARG_LEO2_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.425 -0.444 -1.212 19 ARG_LEO2_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.452 -1.309 0.344 20 ARG_LEO2_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.588 1.248 0.727 21 ARG_LEO2_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.963 1.421 0.781 22 ARG_LEO2_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -5.908 0.214 0.094 23 ARG_LEO2_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -3.194 -1.728 -0.938 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2_DHH22 N CA SING N N 1 ARG_LEO2_DHH22 N H SING N N 2 ARG_LEO2_DHH22 CA C SING N N 3 ARG_LEO2_DHH22 CA CB SING N N 4 ARG_LEO2_DHH22 CA HA SING N N 5 ARG_LEO2_DHH22 C O DOUB N N 6 ARG_LEO2_DHH22 C OXT SING N N 7 ARG_LEO2_DHH22 CB CG SING N N 8 ARG_LEO2_DHH22 CB HB2 SING N N 9 ARG_LEO2_DHH22 CB HB3 SING N N 10 ARG_LEO2_DHH22 CG CD SING N N 11 ARG_LEO2_DHH22 CG HG2 SING N N 12 ARG_LEO2_DHH22 CG HG3 SING N N 13 ARG_LEO2_DHH22 CD NE SING N N 14 ARG_LEO2_DHH22 CD HD2 SING N N 15 ARG_LEO2_DHH22 CD HD3 SING N N 16 ARG_LEO2_DHH22 NE CZ SING N N 17 ARG_LEO2_DHH22 NE HE SING N N 18 ARG_LEO2_DHH22 CZ NH1 SING N N 19 ARG_LEO2_DHH22 CZ NH2 DOUB N N 20 ARG_LEO2_DHH22 NH1 HH11 SING N N 21 ARG_LEO2_DHH22 NH1 HH12 SING N N 22 ARG_LEO2_DHH22 NH2 HH21 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2_DHH22 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(=[N@H])N ARG_LEO2_DHH22 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C([O-])=O ARG_LEO2_DHH22 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C([O-])=O ARG_LEO2_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H](C(=O)[O-])[NH-] ARG_LEO2_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)[O-])[NH-] ARG_LEO2_DHH22 InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p-1/t4-/m0/s1/fC6H12N4O2/h8,10H,9H2/q-2/b8-6- ARG_LEO2_DHH22 InChIKey InChI 1.02b YHGYUPIXTUWKFA-PUPNQWGNDF # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-azanidyl-5-carbamimidamidopentanoate ARG_LEO2_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azanidyl-5-carbamimidamido-pentanoate # data_ARG_LEO2H # _chem_comp.id ARG_LEO2H _chem_comp.name "L-ARGININE C-TERMINAL PROTONATED FRAGMENT" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H N N N -1 1 N N N 69.812 14.685 89.810 2.330 1.807 -0.309 1 ARG_LEO2H CA CA C 0 1 N N S 70.052 14.573 91.280 2.276 0.507 0.373 2 ARG_LEO2H C C C 0 1 N N N 71.542 14.389 91.604 3.518 -0.282 0.047 3 ARG_LEO2H O O O 0 1 N N N 72.354 14.342 90.659 4.176 0.000 -0.926 4 ARG_LEO2H CB CB C 0 1 N N N 69.227 13.419 91.854 1.043 -0.266 -0.098 5 ARG_LEO2H CG CG C 0 1 N N N 67.722 13.607 91.686 -0.222 0.475 0.342 6 ARG_LEO2H CD CD C 0 1 N N N 66.952 12.344 92.045 -1.455 -0.298 -0.129 7 ARG_LEO2H NE NE N 0 1 N N N 67.307 11.224 91.178 -2.666 0.410 0.292 8 ARG_LEO2H CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.898 -0.096 -0.019 9 ARG_LEO2H NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -3.997 -1.234 -0.704 10 ARG_LEO2H NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 -4.999 0.549 0.364 11 ARG_LEO2H OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.894 -1.298 0.840 12 ARG_LEO2H H H H 0 1 N N N 68.828 14.710 89.633 2.385 1.689 -1.310 13 ARG_LEO2H HA HA H 0 1 N N N 69.733 15.515 91.750 2.217 0.664 1.450 14 ARG_LEO2H HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.057 -0.345 -1.185 15 ARG_LEO2H HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.050 -1.264 0.339 16 ARG_LEO2H HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.236 0.554 1.429 17 ARG_LEO2H HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.229 1.473 -0.096 18 ARG_LEO2H HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.441 -0.378 -1.216 19 ARG_LEO2H HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.448 -1.296 0.308 20 ARG_LEO2H HE HE H 0 1 N N N 67.872 11.418 90.376 -2.594 1.239 0.791 21 ARG_LEO2H HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.195 -1.703 -0.983 22 ARG_LEO2H HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.871 -1.593 -0.925 23 ARG_LEO2H HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.927 1.377 0.864 24 ARG_LEO2H HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.873 0.189 0.144 25 ARG_LEO2H HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.698 -1.775 0.590 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H N CA SING N N 1 ARG_LEO2H N H SING N N 2 ARG_LEO2H CA C SING N N 3 ARG_LEO2H CA CB SING N N 4 ARG_LEO2H CA HA SING N N 5 ARG_LEO2H C O DOUB N N 6 ARG_LEO2H C OXT SING N N 7 ARG_LEO2H CB CG SING N N 8 ARG_LEO2H CB HB2 SING N N 9 ARG_LEO2H CB HB3 SING N N 10 ARG_LEO2H CG CD SING N N 11 ARG_LEO2H CG HG2 SING N N 12 ARG_LEO2H CG HG3 SING N N 13 ARG_LEO2H CD NE SING N N 14 ARG_LEO2H CD HD2 SING N N 15 ARG_LEO2H CD HD3 SING N N 16 ARG_LEO2H NE CZ SING N N 17 ARG_LEO2H NE HE SING N N 18 ARG_LEO2H CZ NH1 SING N N 19 ARG_LEO2H CZ NH2 DOUB N N 20 ARG_LEO2H NH1 HH11 SING N N 21 ARG_LEO2H NH1 HH12 SING N N 22 ARG_LEO2H NH2 HH21 SING N N 23 ARG_LEO2H NH2 HH22 SING N N 24 ARG_LEO2H OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCN\C(=[NH2+])N ARG_LEO2H SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C(O)=O ARG_LEO2H SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C(O)=O ARG_LEO2H SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)[NH-])CNC(=[NH2+])N ARG_LEO2H SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)[NH-])CNC(=[NH2+])N ARG_LEO2H InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p+1/t4-/m0/s1/fC6H14N4O2/h10-11H,8-9H2/q ARG_LEO2H InChIKey InChI 1.02b YHGYUPIXTUWKFA-SJOWTJEWDI # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-{[amino(iminio)methyl]amino}-1-carboxybutyl]azanide ARG_LEO2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-hydroxy-1-oxo-pentan-2-yl]azanide # data_ARG_LEO2H_DHH12 # _chem_comp.id ARG_LEO2H_DHH12 _chem_comp.name "L-ARGININE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H_DHH12 N N N -1 1 N N N 69.812 14.685 89.810 2.308 1.813 -0.264 1 ARG_LEO2H_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.259 0.495 0.384 2 ARG_LEO2H_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.506 -0.279 0.042 3 ARG_LEO2H_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.164 0.032 -0.922 4 ARG_LEO2H_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.031 -0.271 -0.110 5 ARG_LEO2H_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.239 0.451 0.345 6 ARG_LEO2H_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.467 -0.315 -0.150 7 ARG_LEO2H_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.683 0.377 0.287 8 ARG_LEO2H_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.918 -0.130 -0.042 9 ARG_LEO2H_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.007 -1.226 -0.742 10 ARG_LEO2H_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.058 0.519 0.367 11 ARG_LEO2H_DHH12 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.884 -1.314 0.809 12 ARG_LEO2H_DHH12 H H H 0 1 N N N 68.828 14.710 89.633 2.366 1.721 -1.267 13 ARG_LEO2H_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.196 0.624 1.465 14 ARG_LEO2H_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.048 -0.322 -1.199 15 ARG_LEO2H_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.042 -1.280 0.301 16 ARG_LEO2H_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.257 0.503 1.434 17 ARG_LEO2H_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.250 1.461 -0.066 18 ARG_LEO2H_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.449 -0.366 -1.238 19 ARG_LEO2H_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.456 -1.324 0.262 20 ARG_LEO2H_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.616 1.192 0.808 21 ARG_LEO2H_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.878 -1.584 -0.975 22 ARG_LEO2H_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.992 1.334 0.888 23 ARG_LEO2H_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.930 0.161 0.135 24 ARG_LEO2H_DHH12 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.691 -1.780 0.549 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H_DHH12 N CA SING N N 1 ARG_LEO2H_DHH12 N H SING N N 2 ARG_LEO2H_DHH12 CA C SING N N 3 ARG_LEO2H_DHH12 CA CB SING N N 4 ARG_LEO2H_DHH12 CA HA SING N N 5 ARG_LEO2H_DHH12 C O DOUB N N 6 ARG_LEO2H_DHH12 C OXT SING N N 7 ARG_LEO2H_DHH12 CB CG SING N N 8 ARG_LEO2H_DHH12 CB HB2 SING N N 9 ARG_LEO2H_DHH12 CB HB3 SING N N 10 ARG_LEO2H_DHH12 CG CD SING N N 11 ARG_LEO2H_DHH12 CG HG2 SING N N 12 ARG_LEO2H_DHH12 CG HG3 SING N N 13 ARG_LEO2H_DHH12 CD NE SING N N 14 ARG_LEO2H_DHH12 CD HD2 SING N N 15 ARG_LEO2H_DHH12 CD HD3 SING N N 16 ARG_LEO2H_DHH12 NE CZ SING N N 17 ARG_LEO2H_DHH12 NE HE SING N N 18 ARG_LEO2H_DHH12 CZ NH1 DOUB N N 19 ARG_LEO2H_DHH12 CZ NH2 SING N N 20 ARG_LEO2H_DHH12 NH1 HH11 SING N N 21 ARG_LEO2H_DHH12 NH2 HH21 SING N N 22 ARG_LEO2H_DHH12 NH2 HH22 SING N N 23 ARG_LEO2H_DHH12 OXT HXT SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H_DHH12 SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCNC(=[N@H])N ARG_LEO2H_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C(O)=O ARG_LEO2H_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C(O)=O ARG_LEO2H_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)O)[NH-] ARG_LEO2H_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)[NH-] ARG_LEO2H_DHH12 InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1/f/h8,10-11H,9H2/b8-6+ ARG_LEO2H_DHH12 InChIKey InChI 1.02b YHGYUPIXTUWKFA-GKBZDYMBDN # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-carbamimidamido-1-carboxybutyl]azanide ARG_LEO2H_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-hydroxy-1-oxo-pentan-2-yl]azanide # data_ARG_LEO2H_DHH22 # _chem_comp.id ARG_LEO2H_DHH22 _chem_comp.name "L-ARGININE-C-TERMINAL PROTONATED FRAGMENT/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H_DHH22 N N N -1 1 N N N 69.812 14.685 89.810 2.300 1.803 -0.327 1 ARG_LEO2H_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.244 0.510 0.368 2 ARG_LEO2H_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.483 -0.286 0.047 3 ARG_LEO2H_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.139 -0.016 -0.930 4 ARG_LEO2H_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.007 -0.263 -0.094 5 ARG_LEO2H_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.254 0.485 0.342 6 ARG_LEO2H_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.491 -0.288 -0.120 7 ARG_LEO2H_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.699 0.428 0.297 8 ARG_LEO2H_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.939 -0.080 -0.008 9 ARG_LEO2H_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.046 -1.260 -0.704 10 ARG_LEO2H_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.014 0.558 0.363 11 ARG_LEO2H_DHH22 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.857 -1.297 0.848 12 ARG_LEO2H_DHH22 H H H 0 1 N N N 68.828 14.710 89.633 2.353 1.675 -1.326 13 ARG_LEO2H_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.188 0.677 1.443 14 ARG_LEO2H_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.020 -0.354 -1.180 15 ARG_LEO2H_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.013 -1.258 0.353 16 ARG_LEO2H_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.266 0.575 1.428 17 ARG_LEO2H_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.259 1.479 -0.105 18 ARG_LEO2H_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.479 -0.378 -1.206 19 ARG_LEO2H_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.486 -1.282 0.327 20 ARG_LEO2H_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.623 1.261 0.789 21 ARG_LEO2H_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.247 -1.735 -0.981 22 ARG_LEO2H_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.922 -1.618 -0.920 23 ARG_LEO2H_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.938 1.391 0.855 24 ARG_LEO2H_DHH22 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.659 -1.778 0.602 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H_DHH22 N CA SING N N 1 ARG_LEO2H_DHH22 N H SING N N 2 ARG_LEO2H_DHH22 CA C SING N N 3 ARG_LEO2H_DHH22 CA CB SING N N 4 ARG_LEO2H_DHH22 CA HA SING N N 5 ARG_LEO2H_DHH22 C O DOUB N N 6 ARG_LEO2H_DHH22 C OXT SING N N 7 ARG_LEO2H_DHH22 CB CG SING N N 8 ARG_LEO2H_DHH22 CB HB2 SING N N 9 ARG_LEO2H_DHH22 CB HB3 SING N N 10 ARG_LEO2H_DHH22 CG CD SING N N 11 ARG_LEO2H_DHH22 CG HG2 SING N N 12 ARG_LEO2H_DHH22 CG HG3 SING N N 13 ARG_LEO2H_DHH22 CD NE SING N N 14 ARG_LEO2H_DHH22 CD HD2 SING N N 15 ARG_LEO2H_DHH22 CD HD3 SING N N 16 ARG_LEO2H_DHH22 NE CZ SING N N 17 ARG_LEO2H_DHH22 NE HE SING N N 18 ARG_LEO2H_DHH22 CZ NH1 SING N N 19 ARG_LEO2H_DHH22 CZ NH2 DOUB N N 20 ARG_LEO2H_DHH22 NH1 HH11 SING N N 21 ARG_LEO2H_DHH22 NH1 HH12 SING N N 22 ARG_LEO2H_DHH22 NH2 HH21 SING N N 23 ARG_LEO2H_DHH22 OXT HXT SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H_DHH22 SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCNC(=[N@H])N ARG_LEO2H_DHH22 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH-])C(O)=O ARG_LEO2H_DHH22 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH-])C(O)=O ARG_LEO2H_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H](C(=O)O)[NH-] ARG_LEO2H_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)[NH-] ARG_LEO2H_DHH22 InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1/f/h8,10-11H,9H2/b8-6- ARG_LEO2H_DHH22 InChIKey InChI 1.02b YHGYUPIXTUWKFA-BRXOTDAPDL # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-carbamimidamido-1-carboxybutyl]azanide ARG_LEO2H_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-carbamimidamido-1-hydroxy-1-oxo-pentan-2-yl]azanide # data_ARG_LEO2H_RNH1 # _chem_comp.id ARG_LEO2H_RNH1 _chem_comp.name "L-ARGININE-C-TERMINAL PROTONATED FRAGMENT/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2H_RNH1 N N N -1 1 N N N 69.812 14.685 89.810 2.330 1.807 -0.309 1 ARG_LEO2H_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 2.276 0.507 0.373 2 ARG_LEO2H_RNH1 C C C 0 1 N N N 71.542 14.389 91.604 3.518 -0.282 0.047 3 ARG_LEO2H_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 4.176 0.000 -0.926 4 ARG_LEO2H_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 1.043 -0.266 -0.098 5 ARG_LEO2H_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.222 0.475 0.342 6 ARG_LEO2H_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.455 -0.298 -0.129 7 ARG_LEO2H_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.666 0.410 0.292 8 ARG_LEO2H_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.898 -0.096 -0.019 9 ARG_LEO2H_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 -3.997 -1.234 -0.704 10 ARG_LEO2H_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.999 0.549 0.364 11 ARG_LEO2H_RNH1 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.894 -1.298 0.840 12 ARG_LEO2H_RNH1 H H H 0 1 N N N 68.828 14.710 89.633 2.385 1.689 -1.310 13 ARG_LEO2H_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 2.217 0.664 1.450 14 ARG_LEO2H_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.057 -0.345 -1.185 15 ARG_LEO2H_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.050 -1.264 0.339 16 ARG_LEO2H_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.236 0.554 1.429 17 ARG_LEO2H_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.229 1.473 -0.096 18 ARG_LEO2H_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.441 -0.378 -1.216 19 ARG_LEO2H_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.448 -1.296 0.308 20 ARG_LEO2H_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.594 1.239 0.791 21 ARG_LEO2H_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.871 -1.593 -0.925 22 ARG_LEO2H_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -3.195 -1.703 -0.983 23 ARG_LEO2H_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.927 1.377 0.864 24 ARG_LEO2H_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.873 0.189 0.144 25 ARG_LEO2H_RNH1 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.698 -1.775 0.590 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2H_RNH1 N CA SING N N 1 ARG_LEO2H_RNH1 N H SING N N 2 ARG_LEO2H_RNH1 CA C SING N N 3 ARG_LEO2H_RNH1 CA CB SING N N 4 ARG_LEO2H_RNH1 CA HA SING N N 5 ARG_LEO2H_RNH1 C O DOUB N N 6 ARG_LEO2H_RNH1 C OXT SING N N 7 ARG_LEO2H_RNH1 CB CG SING N N 8 ARG_LEO2H_RNH1 CB HB2 SING N N 9 ARG_LEO2H_RNH1 CB HB3 SING N N 10 ARG_LEO2H_RNH1 CG CD SING N N 11 ARG_LEO2H_RNH1 CG HG2 SING N N 12 ARG_LEO2H_RNH1 CG HG3 SING N N 13 ARG_LEO2H_RNH1 CD NE SING N N 14 ARG_LEO2H_RNH1 CD HD2 SING N N 15 ARG_LEO2H_RNH1 CD HD3 SING N N 16 ARG_LEO2H_RNH1 NE CZ SING N N 17 ARG_LEO2H_RNH1 NE HE SING N N 18 ARG_LEO2H_RNH1 CZ NH1 DOUB N N 19 ARG_LEO2H_RNH1 CZ NH2 SING N N 20 ARG_LEO2H_RNH1 NH1 HH11 SING N N 21 ARG_LEO2H_RNH1 NH1 HH12 SING N N 22 ARG_LEO2H_RNH1 NH2 HH21 SING N N 23 ARG_LEO2H_RNH1 NH2 HH22 SING N N 24 ARG_LEO2H_RNH1 OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2H_RNH1 SMILES ACDLabs 10.04 O=C(O)C([NH-])CCCN\C(=[NH2+])N ARG_LEO2H_RNH1 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C(O)=O ARG_LEO2H_RNH1 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C(O)=O ARG_LEO2H_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)[NH-])CNC(=[NH2+])N ARG_LEO2H_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)[NH-])CNC(=[NH2+])N ARG_LEO2H_RNH1 InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/p+1/t4-/m0/s1/fC6H14N4O2/h10-11H,8-9H2/q ARG_LEO2H_RNH1 InChIKey InChI 1.02b YHGYUPIXTUWKFA-SJOWTJEWDI # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2H_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 [(1S)-4-{[amino(iminio)methyl]amino}-1-carboxybutyl]azanide ARG_LEO2H_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [(2S)-5-[(amino-azaniumylidene-methyl)amino]-1-hydroxy-1-oxo-pentan-2-yl]azanide # data_ARG_LEO2_RNH1 # _chem_comp.id ARG_LEO2_RNH1 _chem_comp.name "L-ARGININE-C-TERMINAL DEPROTONATED FRAGMENT/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.193 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LEO2_RNH1 N N N -1 1 N N N 69.812 14.685 89.810 2.380 1.750 -0.358 1 ARG_LEO2_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 2.309 0.480 0.377 2 ARG_LEO2_RNH1 C C C 0 1 N N N 71.542 14.389 91.604 3.544 -0.335 0.093 3 ARG_LEO2_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 3.774 -1.341 0.742 4 ARG_LEO2_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 1.070 -0.299 -0.069 5 ARG_LEO2_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.189 0.472 0.332 6 ARG_LEO2_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.428 -0.307 -0.114 7 ARG_LEO2_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.634 0.431 0.270 8 ARG_LEO2_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.869 -0.075 -0.027 9 ARG_LEO2_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 -3.976 -1.240 -0.665 10 ARG_LEO2_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -4.965 0.596 0.322 11 ARG_LEO2_RNH1 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 4.314 0.012 -0.787 12 ARG_LEO2_RNH1 H H H 0 1 N N N 68.828 14.710 89.633 2.440 1.589 -1.352 13 ARG_LEO2_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 2.245 0.682 1.446 14 ARG_LEO2_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.090 -0.425 -1.151 15 ARG_LEO2_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.065 -1.278 0.410 16 ARG_LEO2_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.209 0.597 1.415 17 ARG_LEO2_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.184 1.451 -0.147 18 ARG_LEO2_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.408 -0.433 -1.196 19 ARG_LEO2_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.433 -1.286 0.365 20 ARG_LEO2_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.556 1.279 0.735 21 ARG_LEO2_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.852 -1.599 -0.875 22 ARG_LEO2_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -3.178 -1.728 -0.919 23 ARG_LEO2_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.887 1.444 0.787 24 ARG_LEO2_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.842 0.237 0.112 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LEO2_RNH1 N CA SING N N 1 ARG_LEO2_RNH1 N H SING N N 2 ARG_LEO2_RNH1 CA C SING N N 3 ARG_LEO2_RNH1 CA CB SING N N 4 ARG_LEO2_RNH1 CA HA SING N N 5 ARG_LEO2_RNH1 C O DOUB N N 6 ARG_LEO2_RNH1 C OXT SING N N 7 ARG_LEO2_RNH1 CB CG SING N N 8 ARG_LEO2_RNH1 CB HB2 SING N N 9 ARG_LEO2_RNH1 CB HB3 SING N N 10 ARG_LEO2_RNH1 CG CD SING N N 11 ARG_LEO2_RNH1 CG HG2 SING N N 12 ARG_LEO2_RNH1 CG HG3 SING N N 13 ARG_LEO2_RNH1 CD NE SING N N 14 ARG_LEO2_RNH1 CD HD2 SING N N 15 ARG_LEO2_RNH1 CD HD3 SING N N 16 ARG_LEO2_RNH1 NE CZ SING N N 17 ARG_LEO2_RNH1 NE HE SING N N 18 ARG_LEO2_RNH1 CZ NH1 DOUB N N 19 ARG_LEO2_RNH1 CZ NH2 SING N N 20 ARG_LEO2_RNH1 NH1 HH11 SING N N 21 ARG_LEO2_RNH1 NH1 HH12 SING N N 22 ARG_LEO2_RNH1 NH2 HH21 SING N N 23 ARG_LEO2_RNH1 NH2 HH22 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LEO2_RNH1 SMILES ACDLabs 10.04 [O-]C(=O)C([NH-])CCCNC(\N)=[NH2+] ARG_LEO2_RNH1 SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH-])C([O-])=O ARG_LEO2_RNH1 SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH-])C([O-])=O ARG_LEO2_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)[O-])[NH-])CNC(=[NH2+])N ARG_LEO2_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)[O-])[NH-])CNC(=[NH2+])N ARG_LEO2_RNH1 InChI InChI 1.02b InChI=1/C6H13N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4,7H,1-3H2,(H,11,12)(H4,8,9,10)/q-1/t4-/m0/s1/f/h10H,8-9H2 ARG_LEO2_RNH1 InChIKey InChI 1.02b YHGYUPIXTUWKFA-DQGZNMAIDC # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LEO2_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-azanidylpentanoate ARG_LEO2_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-[(amino-azaniumylidene-methyl)amino]-2-azanidyl-pentanoate # data_ARG_LFOH # _chem_comp.id ARG_LFOH _chem_comp.name "L-ARGININE FREE NEUTRAL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH N N N 0 1 N N N 69.812 14.685 89.810 2.325 1.789 -0.306 1 ARG_LFOH CA CA C 0 1 N N S 70.052 14.573 91.280 2.268 0.488 0.374 2 ARG_LFOH C C C 0 1 N N N 71.542 14.389 91.604 3.509 -0.303 0.047 3 ARG_LFOH O O O 0 1 N N N 72.354 14.342 90.659 4.167 -0.021 -0.926 4 ARG_LFOH CB CB C 0 1 N N N 69.227 13.419 91.854 1.033 -0.281 -0.098 5 ARG_LFOH CG CG C 0 1 N N N 67.722 13.607 91.686 -0.230 0.461 0.343 6 ARG_LFOH CD CD C 0 1 N N N 66.952 12.344 92.045 -1.465 -0.309 -0.130 7 ARG_LFOH NE NE N 0 1 N N N 67.307 11.224 91.178 -2.674 0.402 0.293 8 ARG_LFOH CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.907 -0.101 -0.019 9 ARG_LFOH NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.009 -1.238 -0.706 10 ARG_LFOH NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 -5.007 0.545 0.365 11 ARG_LFOH OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.882 -1.322 0.838 12 ARG_LFOH HA HA H 0 1 N N N 69.733 15.515 91.750 2.210 0.643 1.451 13 ARG_LFOH HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.048 -0.359 -1.186 14 ARG_LFOH HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.039 -1.280 0.338 15 ARG_LFOH HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.244 0.539 1.430 16 ARG_LFOH HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.235 1.460 -0.093 17 ARG_LFOH HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.450 -0.387 -1.217 18 ARG_LFOH HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.459 -1.308 0.306 19 ARG_LFOH HE HE H 0 1 N N N 67.872 11.418 90.376 -2.600 1.230 0.794 20 ARG_LFOH HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.208 -1.708 -0.986 21 ARG_LFOH HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.883 -1.594 -0.927 22 ARG_LFOH HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.933 1.372 0.866 23 ARG_LFOH HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.881 0.188 0.145 24 ARG_LFOH HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.685 -1.800 0.588 25 ARG_LFOH H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.380 1.672 -1.307 26 ARG_LFOH H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.535 2.364 -0.052 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH N CA SING N N 1 ARG_LFOH CA C SING N N 2 ARG_LFOH CA CB SING N N 3 ARG_LFOH CA HA SING N N 4 ARG_LFOH C O DOUB N N 5 ARG_LFOH C OXT SING N N 6 ARG_LFOH CB CG SING N N 7 ARG_LFOH CB HB2 SING N N 8 ARG_LFOH CB HB3 SING N N 9 ARG_LFOH CG CD SING N N 10 ARG_LFOH CG HG2 SING N N 11 ARG_LFOH CG HG3 SING N N 12 ARG_LFOH CD NE SING N N 13 ARG_LFOH CD HD2 SING N N 14 ARG_LFOH CD HD3 SING N N 15 ARG_LFOH NE CZ SING N N 16 ARG_LFOH NE HE SING N N 17 ARG_LFOH CZ NH1 SING N N 18 ARG_LFOH CZ NH2 DOUB N N 19 ARG_LFOH NH1 HH11 SING N N 20 ARG_LFOH NH1 HH12 SING N N 21 ARG_LFOH NH2 HH21 SING N N 22 ARG_LFOH NH2 HH22 SING N N 23 ARG_LFOH OXT HXT SING N N 24 ARG_LFOH H1 N SING N N 25 ARG_LFOH H2 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH SMILES ACDLabs 10.04 O=C(O)C(N)CCCN\C(=[NH2+])N ARG_LFOH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH SMILES CACTVS 3.341 N[CH](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)N)CNC(=[NH2+])N ARG_LFOH SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)N)CNC(=[NH2+])N ARG_LFOH InChI InChI 1.02b InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1/fC6H15N4O2/h10-11H,8-9H2/q+1 ARG_LFOH InChIKey InChI 1.02b ODKSFYDXXFIFQN-XBWPUUDFDV # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH "SYSTEMATIC NAME" ACDLabs 10.04 amino{[(4S)-4-amino-4-carboxybutyl]amino}methaniminium ARG_LFOH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [amino-[[(4S)-4-amino-5-hydroxy-5-oxo-pentyl]amino]methylidene]azanium # data_ARG_LFOH_DHH12 # _chem_comp.id ARG_LFOH_DHH12 _chem_comp.name "L-ARGININE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH_DHH12 N N N 0 1 N N N 69.812 14.685 89.810 2.303 1.794 -0.264 1 ARG_LFOH_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.251 0.477 0.384 2 ARG_LFOH_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.496 -0.300 0.042 3 ARG_LFOH_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.155 0.009 -0.922 4 ARG_LFOH_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.021 -0.287 -0.110 5 ARG_LFOH_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.247 0.438 0.345 6 ARG_LFOH_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.477 -0.326 -0.149 7 ARG_LFOH_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.691 0.368 0.287 8 ARG_LFOH_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.927 -0.136 -0.042 9 ARG_LFOH_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.018 -1.231 -0.742 10 ARG_LFOH_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.066 0.516 0.367 11 ARG_LFOH_DHH12 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.873 -1.336 0.809 12 ARG_LFOH_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.188 0.606 1.465 13 ARG_LFOH_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.039 -0.338 -1.199 14 ARG_LFOH_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.030 -1.296 0.301 15 ARG_LFOH_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.265 0.490 1.434 16 ARG_LFOH_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.256 1.447 -0.067 17 ARG_LFOH_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.459 -0.377 -1.238 18 ARG_LFOH_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.467 -1.335 0.262 19 ARG_LFOH_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.623 1.184 0.808 20 ARG_LFOH_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.891 -1.587 -0.974 21 ARG_LFOH_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.998 1.331 0.888 22 ARG_LFOH_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.938 0.160 0.135 23 ARG_LFOH_DHH12 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.678 -1.804 0.549 24 ARG_LFOH_DHH12 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.361 1.702 -1.267 25 ARG_LFOH_DHH12 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.510 2.359 0.002 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH_DHH12 N CA SING N N 1 ARG_LFOH_DHH12 CA C SING N N 2 ARG_LFOH_DHH12 CA CB SING N N 3 ARG_LFOH_DHH12 CA HA SING N N 4 ARG_LFOH_DHH12 C O DOUB N N 5 ARG_LFOH_DHH12 C OXT SING N N 6 ARG_LFOH_DHH12 CB CG SING N N 7 ARG_LFOH_DHH12 CB HB2 SING N N 8 ARG_LFOH_DHH12 CB HB3 SING N N 9 ARG_LFOH_DHH12 CG CD SING N N 10 ARG_LFOH_DHH12 CG HG2 SING N N 11 ARG_LFOH_DHH12 CG HG3 SING N N 12 ARG_LFOH_DHH12 CD NE SING N N 13 ARG_LFOH_DHH12 CD HD2 SING N N 14 ARG_LFOH_DHH12 CD HD3 SING N N 15 ARG_LFOH_DHH12 NE CZ SING N N 16 ARG_LFOH_DHH12 NE HE SING N N 17 ARG_LFOH_DHH12 CZ NH1 DOUB N N 18 ARG_LFOH_DHH12 CZ NH2 SING N N 19 ARG_LFOH_DHH12 NH1 HH11 SING N N 20 ARG_LFOH_DHH12 NH2 HH21 SING N N 21 ARG_LFOH_DHH12 NH2 HH22 SING N N 22 ARG_LFOH_DHH12 OXT HXT SING N N 23 ARG_LFOH_DHH12 H1 N SING N N 24 ARG_LFOH_DHH12 H2 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH_DHH12 SMILES ACDLabs 10.04 O=C(O)C(N)CCCNC(=[N@H])N ARG_LFOH_DHH12 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH12 SMILES CACTVS 3.341 N[CH](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)O)N ARG_LFOH_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)N ARG_LFOH_DHH12 InChI InChI 1.02b InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1/f/h8,10-11H,9H2/b8-6+ ARG_LFOH_DHH12 InChIKey InChI 1.02b ODKSFYDXXFIFQN-GKBZDYMBDC # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 L-arginine ARG_LFOH_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-carbamimidamido-pentanoic acid" # data_ARG_LFOH_DHH22 # _chem_comp.id ARG_LFOH_DHH22 _chem_comp.name "L-ARGININE-FREE NEUTRAL/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH_DHH22 N N N 0 1 N N N 69.812 14.685 89.810 2.296 1.785 -0.322 1 ARG_LFOH_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.237 0.491 0.369 2 ARG_LFOH_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.474 -0.308 0.047 3 ARG_LFOH_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.131 -0.036 -0.929 4 ARG_LFOH_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 0.998 -0.279 -0.094 5 ARG_LFOH_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.262 0.471 0.343 6 ARG_LFOH_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.500 -0.299 -0.120 7 ARG_LFOH_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.707 0.420 0.298 8 ARG_LFOH_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.948 -0.085 -0.008 9 ARG_LFOH_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.058 -1.264 -0.707 10 ARG_LFOH_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.021 0.554 0.365 11 ARG_LFOH_DHH22 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.845 -1.321 0.846 12 ARG_LFOH_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.180 0.655 1.445 13 ARG_LFOH_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.010 -0.367 -1.181 14 ARG_LFOH_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.001 -1.274 0.351 15 ARG_LFOH_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.274 0.559 1.429 16 ARG_LFOH_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.265 1.466 -0.102 17 ARG_LFOH_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.488 -0.386 -1.207 18 ARG_LFOH_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.497 -1.294 0.325 19 ARG_LFOH_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.629 1.251 0.792 20 ARG_LFOH_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.259 -1.739 -0.984 21 ARG_LFOH_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.934 -1.620 -0.923 22 ARG_LFOH_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.944 1.386 0.858 23 ARG_LFOH_DHH22 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.646 -1.804 0.599 24 ARG_LFOH_DHH22 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.348 1.659 -1.322 25 ARG_LFOH_DHH22 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.509 2.365 -0.072 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH_DHH22 N CA SING N N 1 ARG_LFOH_DHH22 CA C SING N N 2 ARG_LFOH_DHH22 CA CB SING N N 3 ARG_LFOH_DHH22 CA HA SING N N 4 ARG_LFOH_DHH22 C O DOUB N N 5 ARG_LFOH_DHH22 C OXT SING N N 6 ARG_LFOH_DHH22 CB CG SING N N 7 ARG_LFOH_DHH22 CB HB2 SING N N 8 ARG_LFOH_DHH22 CB HB3 SING N N 9 ARG_LFOH_DHH22 CG CD SING N N 10 ARG_LFOH_DHH22 CG HG2 SING N N 11 ARG_LFOH_DHH22 CG HG3 SING N N 12 ARG_LFOH_DHH22 CD NE SING N N 13 ARG_LFOH_DHH22 CD HD2 SING N N 14 ARG_LFOH_DHH22 CD HD3 SING N N 15 ARG_LFOH_DHH22 NE CZ SING N N 16 ARG_LFOH_DHH22 NE HE SING N N 17 ARG_LFOH_DHH22 CZ NH1 SING N N 18 ARG_LFOH_DHH22 CZ NH2 DOUB N N 19 ARG_LFOH_DHH22 NH1 HH11 SING N N 20 ARG_LFOH_DHH22 NH1 HH12 SING N N 21 ARG_LFOH_DHH22 NH2 HH21 SING N N 22 ARG_LFOH_DHH22 OXT HXT SING N N 23 ARG_LFOH_DHH22 H1 N SING N N 24 ARG_LFOH_DHH22 H2 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH_DHH22 SMILES ACDLabs 10.04 O=C(O)C(N)CCCNC(=[N@H])N ARG_LFOH_DHH22 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH22 SMILES CACTVS 3.341 N[CH](CCCNC(N)=N)C(O)=O ARG_LFOH_DHH22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(/N)\NCCC[C@@H](C(=O)O)N ARG_LFOH_DHH22 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)O)N ARG_LFOH_DHH22 InChI InChI 1.02b InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1/f/h8,10-11H,9H2/b8-6- ARG_LFOH_DHH22 InChIKey InChI 1.02b ODKSFYDXXFIFQN-BRXOTDAPDA # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH_DHH22 "SYSTEMATIC NAME" ACDLabs 10.04 L-arginine ARG_LFOH_DHH22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-carbamimidamido-pentanoic acid" # data_ARG_LFOH_RNH1 # _chem_comp.id ARG_LFOH_RNH1 _chem_comp.name "L-ARGININE-FREE NEUTRAL/SIDE CHAIN RESONANCE ALTERNATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFOH_RNH1 N N N 0 1 N N N 69.812 14.685 89.810 2.325 1.789 -0.306 1 ARG_LFOH_RNH1 CA CA C 0 1 N N S 70.052 14.573 91.280 2.268 0.488 0.374 2 ARG_LFOH_RNH1 C C C 0 1 N N N 71.542 14.389 91.604 3.509 -0.303 0.047 3 ARG_LFOH_RNH1 O O O 0 1 N N N 72.354 14.342 90.659 4.167 -0.021 -0.926 4 ARG_LFOH_RNH1 CB CB C 0 1 N N N 69.227 13.419 91.854 1.033 -0.281 -0.098 5 ARG_LFOH_RNH1 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.230 0.461 0.343 6 ARG_LFOH_RNH1 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.465 -0.309 -0.130 7 ARG_LFOH_RNH1 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.674 0.402 0.293 8 ARG_LFOH_RNH1 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.907 -0.101 -0.019 9 ARG_LFOH_RNH1 NH1 NH1 N 1 1 N N N 66.176 9.651 92.421 -4.009 -1.238 -0.706 10 ARG_LFOH_RNH1 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.007 0.545 0.365 11 ARG_LFOH_RNH1 OXT OXT O 0 1 N Y N 71.901 14.320 92.798 3.882 -1.322 0.838 12 ARG_LFOH_RNH1 HA HA H 0 1 N N N 69.733 15.515 91.750 2.210 0.643 1.451 13 ARG_LFOH_RNH1 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.048 -0.359 -1.186 14 ARG_LFOH_RNH1 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.039 -1.280 0.338 15 ARG_LFOH_RNH1 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.244 0.539 1.430 16 ARG_LFOH_RNH1 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.235 1.460 -0.093 17 ARG_LFOH_RNH1 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.450 -0.387 -1.217 18 ARG_LFOH_RNH1 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.459 -1.308 0.306 19 ARG_LFOH_RNH1 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.600 1.230 0.794 20 ARG_LFOH_RNH1 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.883 -1.594 -0.927 21 ARG_LFOH_RNH1 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -3.208 -1.708 -0.986 22 ARG_LFOH_RNH1 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.933 1.372 0.866 23 ARG_LFOH_RNH1 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.881 0.188 0.145 24 ARG_LFOH_RNH1 HXT HXT H 0 1 N Y N 72.846 14.231 92.840 4.685 -1.800 0.588 25 ARG_LFOH_RNH1 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.380 1.672 -1.307 26 ARG_LFOH_RNH1 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.535 2.364 -0.052 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFOH_RNH1 N CA SING N N 1 ARG_LFOH_RNH1 CA C SING N N 2 ARG_LFOH_RNH1 CA CB SING N N 3 ARG_LFOH_RNH1 CA HA SING N N 4 ARG_LFOH_RNH1 C O DOUB N N 5 ARG_LFOH_RNH1 C OXT SING N N 6 ARG_LFOH_RNH1 CB CG SING N N 7 ARG_LFOH_RNH1 CB HB2 SING N N 8 ARG_LFOH_RNH1 CB HB3 SING N N 9 ARG_LFOH_RNH1 CG CD SING N N 10 ARG_LFOH_RNH1 CG HG2 SING N N 11 ARG_LFOH_RNH1 CG HG3 SING N N 12 ARG_LFOH_RNH1 CD NE SING N N 13 ARG_LFOH_RNH1 CD HD2 SING N N 14 ARG_LFOH_RNH1 CD HD3 SING N N 15 ARG_LFOH_RNH1 NE CZ SING N N 16 ARG_LFOH_RNH1 NE HE SING N N 17 ARG_LFOH_RNH1 CZ NH1 DOUB N N 18 ARG_LFOH_RNH1 CZ NH2 SING N N 19 ARG_LFOH_RNH1 NH1 HH11 SING N N 20 ARG_LFOH_RNH1 NH1 HH12 SING N N 21 ARG_LFOH_RNH1 NH2 HH21 SING N N 22 ARG_LFOH_RNH1 NH2 HH22 SING N N 23 ARG_LFOH_RNH1 OXT HXT SING N N 24 ARG_LFOH_RNH1 H1 N SING N N 25 ARG_LFOH_RNH1 H2 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFOH_RNH1 SMILES ACDLabs 10.04 O=C(O)C(N)CCCN\C(=[NH2+])N ARG_LFOH_RNH1 SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH_RNH1 SMILES CACTVS 3.341 N[CH](CCCNC(N)=[NH2+])C(O)=O ARG_LFOH_RNH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)O)N)CNC(=[NH2+])N ARG_LFOH_RNH1 SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)O)N)CNC(=[NH2+])N ARG_LFOH_RNH1 InChI InChI 1.02b InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1/fC6H15N4O2/h10-11H,8-9H2/q+1 ARG_LFOH_RNH1 InChIKey InChI 1.02b ODKSFYDXXFIFQN-XBWPUUDFDV # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFOH_RNH1 "SYSTEMATIC NAME" ACDLabs 10.04 amino{[(4S)-4-amino-4-carboxybutyl]amino}methaniminium ARG_LFOH_RNH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 [amino-[[(4S)-4-amino-5-hydroxy-5-oxo-pentyl]amino]methylidene]azanium # data_ARG_LFZW # _chem_comp.id ARG_LFZW _chem_comp.name "L-ARGININE FREE ZWITTERION" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-12-20 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFZW N N N 1 1 N N N 69.812 14.685 89.810 -2.364 1.710 0.348 1 ARG_LFZW CA CA C 0 1 N N S 70.052 14.573 91.280 -2.284 0.438 -0.381 2 ARG_LFZW C C C 0 1 N N N 71.542 14.389 91.604 -3.515 -0.384 -0.093 3 ARG_LFZW O O O 0 1 N N N 72.354 14.342 90.659 -3.737 -1.395 -0.737 4 ARG_LFZW CB CB C 0 1 N N N 69.227 13.419 91.854 -1.041 -0.332 0.069 5 ARG_LFZW CG CG C 0 1 N N N 67.722 13.607 91.686 0.214 0.445 -0.336 6 ARG_LFZW CD CD C 0 1 N N N 66.952 12.344 92.045 1.457 -0.324 0.115 7 ARG_LFZW NE NE N 0 1 N N N 67.307 11.224 91.178 2.658 0.420 -0.273 8 ARG_LFZW CZ CZ C 0 1 N N N 66.932 9.966 91.380 3.897 -0.077 0.027 9 ARG_LFZW NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 4.011 -1.237 0.671 10 ARG_LFZW NH2 NH2 N 1 1 N N N 67.344 9.015 90.554 4.989 0.600 -0.326 11 ARG_LFZW OXT OXT O -1 1 N Y N 71.901 14.320 92.798 -4.287 -0.038 0.785 12 ARG_LFZW HA HA H 0 1 N N N 69.733 15.515 91.750 -2.222 0.635 -1.451 13 ARG_LFZW HB2 1HB H 0 1 N N N 69.518 12.496 91.331 -1.060 -0.452 1.152 14 ARG_LFZW HB3 2HB H 0 1 N N N 69.432 13.376 92.934 -1.029 -1.313 -0.405 15 ARG_LFZW HG2 1HG H 0 1 N N N 67.392 14.422 92.348 0.233 0.565 -1.419 16 ARG_LFZW HG3 2HG H 0 1 N N N 67.521 13.844 90.631 0.202 1.427 0.139 17 ARG_LFZW HD2 1HD H 0 1 N N N 67.187 12.072 93.085 1.438 -0.444 1.198 18 ARG_LFZW HD3 2HD H 0 1 N N N 65.879 12.549 91.916 1.469 -1.305 -0.360 19 ARG_LFZW HE HE H 0 1 N N N 67.872 11.418 90.376 2.575 1.265 -0.742 20 ARG_LFZW HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 3.216 -1.730 0.927 21 ARG_LFZW HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 4.890 -1.589 0.883 22 ARG_LFZW HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 5.867 0.247 -0.113 23 ARG_LFZW HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 4.906 1.445 -0.795 24 ARG_LFZW H1 H1 H 0 1 N N N 68.828 14.710 89.633 -1.540 2.260 0.155 25 ARG_LFZW H2 H2 H 0 1 N N N 70.234 15.524 89.467 -3.184 2.217 0.051 26 ARG_LFZW H3 H3 H 0 1 N N N 70.214 13.896 89.346 -2.422 1.527 1.339 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFZW N CA SING N N 1 ARG_LFZW CA C SING N N 2 ARG_LFZW CA CB SING N N 3 ARG_LFZW CA HA SING N N 4 ARG_LFZW C O DOUB N N 5 ARG_LFZW C OXT SING N N 6 ARG_LFZW CB CG SING N N 7 ARG_LFZW CB HB2 SING N N 8 ARG_LFZW CB HB3 SING N N 9 ARG_LFZW CG CD SING N N 10 ARG_LFZW CG HG2 SING N N 11 ARG_LFZW CG HG3 SING N N 12 ARG_LFZW CD NE SING N N 13 ARG_LFZW CD HD2 SING N N 14 ARG_LFZW CD HD3 SING N N 15 ARG_LFZW NE CZ SING N N 16 ARG_LFZW NE HE SING N N 17 ARG_LFZW CZ NH1 SING N N 18 ARG_LFZW CZ NH2 DOUB N N 19 ARG_LFZW NH1 HH11 SING N N 20 ARG_LFZW NH1 HH12 SING N N 21 ARG_LFZW NH2 HH21 SING N N 22 ARG_LFZW NH2 HH22 SING N N 23 ARG_LFZW H1 N SING N N 24 ARG_LFZW H2 N SING N N 25 ARG_LFZW H3 N SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFZW SMILES ACDLabs 10.04 [O-]C(=O)C(CCCNC(\N)=[NH2+])[NH3+] ARG_LFZW SMILES_CANONICAL CACTVS 3.341 NC(=[NH2+])NCCC[C@H]([NH3+])C([O-])=O ARG_LFZW SMILES CACTVS 3.341 NC(=[NH2+])NCCC[CH]([NH3+])C([O-])=O ARG_LFZW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(C[C@@H](C(=O)[O-])[NH3+])CNC(=[NH2+])N ARG_LFZW SMILES "OpenEye OEToolkits" 1.5.0 C(CC(C(=O)[O-])[NH3+])CNC(=[NH2+])N ARG_LFZW InChI InChI 1.02b InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1/fC6H15N4O2/h7,10H,8-9H2/q+1 ARG_LFZW InChIKey InChI 1.02b ODKSFYDXXFIFQN-NFLMJRDDDZ # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFZW "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-5-{[amino(iminio)methyl]amino}-2-ammoniopentanoate ARG_LFZW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-5-[(amino-azaniumylidene-methyl)amino]-2-azaniumyl-pentanoate # data_ARG_LFZW_DHH12 # _chem_comp.id ARG_LFZW_DHH12 _chem_comp.name "L-ARGININE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED NH1" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFZW_DHH12 N N N 1 1 N N N 69.812 14.685 89.810 2.345 1.707 -0.335 1 ARG_LFZW_DHH12 CA CA C 0 1 N N S 70.052 14.573 91.280 2.268 0.429 0.384 2 ARG_LFZW_DHH12 C C C 0 1 N N N 71.542 14.389 91.604 3.502 -0.386 0.093 3 ARG_LFZW_DHH12 O O O 0 1 N N N 72.354 14.342 90.659 4.365 0.057 -0.645 4 ARG_LFZW_DHH12 CB CB C 0 1 N N N 69.227 13.419 91.854 1.028 -0.341 -0.076 5 ARG_LFZW_DHH12 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.230 0.428 0.331 6 ARG_LFZW_DHH12 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.470 -0.341 -0.129 7 ARG_LFZW_DHH12 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.675 0.396 0.261 8 ARG_LFZW_DHH12 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.917 -0.106 -0.048 9 ARG_LFZW_DHH12 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.023 -1.237 -0.687 10 ARG_LFZW_DHH12 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.048 0.586 0.318 11 ARG_LFZW_DHH12 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 3.636 -1.489 0.596 12 ARG_LFZW_DHH12 HA HA H 0 1 N N N 69.733 15.515 91.750 2.201 0.618 1.456 13 ARG_LFZW_DHH12 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.051 -0.453 -1.160 14 ARG_LFZW_DHH12 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 1.018 -1.326 0.391 15 ARG_LFZW_DHH12 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.253 0.540 1.415 16 ARG_LFZW_DHH12 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.220 1.414 -0.135 17 ARG_LFZW_DHH12 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.447 -0.453 -1.213 18 ARG_LFZW_DHH12 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.480 -1.326 0.338 19 ARG_LFZW_DHH12 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.596 1.237 0.737 20 ARG_LFZW_DHH12 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -4.899 -1.590 -0.905 21 ARG_LFZW_DHH12 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.969 1.427 0.793 22 ARG_LFZW_DHH12 HH22 2HH2 H 0 0 N N N 67.116 8.046 90.645 -5.924 0.232 0.100 23 ARG_LFZW_DHH12 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.406 1.533 -1.327 24 ARG_LFZW_DHH12 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.519 2.253 -0.140 25 ARG_LFZW_DHH12 H3 H3 H 0 1 N N N 70.214 13.896 89.346 3.162 2.215 -0.032 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFZW_DHH12 N CA SING N N 1 ARG_LFZW_DHH12 CA C SING N N 2 ARG_LFZW_DHH12 CA CB SING N N 3 ARG_LFZW_DHH12 CA HA SING N N 4 ARG_LFZW_DHH12 C O DOUB N N 5 ARG_LFZW_DHH12 C OXT SING N N 6 ARG_LFZW_DHH12 CB CG SING N N 7 ARG_LFZW_DHH12 CB HB2 SING N N 8 ARG_LFZW_DHH12 CB HB3 SING N N 9 ARG_LFZW_DHH12 CG CD SING N N 10 ARG_LFZW_DHH12 CG HG2 SING N N 11 ARG_LFZW_DHH12 CG HG3 SING N N 12 ARG_LFZW_DHH12 CD NE SING N N 13 ARG_LFZW_DHH12 CD HD2 SING N N 14 ARG_LFZW_DHH12 CD HD3 SING N N 15 ARG_LFZW_DHH12 NE CZ SING N N 16 ARG_LFZW_DHH12 NE HE SING N N 17 ARG_LFZW_DHH12 CZ NH1 DOUB N N 18 ARG_LFZW_DHH12 CZ NH2 SING N N 19 ARG_LFZW_DHH12 NH1 HH11 SING N N 20 ARG_LFZW_DHH12 NH2 HH21 SING N N 21 ARG_LFZW_DHH12 NH2 HH22 SING N N 22 ARG_LFZW_DHH12 H1 N SING N N 23 ARG_LFZW_DHH12 H2 N SING N N 24 ARG_LFZW_DHH12 H3 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ARG_LFZW_DHH12 SMILES ACDLabs 10.04 [O-]C(=O)C(CCCNC(=[N@H])N)[NH3+] ARG_LFZW_DHH12 SMILES_CANONICAL CACTVS 3.341 NC(=N)NCCC[C@H]([NH3+])C([O-])=O ARG_LFZW_DHH12 SMILES CACTVS 3.341 NC(=N)NCCC[CH]([NH3+])C([O-])=O ARG_LFZW_DHH12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 [H]/N=C(\N)/NCCC[C@@H](C(=O)[O-])[NH3+] ARG_LFZW_DHH12 SMILES "OpenEye OEToolkits" 1.5.0 [H]N=C(N)NCCCC(C(=O)[O-])[NH3+] ARG_LFZW_DHH12 InChI InChI 1.02b InChI=1/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1/f/h7-8,10H,9H2/b8-6+ ARG_LFZW_DHH12 InChIKey InChI 1.02b ODKSFYDXXFIFQN-ZPKOSPMSDB # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ARG_LFZW_DHH12 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-ammonio-5-carbamimidamidopentanoate ARG_LFZW_DHH12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-azaniumyl-5-carbamimidamido-pentanoate # data_ARG_LFZW_DHH22 # _chem_comp.id ARG_LFZW_DHH22 _chem_comp.name "L-ARGININE-FREE ZWITTERION/WITH SIDE CHAIN DEPROTONATED NH2" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-22 _chem_comp.pdbx_modified_date 2008-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.201 _chem_comp.one_letter_code R _chem_comp.three_letter_code ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_ordinal ARG_LFZW_DHH22 N N N 1 1 N N N 69.812 14.685 89.810 2.338 1.698 -0.377 1 ARG_LFZW_DHH22 CA CA C 0 1 N N S 70.052 14.573 91.280 2.253 0.439 0.374 2 ARG_LFZW_DHH22 C C C 0 1 N N N 71.542 14.389 91.604 3.479 -0.394 0.099 3 ARG_LFZW_DHH22 O O O 0 1 N N N 72.354 14.342 90.659 4.343 0.023 -0.654 4 ARG_LFZW_DHH22 CB CB C 0 1 N N N 69.227 13.419 91.854 1.005 -0.331 -0.061 5 ARG_LFZW_DHH22 CG CG C 0 1 N N N 67.722 13.607 91.686 -0.245 0.459 0.332 6 ARG_LFZW_DHH22 CD CD C 0 1 N N N 66.952 12.344 92.045 -1.493 -0.311 -0.104 7 ARG_LFZW_DHH22 NE NE N 0 1 N N N 67.307 11.224 91.178 -2.690 0.446 0.273 8 ARG_LFZW_DHH22 CZ CZ C 0 1 N N N 66.932 9.966 91.380 -3.938 -0.052 -0.018 9 ARG_LFZW_DHH22 NH1 NH1 N 0 1 N N N 66.176 9.651 92.421 -4.063 -1.260 -0.662 10 ARG_LFZW_DHH22 NH2 NH2 N 0 1 N N N 67.344 9.015 90.554 -5.002 0.622 0.316 11 ARG_LFZW_DHH22 OXT OXT O -1 1 N Y N 71.901 14.320 92.798 3.606 -1.485 0.628 12 ARG_LFZW_DHH22 HA HA H 0 1 N N N 69.733 15.515 91.750 2.193 0.655 1.441 13 ARG_LFZW_DHH22 HB2 1HB H 0 1 N N N 69.518 12.496 91.331 1.022 -0.470 -1.142 14 ARG_LFZW_DHH22 HB3 2HB H 0 1 N N N 69.432 13.376 92.934 0.988 -1.304 0.430 15 ARG_LFZW_DHH22 HG2 1HG H 0 1 N N N 67.392 14.422 92.348 -0.262 0.598 1.413 16 ARG_LFZW_DHH22 HG3 2HG H 0 1 N N N 67.521 13.844 90.631 -0.228 1.432 -0.159 17 ARG_LFZW_DHH22 HD2 1HD H 0 1 N N N 67.187 12.072 93.085 -1.476 -0.450 -1.184 18 ARG_LFZW_DHH22 HD3 2HD H 0 1 N N N 65.879 12.549 91.916 -1.510 -1.284 0.387 19 ARG_LFZW_DHH22 HE HE H 0 1 N N N 67.872 11.418 90.376 -2.601 1.299 0.727 20 ARG_LFZW_DHH22 HH11 1HH1 H 0 0 N N N 65.980 8.670 92.434 -3.271 -1.761 -0.911 21 ARG_LFZW_DHH22 HH12 2HH1 H 0 0 N N N 65.846 10.305 93.101 -4.944 -1.611 -0.867 22 ARG_LFZW_DHH22 HH21 1HH2 H 0 0 N N N 67.914 9.398 89.827 -4.914 1.474 0.771 23 ARG_LFZW_DHH22 H1 H1 H 0 1 N N N 68.828 14.710 89.633 2.394 1.498 -1.364 24 ARG_LFZW_DHH22 H2 H2 H 0 1 N N N 70.234 15.524 89.467 1.518 2.256 -0.192 25 ARG_LFZW_DHH22 H3 H3 H 0 1 N N N 70.214 13.896 89.346 3.161 2.206 -0.090 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG_LFZW_DHH22 N CA SING N N 1 ARG_LFZW_DHH22 CA C SING N N 2 ARG_LFZW_DHH22 CA CB SING N N 3 ARG_LFZW_DHH22 CA HA SING N N 4 ARG_LFZW_DHH22 C O DOUB N N 5 ARG_LFZW_DHH22 C OXT SING N N 6 ARG_LFZW_DHH22 CB CG SING N N 7 ARG_LFZW_DHH22 CB HB2 SING N N 8 ARG_LFZW_DHH22 CB HB3 SING N N 9 ARG_LFZW_DHH22 CG CD SING N N 10 ARG_LFZW_DHH22 CG HG2 SING N N 11 ARG_LFZW_DHH22 CG HG3 SING N N 12 ARG_LFZW_DHH22 CD NE SING N N 13 ARG_LFZW_DHH22 CD HD2 SING N N 14 ARG_LFZW_DHH22 CD HD3 SING N N 15 ARG_LFZW_DHH22 NE CZ SING N N 16 ARG_LFZW_DHH22 NE HE SING N N 17 ARG_LFZW_DHH22 CZ NH1 SING N N 18 ARG_LFZW_DHH22 CZ NH2 DOUB N N 19 ARG_LFZW_DHH22 NH1 HH11 SING N N 20 ARG_LFZW_DHH22 NH1 HH12 SING N N 21 ARG_LFZW_DHH22 NH2 HH21 SING N N 22 ARG_LFZW_DHH22 H1 N SING N N 23 ARG_LFZW_DHH22 H2 N SING N N 24 ARG_LFZW_DHH22 H3 N SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type